Rw2G016470

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000238
Physical Location & Seq
Reverse (-)
19546716 .. 19551511
4796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016470.1

Sequence Viewer

Length: 840 bp
ATGCCTTGTAGTTTGCTGTTTGTGGTTGTGAGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTGTGTGGTGCCCATGTGATCATGGGAGTGAGGAATATGGCTGCGGGTAAAGATGTGAAAGATGCGATAGTTAAGGAATTCCCCACTCCCAAAATTGATGCCATGGAGTTGGATCTTAGTTCATTGTCATCTGTGAGGAAATTTGCATCAGATTACAAATCCACTGGTCGTCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCGACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCGTATAGGTATGCTGCATTTGTGTTTGGGACTAATTGTTTTAAATTCTTTTTCCTCGTTTGCATGTCATTTTCTACTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACGTTCAAGTAGCAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCGGTTTGCATATCATGAAGGAATCCGTTTTGATAGAATCAACGACCCATCAGGGTACAGCAGTTGGCCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAACTTTCAAAACAAATAAAGTGGTGGTTGGTGACTTATTTTGGTAACCTTGATTTTACAAGATATATAGACAATATTATTATTACTTCCGCCATTGACATGCTTCCAAGCTTTGCGTCGAGGTCCAAACGATCAGGGAAGTGTTTTACAGCGCTAATCTATCGTATGCCTTGGTTAATCTGTGCCATGTTGTTCTTGGTACCATTCTTACTCTCTTACACTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

279

Amino Acids

31.19

Weight (kDa)

9.51

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 171 1.1e-15 short chain dehydrogenase
adh_short_C2 PF13561 13 - 120 3e-08 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 811
AccB1I GGYRCC 2 cut(s) 83, 811
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 119, 702
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 3 cut(s) 152, 215, 379
AcuI CTGAAG 2 cut(s) 305, 513
AdeI CACNNNGTG 1 cut(s) 80
AfaI GTAC 2 cut(s) 557, 813
AfeI AGCGCT 1 cut(s) 765
AfiI CCNNNNNNNGG 1 cut(s) 575
AflIII ACRYGT 1 cut(s) 62
AgeI ACCGGT 1 cut(s) 501
AgsI TTSAA 3 cut(s) 317, 456, 621
AluBI AGCT 4 cut(s) 497, 589, 593, 723
AluI AGCT 4 cut(s) 497, 589, 593, 723
AlwI GGATC 1 cut(s) 195
Aor51HI AGCGCT 1 cut(s) 765
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 2 cut(s) 116, 349
ApoI RAATTY 3 cut(s) 152, 215, 379
ArsI GACNNNNNNTTYG 2 cut(s) 406, 438
AsiGI ACCGGT 1 cut(s) 501
Asp718I GGTACC 1 cut(s) 811
AspLEI GCGC 1 cut(s) 766
AspS9I GGNCC 1 cut(s) 735
AsuHPI GGTGA 2 cut(s) 491, 655
AsuNHI GCTAGC 1 cut(s) 589
AvaII GGWCC 1 cut(s) 735
BaeGI GKGCMC 1 cut(s) 88
BaeI ACNNNNGTAYC 2 cut(s) 547, 580
BanI GGYRCC 2 cut(s) 83, 811
BbvI GCAGC 2 cut(s) 103, 336
BccI CCATC 1 cut(s) 556
BciVI GTATCC 2 cut(s) 424, 496
BclI TGATCA 1 cut(s) 93
BfaI CTAG 2 cut(s) 39, 590
BfoI RGCGCY 1 cut(s) 767
BfuI GTATCC 2 cut(s) 424, 496
BisI GCNGC 2 cut(s) 117, 350
BlsI GCNGC 2 cut(s) 118, 351
Bme18I GGWCC 1 cut(s) 735
BmgT120I GGNCC 1 cut(s) 735
BmiI GGNNCC 2 cut(s) 85, 813
BmsI GCATC 4 cut(s) 44, 127, 163, 230
BmtI GCTAGC 1 cut(s) 593
BsaJI CCNNGG 2 cut(s) 177, 782
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 177, 782
BseLI CCNNNNNNNGG 1 cut(s) 575
BseNI ACTGG 1 cut(s) 244
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 2 cut(s) 103, 336
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 568
BshNI GGYRCC 2 cut(s) 83, 811
BshTI ACCGGT 1 cut(s) 501
BsiSI CCGG 1 cut(s) 502
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 575
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 3 cut(s) 93, 187, 743
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 2 cut(s) 119, 702
BspANI GGCC 1 cut(s) 568
BspFNI CGCG 1 cut(s) 64
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 2 cut(s) 85, 813
BspOI GCTAGC 1 cut(s) 593
BspPI GGATC 1 cut(s) 195
BspT107I GGYRCC 2 cut(s) 83, 811
BsrFI RCCGGY 1 cut(s) 501
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 501
BssECI CCNNGG 2 cut(s) 177, 782
BssMI GATC 3 cut(s) 93, 187, 743
BssT1I CCWWGG 2 cut(s) 177, 782
Bst4CI ACNGT 2 cut(s) 78, 338
BstC8I GCNNGC 3 cut(s) 570, 591, 606
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 177
BstEII GGTNACC 1 cut(s) 656
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 1 cut(s) 766
BstKTI GATC 3 cut(s) 96, 190, 746
BstMBI GATC 3 cut(s) 93, 187, 743
BstNSI RCATGY 3 cut(s) 402, 608, 715
BstPI GGTNACC 1 cut(s) 656
BstSLI GKGCMC 1 cut(s) 88
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 103, 336
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 184
BstYI RGATCY 1 cut(s) 187
BsuI GTATCC 2 cut(s) 424, 496
BsuRI GGCC 1 cut(s) 568
BtgI CCRYGG 1 cut(s) 177
BtsIMutI CAGTG 3 cut(s) 51, 74, 237
Cac8I GCNNGC 3 cut(s) 570, 591, 606
CciI TCATGA 1 cut(s) 514
CfoI GCGC 1 cut(s) 766
Cfr10I RCCGGY 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 735
CseI GACGC 1 cut(s) 717
Csp6I GTAC 2 cut(s) 556, 812
CspAI ACCGGT 1 cut(s) 501
CspCI CAANNNNNGTGG 2 cut(s) 614, 649
CviAII CATG 8 cut(s) 89, 97, 178, 399, 515, 605, 712, 799
CviJI RGCY 6 cut(s) 116, 497, 568, 589, 593, 723
CviKI_1 RGCY 6 cut(s) 116, 497, 568, 589, 593, 723
CviQI GTAC 2 cut(s) 556, 812
DdeI CTNAG 1 cut(s) 191
DpnI GATC 3 cut(s) 95, 189, 745
DpnII GATC 3 cut(s) 93, 187, 743
DraI TTTAAA 1 cut(s) 378
DraIII CACNNNGTG 1 cut(s) 80
EciI GGCGGA 1 cut(s) 691
Eco130I CCWWGG 2 cut(s) 177, 782
Eco47I GGWCC 1 cut(s) 735
Eco47III AGCGCT 1 cut(s) 765
Eco57I CTGAAG 2 cut(s) 305, 513
Eco91I GGTNACC 1 cut(s) 656
EcoO65I GGTNACC 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 152
EcoT14I CCWWGG 2 cut(s) 177, 782
ErhI CCWWGG 2 cut(s) 177, 782
FaeI CATG 8 cut(s) 92, 100, 181, 402, 518, 608, 715, 802
FaqI GGGAC 1 cut(s) 378
FatI CATG 8 cut(s) 88, 96, 177, 398, 514, 604, 711, 798
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 117, 350
Fsp4HI GCNGC 2 cut(s) 117, 350
FspBI CTAG 2 cut(s) 39, 590
GlaI GCGC 1 cut(s) 765
GluI GCNGC 2 cut(s) 117, 350
HaeII RGCGCY 1 cut(s) 767
HaeIII GGCC 1 cut(s) 568
HapII CCGG 1 cut(s) 502
HgaI GACGC 1 cut(s) 717
HhaI GCGC 1 cut(s) 766
Hin1II CATG 8 cut(s) 92, 100, 181, 402, 518, 608, 715, 802
Hin6I GCGC 1 cut(s) 764
HinP1I GCGC 1 cut(s) 764
HindIII AAGCTT 1 cut(s) 721
HinfI GANTC 2 cut(s) 522, 537
HpaII CCGG 1 cut(s) 502
HphI GGTGA 2 cut(s) 491, 655
Hpy188I TCNGA 2 cut(s) 226, 493
Hpy188III TCNNGA 1 cut(s) 515
Hpy99I CGWCG 1 cut(s) 733
HpyAV CCTTC 2 cut(s) 461, 512
HpyCH4III ACNGT 2 cut(s) 78, 338
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 9 cut(s) 74, 221, 272, 352, 398, 449, 509, 572, 604
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 8 cut(s) 92, 100, 181, 402, 518, 608, 715, 802
HspAI GCGC 1 cut(s) 764
KpnI GGTACC 1 cut(s) 815
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 93, 187, 743
LpnPI CCDG 6 cut(s) 225, 258, 515, 537, 582, 732
Lsp1109I GCAGC 2 cut(s) 103, 336
LweI GCATC 4 cut(s) 44, 127, 163, 230
MaeI CTAG 2 cut(s) 39, 590
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 2 cut(s) 643, 656
MalI GATC 3 cut(s) 95, 189, 745
MboI GATC 3 cut(s) 93, 187, 743
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 8 cut(s) 152, 168, 215, 261, 276, 369, 379, 474
MluI ACGCGT 1 cut(s) 62
MmeI TCCRAC 2 cut(s) 165, 408
MnlI CCTC 6 cut(s) 99, 204, 258, 400, 499, 726
MseI TTAA 5 cut(s) 147, 260, 264, 377, 788
MslI CAYNNNNRTG 2 cut(s) 101, 710
MspI CCGG 1 cut(s) 502
MvnI CGCG 1 cut(s) 64
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 574
NdeII GATC 3 cut(s) 93, 187, 743
NheI GCTAGC 1 cut(s) 589
NlaIII CATG 8 cut(s) 92, 100, 181, 402, 518, 608, 715, 802
NlaIV GGNNCC 2 cut(s) 85, 813
NmuCI GTSAC 1 cut(s) 643
NspI RCATGY 3 cut(s) 402, 608, 715
PacI TTAATTAA 1 cut(s) 264
PaeI GCATGC 1 cut(s) 608
PagI TCATGA 1 cut(s) 514
PfeI GAWTC 2 cut(s) 522, 537
PinAI ACCGGT 1 cut(s) 501
PkrI GCNGC 2 cut(s) 118, 351
PspEI GGTNACC 1 cut(s) 656
PspN4I GGNNCC 2 cut(s) 85, 813
PspPI GGNCC 1 cut(s) 735
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 557, 813
RsaNI GTAC 2 cut(s) 556, 812
RseI CAYNNNNRTG 2 cut(s) 101, 710
SaqAI TTAA 5 cut(s) 147, 260, 264, 377, 788
SatI GCNGC 2 cut(s) 117, 350
Sau3AI GATC 3 cut(s) 93, 187, 743
Sau96I GGNCC 1 cut(s) 735
SduI GDGCHC 1 cut(s) 88
SetI ASST 8 cut(s) 346, 454, 499, 591, 595, 663, 725, 737
SfaNI GCATC 4 cut(s) 44, 127, 163, 230
SinI GGWCC 1 cut(s) 735
SmiMI CAYNNNNRTG 2 cut(s) 101, 710
SphI GCATGC 1 cut(s) 608
Sse9I AATT 8 cut(s) 152, 168, 215, 261, 276, 369, 379, 474
SsiI CCGC 2 cut(s) 119, 702
SspI AATATT 1 cut(s) 688
SspMI CTAG 2 cut(s) 39, 590
StyI CCWWGG 2 cut(s) 177, 782
TaaI ACNGT 2 cut(s) 78, 338
TaiI ACGT 1 cut(s) 454
TaqI TCGA 1 cut(s) 731
TasI AATT 8 cut(s) 152, 168, 215, 261, 276, 369, 379, 474
TfiI GAWTC 2 cut(s) 522, 537
Tru1I TTAA 5 cut(s) 147, 260, 264, 377, 788
Tru9I TTAA 5 cut(s) 147, 260, 264, 377, 788
TscAI CASTG 3 cut(s) 58, 81, 244
TseFI GTSAC 1 cut(s) 643
TseI GCWGC 2 cut(s) 116, 349
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 3 cut(s) 186, 452, 531
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 3 cut(s) 58, 81, 244
VpaK11BI GGWCC 1 cut(s) 735
XapI RAATTY 3 cut(s) 152, 215, 379
XceI RCATGY 3 cut(s) 402, 608, 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XspI CTAG 2 cut(s) 39, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.