FvH4_5g02642

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000238
Physical Location & Seq
Forward (+)
1579411 .. 1581923
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02642.t1

Sequence Viewer

Length: 957 bp
ATGGGAAAATTTAGCAAGAGAGGACTTTCTGGGTTCTCCGGCTCTTCCACTGCAGAAGAAGTTACTCAAGGAATTGATGGAACTAGTCTTACTGCCATTGTTACAGGAGCCACAAGTGGTATCGGTTTAGAGACACTGCGTGTTCTTGCGTTGCGAGGTGTCCATGTAGTGATGGCAATACGGAACATGAATTCTGGGAAGAAGGTGAGAGAAGCCATCCTAAGAGAAATTCCGGATGCTAAAATTGACGCTATGGAGTTGGATCTCAGCTCATTGGCCTCTGTAAGAAAATTTGCAGCAGACTATAATACCAAAGGCCTACCACTGAACATCCTTATTAACAATGCAGGGGTTATAACTCCATACAAGCTCTCTGAAGACAATATAGAGCTCCAGTTTGCAACTAATCATTTAGGCCATTTTCTTCTCACAAATCTCTTGTTGGAGAACATGAAACGCACATCACGAGAAAACAATAGAGAGGGGAGGATTGTTAATGTATCATCAGTTGCCCATAAATATTCGTACCATGAAGGAATTCGCTTTGATAAAATCAATGACGAATCAAGCTACAACAAGTACTTCGCATATGGCCAATCCAAGCTTGCAAATGTATTACATGCTAATGAGCTTACAAGGCGTCTGAAGGAAGAAGGGGTGGAGATAACTGCTAATTCTCTTCATCCCGGACTAATCCACACCAATATTGTGCGCTTTGGTGATGGTATTTTACATTATATTGCAAAGGTGCTGGGTGCATTTATGAGTCTTTTCATTAAATCAATTCAGCAGGGTGCAGCAACCACATGTTTTGTGGCACTTCATCCACAAGTTAATGGAGTAAGCGGCGAATATTTTGTTGACTGTAATGTTGCCGAAGCGAGCTCTTTGGCCAAAGATGAAGATTTGGCTACCAAACTCTGGGATTTGAGCTTGAGCTTGACCAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

319

Amino Acids

34.8

Weight (kDa)

7.8

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 178 8.3e-26 short chain dehydrogenase
KR PF08659 31 - 126 4.6e-07 KR domain
adh_short_C2 PF13561 36 - 242 1.6e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 921
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 1 cut(s) 846
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 2 cut(s) 592, 891
AcsI RAATTY 5 cut(s) 8, 190, 228, 290, 537
AcuI CTGAAG 2 cut(s) 396, 665
AcyI GRCGYC 1 cut(s) 640
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 2 cut(s) 527, 581
AfiI CCNNNNNNNGG 1 cut(s) 921
AflIII ACRYGT 1 cut(s) 806
AhlI ACTAGT 1 cut(s) 83
AluBI AGCT 9 cut(s) 270, 370, 391, 570, 604, 631, 885, 933, 939
AluI AGCT 9 cut(s) 270, 370, 391, 570, 604, 631, 885, 933, 939
Alw21I GWGCWC 2 cut(s) 393, 887
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 270
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 5 cut(s) 276, 316, 415, 592, 891
ApeKI GCWGC 2 cut(s) 296, 797
ApoI RAATTY 5 cut(s) 8, 190, 228, 290, 537
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 714
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 2 cut(s) 217, 731
BalI TGGCCA 2 cut(s) 594, 893
BanII GRGCYC 2 cut(s) 393, 887
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 393, 887
BbvI GCAGC 2 cut(s) 308, 809
BccI CCATC 4 cut(s) 71, 166, 224, 716
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 3 cut(s) 297, 798, 847
BlsI GCNGC 3 cut(s) 298, 799, 848
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 1 cut(s) 687
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 687
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 377
BpuEI CTTGAG 3 cut(s) 51, 935, 955
BpuMI CCSGG 1 cut(s) 687
BsaHI GRCGYC 1 cut(s) 640
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 921
Bse1I ACTGG 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 232
BseGI GGATG 5 cut(s) 216, 241, 330, 682, 823
BseLI CCNNNNNNNGG 1 cut(s) 921
BseMII CTCAG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 394
BseXI GCAGC 2 cut(s) 308, 809
BseYI CCCAGC 1 cut(s) 751
BsgI GTGCAG 1 cut(s) 816
BshFI GGCC 5 cut(s) 278, 318, 417, 594, 893
BsiHKAI GWGCWC 2 cut(s) 393, 887
BsiSI CCGG 3 cut(s) 39, 233, 687
BslI CCNNNNNNNGG 1 cut(s) 921
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 5 cut(s) 278, 318, 417, 594, 893
Bsp1286I GDGCHC 2 cut(s) 393, 887
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 846
BspANI GGCC 5 cut(s) 278, 318, 417, 594, 893
BspCNI CTCAG 1 cut(s) 279
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 1 cut(s) 270
BspQI GCTCTTC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 394
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 640
BssSI CACGAG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 2 cut(s) 49, 684
BstACI GRCGYC 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 606, 883
BstDEI CTNAG 2 cut(s) 221, 266
BstF5I GGATG 5 cut(s) 216, 241, 330, 682, 823
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstNSI RCATGY 2 cut(s) 623, 810
BstSCI CCNGG 1 cut(s) 685
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 308, 809
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 5 cut(s) 278, 318, 417, 594, 893
BtsCI GGATG 5 cut(s) 216, 241, 330, 682, 823
BtsI GCAGTG 2 cut(s) 48, 134
BtsIMutI CAGTG 3 cut(s) 48, 134, 323
Cac8I GCNNGC 2 cut(s) 606, 883
CfoI GCGC 1 cut(s) 714
CseI GACGC 2 cut(s) 257, 629
Csp6I GTAC 2 cut(s) 526, 580
CspCI CAANNNNNGTGG 2 cut(s) 793, 828
CviAII CATG 6 cut(s) 164, 187, 451, 530, 620, 807
CviQI GTAC 2 cut(s) 526, 580
DdeI CTNAG 2 cut(s) 221, 266
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraIII CACNNNGTG 1 cut(s) 140
EaeI YGGCCR 2 cut(s) 592, 891
Eam1104I CTCTTC 2 cut(s) 49, 684
EarI CTCTTC 2 cut(s) 49, 684
Ecl136II GAGCTC 2 cut(s) 391, 885
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 393, 887
Eco53kI GAGCTC 2 cut(s) 391, 885
Eco57I CTGAAG 2 cut(s) 396, 665
EcoICRI GAGCTC 2 cut(s) 391, 885
EcoRI GAATTC 2 cut(s) 190, 537
EcoT38I GRGCYC 2 cut(s) 393, 887
FaeI CATG 6 cut(s) 167, 190, 454, 533, 623, 810
FatI CATG 6 cut(s) 163, 186, 450, 529, 619, 806
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 3 cut(s) 297, 798, 847
FokI GGATG 5 cut(s) 203, 248, 317, 669, 810
FriOI GRGCYC 2 cut(s) 393, 887
Fsp4HI GCNGC 3 cut(s) 297, 798, 847
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 713
GluI GCNGC 3 cut(s) 297, 798, 847
GsaI CCCAGC 1 cut(s) 755
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 5 cut(s) 278, 318, 417, 594, 893
HapII CCGG 3 cut(s) 39, 233, 687
HgaI GACGC 2 cut(s) 257, 629
HhaI GCGC 1 cut(s) 714
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 6 cut(s) 167, 190, 454, 533, 623, 810
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 2 cut(s) 563, 766
HpaII CCGG 3 cut(s) 39, 233, 687
HphI GGTGA 2 cut(s) 217, 731
Hpy166II GTNNAC 1 cut(s) 862
Hpy188I TCNGA 2 cut(s) 376, 645
Hpy188III TCNNGA 2 cut(s) 233, 465
Hpy8I GTNNAC 1 cut(s) 862
HpyAV CCTTC 4 cut(s) 196, 527, 640, 647
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4V TGCA 8 cut(s) 53, 296, 347, 401, 608, 743, 758, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 2 cut(s) 221, 266
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 6 cut(s) 167, 190, 454, 533, 623, 810
HspAI GCGC 1 cut(s) 712
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 107, 396
Lsp1109I GCAGC 2 cut(s) 308, 809
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 61, 100
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 8 cut(s) 36, 68, 211, 389, 416, 662, 671, 914
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 393, 887
MlsI TGGCCA 2 cut(s) 594, 893
MluCI AATT 9 cut(s) 8, 72, 190, 228, 243, 290, 537, 673, 783
MluNI TGGCCA 2 cut(s) 594, 893
MlyI GAGTC 1 cut(s) 775
MmeI TCCRAC 2 cut(s) 240, 423
MnlI CCTC 5 cut(s) 14, 149, 289, 475, 480
Mox20I TGGCCA 2 cut(s) 594, 893
MroI TCCGGA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 537
MscI TGGCCA 2 cut(s) 594, 893
MseI TTAA 4 cut(s) 339, 495, 777, 834
MslI CAYNNNNRTG 1 cut(s) 624
Msp20I TGGCCA 2 cut(s) 594, 893
MspI CCGG 3 cut(s) 39, 233, 687
MspR9I CCNGG 1 cut(s) 687
MwoI GCNNNNNNNGC 1 cut(s) 637
NciI CCSGG 1 cut(s) 687
NdeI CATATG 1 cut(s) 589
NdeII GATC 1 cut(s) 262
NlaIII CATG 6 cut(s) 167, 190, 454, 533, 623, 810
NlaIV GGNNCC 1 cut(s) 109
NspI RCATGY 2 cut(s) 623, 810
PceI AGGCCT 1 cut(s) 318
PciI ACATGT 1 cut(s) 806
PciSI GCTCTTC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 563
PflMI CCANNNNNTGG 1 cut(s) 921
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 3 cut(s) 298, 799, 848
PleI GAGTC 1 cut(s) 774
PpsI GAGTC 1 cut(s) 774
PscI ACATGT 1 cut(s) 806
PsiI TTATAA 1 cut(s) 356
Psp124BI GAGCTC 2 cut(s) 393, 887
PspFI CCCAGC 1 cut(s) 751
PspN4I GGNNCC 1 cut(s) 109
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PstI CTGCAG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 2 cut(s) 527, 581
RsaNI GTAC 2 cut(s) 526, 580
RseI CAYNNNNRTG 1 cut(s) 624
SacI GAGCTC 2 cut(s) 393, 887
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 4 cut(s) 339, 495, 777, 834
SatI GCNGC 3 cut(s) 297, 798, 847
Sau3AI GATC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 1 cut(s) 775
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 2 cut(s) 393, 887
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 3 cut(s) 66, 934, 950
SmoI CTYRAG 3 cut(s) 66, 934, 950
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 9 cut(s) 8, 72, 190, 228, 243, 290, 537, 673, 783
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 1 cut(s) 846
SspI AATATT 3 cut(s) 521, 706, 854
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 2 cut(s) 393, 887
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 685
TaaI ACNGT 1 cut(s) 866
TasI AATT 9 cut(s) 8, 72, 190, 228, 243, 290, 537, 673, 783
TatI WGTACW 1 cut(s) 579
TauI GCSGC 1 cut(s) 849
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 4 cut(s) 339, 495, 777, 834
Tru9I TTAA 4 cut(s) 339, 495, 777, 834
TscAI CASTG 3 cut(s) 55, 141, 330
TseI GCWGC 2 cut(s) 296, 797
TspDTI ATGAA 7 cut(s) 203, 467, 546, 671, 763, 812, 915
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 3 cut(s) 55, 141, 330
Van91I CCANNNNNTGG 1 cut(s) 921
XapI RAATTY 5 cut(s) 8, 190, 228, 290, 537
XceI RCATGY 2 cut(s) 623, 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.