Rh1CG396600

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000238
Physical Location & Seq
Forward (+)
66358045 .. 66366859
8815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG396600.1

Sequence Viewer

Length: 942 bp
ATGTGGTTCTTTAGAAGAAAAGGCCCATCTGGGTTCTCATCATCTTCCACAGCGGAAGAAGTTACTCAAGGGATTGATGCCACTGGTCTCACTGCCATTGTTACAGGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTGCGTGGTGCCCATGTGATCATGGGAGTGAGGAATATGGCTGCGGGTAAAGATGTGAAAGATGCGATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATGGAGTTGGATCTCAGTTCATTGTCATCTGTGAGGAAATTTGCATCAGATTACAAATCTGCTGGTCGTCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCGACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCATATAGGTCATTTTCTATTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACGTTCAAGTAGCAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCGGTTTGCATATCGTGAAGGAATCCGTTTTGATAGAATCAACGACCCATCAGGGTACAGCAGTTGGCCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAACTTTCAAAACAAATAAAGGAAGATGGGGCAAATATAACTGCAAATGCACTTCACCCTGGTGCAATTCTCACCAATCTTTTCCGTCATAACATTGTTATCAATGGGCTTGTTAATGTGCTCGGTAGAGTTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACAACTTGCTATGTGGCATTGCATCCACAAGCTGAAGGGGTGAGCGGTGAATATTTTTCAGACAGTAATATTTCCAAGCCAACATCCCAAGCTGAAGACGAGTTGTTGGCAAAGAAACTCTGGGATTTCAGCAAGGATTTGACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

313

Amino Acids

33.92

Weight (kDa)

9.16

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 176 1.1e-25 short chain dehydrogenase
KR PF08659 31 - 131 8.4e-08 KR domain
adh_short_C2 PF13561 36 - 241 1.4e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 837
AccII CGCG 1 cut(s) 139
AciI CCGC 3 cut(s) 53, 194, 837
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 4 cut(s) 380, 531, 846, 906
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 137
AgeI ACCGGT 1 cut(s) 519
AgsI TTSAA 3 cut(s) 392, 474, 639
AjnI CCWGG 1 cut(s) 688
AleI CACNNNNGTG 1 cut(s) 690
AluBI AGCT 5 cut(s) 515, 607, 611, 824, 884
AluI AGCT 5 cut(s) 515, 607, 611, 824, 884
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 270
AoxI GGCC 2 cut(s) 22, 584
ApeKI GCWGC 2 cut(s) 191, 788
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
AsiGI ACCGGT 1 cut(s) 519
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 5 cut(s) 509, 677, 694, 844, 851
AsuNHI GCTAGC 1 cut(s) 607
BaeGI GKGCMC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BanI GGYRCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 2 cut(s) 178, 800
BccI CCATC 3 cut(s) 34, 574, 650
BciT130I CCWGG 1 cut(s) 690
BciVI GTATCC 2 cut(s) 442, 514
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 114, 608
BfuI GTATCC 2 cut(s) 442, 514
BisI GCNGC 2 cut(s) 192, 789
BlsI GCNGC 2 cut(s) 193, 790
Bme1390I CCNGG 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 690
BmsI GCATC 6 cut(s) 67, 119, 202, 238, 305, 823
BmtI GCTAGC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 894
BpuEI CTTGAG 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 252, 688
BsaWI WCCGGW 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 809
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 2 cut(s) 252, 688
BseGI GGATG 2 cut(s) 814, 875
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 809
BseMII CTCAG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 2 cut(s) 178, 800
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 24, 586
BshNI GGYRCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 753
BsiSI CCGG 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 593
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 2 cut(s) 24, 586
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 163, 753
Bsp143I GATC 2 cut(s) 168, 262
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 3 cut(s) 53, 194, 837
BspANI GGCC 2 cut(s) 24, 586
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 611
BspPI GGATC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 837
BsrDI GCAATG 1 cut(s) 809
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 2 cut(s) 252, 688
BssMI GATC 2 cut(s) 168, 262
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 1 cut(s) 857
BstC8I GCNNGC 3 cut(s) 588, 609, 624
BstDEI CTNAG 1 cut(s) 266
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 814, 875
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 2 cut(s) 171, 265
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 168, 262
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 1 cut(s) 688
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 178, 800
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 2 cut(s) 442, 514
BsuRI GGCC 2 cut(s) 24, 586
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 814, 875
BtsI GCAGTG 3 cut(s) 90, 149, 234
BtsIMutI CAGTG 5 cut(s) 81, 90, 126, 149, 234
Cac8I GCNNGC 3 cut(s) 588, 609, 624
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 574
CspAI ACCGGT 1 cut(s) 519
CviAII CATG 4 cut(s) 164, 172, 253, 623
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 170, 264
DpnII GATC 2 cut(s) 168, 262
DraIII CACNNNGTG 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 92
Eco57I CTGAAG 4 cut(s) 380, 531, 846, 906
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 4 cut(s) 167, 175, 256, 626
FatI CATG 4 cut(s) 163, 171, 252, 622
FauI CCCGC 1 cut(s) 187
FauNDI CATATG 1 cut(s) 592
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 192, 789
FokI GGATG 2 cut(s) 801, 862
Fsp4HI GCNGC 2 cut(s) 192, 789
FspBI CTAG 2 cut(s) 114, 608
GluI GCNGC 2 cut(s) 192, 789
HaeIII GGCC 2 cut(s) 24, 586
HapII CCGG 1 cut(s) 520
Hin1II CATG 4 cut(s) 167, 175, 256, 626
HinfI GANTC 2 cut(s) 540, 555
HpaII CCGG 1 cut(s) 520
HphI GGTGA 5 cut(s) 509, 677, 694, 844, 851
Hpy188I TCNGA 3 cut(s) 301, 511, 853
Hpy188III TCNNGA 1 cut(s) 533
HpyAV CCTTC 3 cut(s) 479, 530, 821
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 1 cut(s) 469
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 4 cut(s) 167, 175, 256, 626
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 2 cut(s) 168, 262
LmnI GCTCC 2 cut(s) 107, 785
Lsp1109I GCAGC 2 cut(s) 178, 800
LweI GCATC 6 cut(s) 67, 119, 202, 238, 305, 823
MaeI CTAG 2 cut(s) 114, 608
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 2 cut(s) 61, 100
MalI GATC 2 cut(s) 170, 264
MbiI CCGCTC 1 cut(s) 837
MboI GATC 2 cut(s) 168, 262
MboII GAAGA 5 cut(s) 27, 36, 68, 665, 899
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 163, 753
MluCI AATT 6 cut(s) 243, 290, 336, 351, 492, 696
MluI ACGCGT 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 240, 426
MnlI CCTC 4 cut(s) 174, 279, 333, 517
MseI TTAA 5 cut(s) 222, 335, 339, 744, 768
MslI CAYNNNNRTG 2 cut(s) 176, 690
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 520
MspR9I CCNGG 1 cut(s) 690
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 139
NcoI CCATGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 592
NdeII GATC 2 cut(s) 168, 262
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 4 cut(s) 167, 175, 256, 626
NlaIV GGNNCC 1 cut(s) 160
NspI RCATGY 1 cut(s) 626
OliI CACNNNNGTG 1 cut(s) 690
PacI TTAATTAA 1 cut(s) 339
PaeI GCATGC 1 cut(s) 626
PfeI GAWTC 2 cut(s) 540, 555
PinAI ACCGGT 1 cut(s) 519
PkrI GCNGC 2 cut(s) 193, 790
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 176, 690
SaqAI TTAA 5 cut(s) 222, 335, 339, 744, 768
SatI GCNGC 2 cut(s) 192, 789
Sau3AI GATC 2 cut(s) 168, 262
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 2 cut(s) 163, 753
SetI ASST 7 cut(s) 421, 472, 517, 609, 613, 826, 886
SfaNI GCATC 6 cut(s) 67, 119, 202, 238, 305, 823
SmiMI CAYNNNNRTG 2 cut(s) 176, 690
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SphI GCATGC 1 cut(s) 626
Sse9I AATT 6 cut(s) 243, 290, 336, 351, 492, 696
SsiI CCGC 3 cut(s) 53, 194, 837
SspI AATATT 2 cut(s) 845, 862
SspMI CTAG 2 cut(s) 114, 608
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 1 cut(s) 472
TasI AATT 6 cut(s) 243, 290, 336, 351, 492, 696
TfiI GAWTC 2 cut(s) 540, 555
Tru1I TTAA 5 cut(s) 222, 335, 339, 744, 768
Tru9I TTAA 5 cut(s) 222, 335, 339, 744, 768
TscAI CASTG 5 cut(s) 88, 97, 133, 156, 241
TseI GCWGC 2 cut(s) 191, 788
TspDTI ATGAA 2 cut(s) 261, 470
TspGWI ACGGA 2 cut(s) 533, 704
TspRI CASTG 5 cut(s) 88, 97, 133, 156, 241
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 626
XspI CTAG 2 cut(s) 114, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.