MD01G1205400.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000238
Physical Location & Seq
Forward (+)
30062190 .. 30064829
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1205400.v1.1.491

Sequence Viewer

Length: 942 bp
ATGTGGTTCTTTAGAGGAAAAGGGCCATCAGGGTTCTCGTCATCTTCGACAGCAGAAGAAGTTACTCAAGGGGTTGATGCCACAGGTCTCACCGCCATTGTTACAGGAGCATCGAGTGGCATTGGCACCGAAACTGCACGCGTTCTTGCACTGCGCGGTGCCCATGTGGTTATGGCAGTGAGGAATGTGGCTGCCGGTAAAGATGTAAGAGAAGCAATAGTGAAGCAAATTCCCACTGCCAAAGTTGATGCCATGGAATTGGATCTCACTTCCTTATCATCCGTGAGAAAATTCGCATCGGATTTCAATTCCTCCGGCCTTCCTCTCAACATCCTAATTAACAATGCAGGAGTTATGGCAACCCCTTTCTTGCTTTCTAAGGACAAAATCGAACTCCAGTTCGCGACAAACCACGTAGGTCATTTTCTTTTGACAAACCTTTTGTTGGGTAATATGAAGAAAACAGCACGCAAAAGCAGCAAGCAAGGGAGAATTGTAAATGTGTCCTCAGAAGCTCACCGCTATCCATATCCTGAAGGAATTCGTTTTGATAAGATTAACGACCAAGCAGGGTACAGAAGCTATCTTGCATATGGCCAATCAAAGCTTGCTAACATTTTGCATGCTAACGAGCTTGCAAGACGTTTAAAGGAAGAAGGGGCAGATATAACAGCAAACTCACTTCACCCTGGTGTAATTGCTACCAATCTTTTCCGTTATAACAGCGCTATTAACGGGCTTGTTAACGGGATTGGTAGAGCTTTGCTTAAAAATGTTCAGCAGGGAGCAGCAACGACGTGCTACCTGGCACTGCATCCGCAAGTCAAGGGGGTGACCGGCGAATATTTTGCCGATAGTAACCTATCCAAGACAACGCAGCATGGGCAGGACGTCGAGATGGGAAAGAAGCTATGGGATTTCACCATGAATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

314

Amino Acids

33.77

Weight (kDa)

9.61

Isoelectric Point (pI)

21.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 180 2.4e-27 short chain dehydrogenase
KR PF08659 31 - 131 3.5e-08 KR domain
adh_short_C2 PF13561 36 - 282 4.1e-18 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
AatII GACGTC 1 cut(s) 894
AccB1I GGYRCC 2 cut(s) 125, 158
AccII CGCG 3 cut(s) 141, 156, 404
AciI CCGC 4 cut(s) 93, 156, 520, 818
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 595
AcsI RAATTY 4 cut(s) 228, 290, 540, 928
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 891
AfaI GTAC 1 cut(s) 575
AfeI AGCGCT 1 cut(s) 727
AfiI CCNNNNNNNGG 1 cut(s) 445
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 1 cut(s) 307
AjiI CACGTC 1 cut(s) 798
AjnI CCWGG 2 cut(s) 688, 804
AleI CACNNNNGTG 1 cut(s) 690
AluBI AGCT 6 cut(s) 515, 582, 607, 634, 761, 910
AluI AGCT 6 cut(s) 515, 582, 607, 634, 761, 910
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 270
Aor51HI AGCGCT 1 cut(s) 727
AoxI GGCC 3 cut(s) 23, 316, 595
ApeKI GCWGC 4 cut(s) 191, 477, 788, 877
ApoI RAATTY 4 cut(s) 228, 290, 540, 928
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 2 cut(s) 156, 728
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 5 cut(s) 82, 509, 677, 844, 913
BaeGI GKGCMC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 597
BanI GGYRCC 2 cut(s) 125, 158
BbvI GCAGC 4 cut(s) 178, 489, 800, 889
BccI CCATC 2 cut(s) 34, 892
BcgI CGANNNNNNTGC 2 cut(s) 830, 864
BciT130I CCWGG 2 cut(s) 690, 806
BcoDI GTCTC 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 729
BisI GCNGC 4 cut(s) 192, 478, 789, 878
BlsI GCNGC 4 cut(s) 193, 479, 790, 879
Bme1390I CCNGG 2 cut(s) 690, 806
BmgBI CACGTC 1 cut(s) 798
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 127, 160
BmrFI CCNGG 2 cut(s) 690, 806
BmsI GCATC 5 cut(s) 67, 119, 238, 305, 823
BpmI CTGGAG 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 252, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse118I RCCGGY 2 cut(s) 194, 836
Bse1I ACTGG 1 cut(s) 397
BseBI CCWGG 2 cut(s) 690, 806
BseDI CCNNGG 2 cut(s) 252, 688
BseGI GGATG 3 cut(s) 278, 330, 814
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 397
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 4 cut(s) 178, 489, 800, 889
BsgI GTGCAG 1 cut(s) 120
Bsh1236I CGCG 3 cut(s) 141, 156, 404
BshFI GGCC 3 cut(s) 25, 318, 597
BshNI GGYRCC 2 cut(s) 125, 158
BsiSI CCGG 3 cut(s) 195, 315, 837
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 3 cut(s) 25, 318, 597
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 262
Bsp19I CCATGG 1 cut(s) 252
Bsp68I TCGCGA 1 cut(s) 404
BspACI CCGC 4 cut(s) 93, 156, 520, 818
BspANI GGCC 3 cut(s) 25, 318, 597
BspCNI CTCAG 1 cut(s) 521
BspFNI CGCG 3 cut(s) 141, 156, 404
BspLI GGNNCC 2 cut(s) 127, 160
BspPI GGATC 1 cut(s) 270
BspT107I GGYRCC 2 cut(s) 125, 158
BspTNI GGTCTC 1 cut(s) 92
BsrFI RCCGGY 2 cut(s) 194, 836
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 2 cut(s) 194, 836
BssECI CCNNGG 2 cut(s) 252, 688
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 690, 806
BstACI GRCGYC 1 cut(s) 891
BstBAI YACGTR 1 cut(s) 415
BstC8I GCNNGC 6 cut(s) 139, 469, 482, 609, 624, 636
BstDEI CTNAG 2 cut(s) 378, 508
BstDSI CCRYGG 1 cut(s) 252
BstEII GGTNACC 1 cut(s) 832
BstF5I GGATG 3 cut(s) 278, 330, 814
BstFNI CGCG 3 cut(s) 141, 156, 404
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 2 cut(s) 156, 728
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 477, 883
BstNI CCWGG 2 cut(s) 690, 806
BstNSI RCATGY 1 cut(s) 626
BstPI GGTNACC 1 cut(s) 832
BstSCI CCNGG 2 cut(s) 688, 804
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 3 cut(s) 141, 156, 404
BstV1I GCAGC 4 cut(s) 178, 489, 800, 889
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 3 cut(s) 25, 318, 597
BtgI CCRYGG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 798
BtsCI GGATG 3 cut(s) 278, 330, 814
BtsI GCAGTG 4 cut(s) 149, 183, 234, 809
BtsIMutI CAGTG 4 cut(s) 149, 183, 234, 809
BtuMI TCGCGA 1 cut(s) 404
Cac8I GCNNGC 6 cut(s) 139, 469, 482, 609, 624, 636
CfoI GCGC 2 cut(s) 156, 728
Cfr10I RCCGGY 2 cut(s) 194, 836
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 574
CviAII CATG 5 cut(s) 164, 253, 623, 881, 925
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 2 cut(s) 378, 508
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraI TTTAAA 1 cut(s) 648
EaeI YGGCCR 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 92
Eco47III AGCGCT 1 cut(s) 727
Eco57I CTGAAG 1 cut(s) 555
Eco91I GGTNACC 1 cut(s) 832
EcoO65I GGTNACC 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 688, 804
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 5 cut(s) 167, 256, 626, 884, 928
FatI CATG 5 cut(s) 163, 252, 622, 880, 924
FauNDI CATATG 1 cut(s) 592
Fnu4HI GCNGC 4 cut(s) 192, 478, 789, 878
FokI GGATG 3 cut(s) 265, 317, 801
Fsp4HI GCNGC 4 cut(s) 192, 478, 789, 878
GlaI GCGC 2 cut(s) 155, 727
GluI GCNGC 4 cut(s) 192, 478, 789, 878
GsuI CTGGAG 1 cut(s) 380
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 3 cut(s) 25, 318, 597
HapII CCGG 3 cut(s) 195, 315, 837
HhaI GCGC 2 cut(s) 156, 728
Hin1I GRCGYC 1 cut(s) 891
Hin1II CATG 5 cut(s) 167, 256, 626, 884, 928
Hin6I GCGC 2 cut(s) 154, 726
HinP1I GCGC 2 cut(s) 154, 726
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 605
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 3 cut(s) 195, 315, 837
HphI GGTGA 5 cut(s) 82, 509, 677, 844, 913
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 2 cut(s) 301, 511
Hpy188III TCNNGA 3 cut(s) 403, 533, 895
Hpy8I GTNNAC 1 cut(s) 745
Hpy99I CGWCG 2 cut(s) 799, 896
HpyAV CCTTC 3 cut(s) 329, 530, 650
HpyCH4IV ACGT 4 cut(s) 414, 643, 797, 891
HpyCH4V TGCA 7 cut(s) 137, 149, 347, 590, 622, 638, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 477, 883
HpyF3I CTNAG 2 cut(s) 378, 508
HpySE526I ACGT 4 cut(s) 414, 643, 797, 891
Hsp92I GRCGYC 1 cut(s) 891
Hsp92II CATG 5 cut(s) 167, 256, 626, 884, 928
HspAI GCGC 2 cut(s) 154, 726
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 107, 785
Lsp1109I GCAGC 4 cut(s) 178, 489, 800, 889
LweI GCATC 5 cut(s) 67, 119, 238, 305, 823
MaeII ACGT 4 cut(s) 414, 643, 797, 891
MaeIII GTNAC 4 cut(s) 61, 100, 832, 857
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 4 cut(s) 36, 68, 469, 665
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 163
MlsI TGGCCA 1 cut(s) 597
MluCI AATT 9 cut(s) 228, 257, 290, 307, 336, 492, 540, 696, 928
MluI ACGCGT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 597
MnlI CCTC 5 cut(s) 8, 174, 322, 333, 517
Mox20I TGGCCA 1 cut(s) 597
MroXI GAANNNNTTC 1 cut(s) 540
MscI TGGCCA 1 cut(s) 597
MseI TTAA 6 cut(s) 339, 558, 647, 732, 744, 768
MslI CAYNNNNRTG 1 cut(s) 690
Msp20I TGGCCA 1 cut(s) 597
MspI CCGG 3 cut(s) 195, 315, 837
MspR9I CCNGG 2 cut(s) 690, 806
MvaI CCWGG 2 cut(s) 690, 806
MvnI CGCG 3 cut(s) 141, 156, 404
MwoI GCNNNNNNNGC 2 cut(s) 477, 883
NcoI CCATGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 592
NdeII GATC 1 cut(s) 262
NlaIII CATG 5 cut(s) 167, 256, 626, 884, 928
NlaIV GGNNCC 2 cut(s) 127, 160
NmuCI GTSAC 1 cut(s) 832
NruI TCGCGA 1 cut(s) 404
NspI RCATGY 1 cut(s) 626
OliI CACNNNNGTG 1 cut(s) 690
PaeI GCATGC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 540
PkrI GCNGC 4 cut(s) 193, 479, 790, 879
Ppu21I YACGTR 1 cut(s) 415
PsiI TTATAA 1 cut(s) 720
Psp6I CCWGG 2 cut(s) 688, 804
PspEI GGTNACC 1 cut(s) 832
PspGI CCWGG 2 cut(s) 688, 804
PspN4I GGNNCC 2 cut(s) 127, 160
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 262
RruI TCGCGA 1 cut(s) 404
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 690
SaqAI TTAA 6 cut(s) 339, 558, 647, 732, 744, 768
SatI GCNGC 4 cut(s) 192, 478, 789, 878
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 690, 806
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 5 cut(s) 67, 119, 238, 305, 823
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SphI GCATGC 1 cut(s) 626
Sse9I AATT 9 cut(s) 228, 257, 290, 307, 336, 492, 540, 696, 928
SsiI CCGC 4 cut(s) 93, 156, 520, 818
SspI AATATT 1 cut(s) 845
StyD4I CCNGG 2 cut(s) 688, 804
StyI CCWWGG 1 cut(s) 252
TaiI ACGT 4 cut(s) 417, 646, 800, 894
TaqI TCGA 4 cut(s) 47, 113, 390, 894
TasI AATT 9 cut(s) 228, 257, 290, 307, 336, 492, 540, 696, 928
Tru1I TTAA 6 cut(s) 339, 558, 647, 732, 744, 768
Tru9I TTAA 6 cut(s) 339, 558, 647, 732, 744, 768
TscAI CASTG 4 cut(s) 156, 183, 241, 816
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 4 cut(s) 191, 477, 788, 877
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 2 cut(s) 470, 941
TspGWI ACGGA 2 cut(s) 271, 704
TspRI CASTG 4 cut(s) 156, 183, 241, 816
XapI RAATTY 4 cut(s) 228, 290, 540, 928
XceI RCATGY 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 540
ZraI GACGTC 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.