MD07G1274300.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000238
Physical Location & Seq
Forward (+)
33982512 .. 33983382
871 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1274300.v1.1.491

Sequence Viewer

Length: 348 bp
ATGTTTTTTTTTTTAATAATAGATGTGGTTCTTGAGAAGAGAAGGAAATGGCCATCTGGGTTCTCATCATCTTCCACAGCAGAGGAAGTTACTGAAGGGATTGATGCCACTGGAGCATCTAGTGGTATTGGCACCGAAACTGCACGCGTTCTTGCACTGCGTGGCGCCCATGTGGTTATGGCTGTGAGAACCATGGCAGCCGGTAAAGATGCAAGAGAACAAATAGTGAAGGCAATCCCCAGTGCCAAAGTTGATGCCATGGAACTGGATCTCAGTTCGCTATCATCCGTTAGGAAATTCGCATCGGATTTCAATTCCTCCGGTCTTCCTCTTAACATCCTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

116

Amino Acids

12.26

Weight (kDa)

6.57

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 37 - 114 1.5e-09 short chain dehydrogenase
adh_short_C2 PF13561 38 - 107 7.1e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 131, 164
AccII CGCG 1 cut(s) 147
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 1 cut(s) 313
AlwI GGATC 1 cut(s) 276
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 296
AspLEI GCGC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 52
BanI GGYRCC 2 cut(s) 131, 164
BbsI GAAGAC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 61
BfaI CTAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 133, 166
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 5 cut(s) 94, 125, 199, 244, 311
BmuI ACTGGG 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 192, 258
BsaWI WCCGGW 1 cut(s) 320
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 3 cut(s) 115, 240, 270
BseDI CCNNGG 2 cut(s) 192, 258
BseGI GGATG 2 cut(s) 284, 336
BseMII CTCAG 1 cut(s) 286
BseNI ACTGG 3 cut(s) 115, 240, 270
BseXI GCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 52
BshNI GGYRCC 2 cut(s) 131, 164
BsiSI CCGG 2 cut(s) 201, 321
BsnI GGCC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 268
Bsp19I CCATGG 2 cut(s) 192, 258
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 133, 166
BspPI GGATC 1 cut(s) 276
BspT107I GGYRCC 2 cut(s) 131, 164
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 3 cut(s) 115, 240, 270
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 192, 258
BssMI GATC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 192, 258
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 2 cut(s) 192, 258
BstF5I GGATG 2 cut(s) 284, 336
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 52
BtgI CCRYGG 2 cut(s) 192, 258
BtsCI GGATG 2 cut(s) 284, 336
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 3 cut(s) 108, 155, 247
Cac8I GCNNGC 1 cut(s) 145
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 200
CviAII CATG 3 cut(s) 170, 193, 259
CviJI RGCY 3 cut(s) 52, 182, 200
CviKI_1 RGCY 3 cut(s) 52, 182, 200
DdeI CTNAG 1 cut(s) 272
DinI GGCGCC 1 cut(s) 166
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DraIII CACNNNGTG 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 192, 258
Eco57I CTGAAG 1 cut(s) 114
EcoT14I CCWWGG 2 cut(s) 192, 258
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
ErhI CCWWGG 2 cut(s) 192, 258
FaeI CATG 3 cut(s) 173, 196, 262
FaiI YATR 4 cut(s) 171, 179, 194, 260
FatI CATG 3 cut(s) 169, 192, 258
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 271, 323
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 1 cut(s) 52
HapII CCGG 2 cut(s) 201, 321
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 173, 196, 262
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HpaII CCGG 2 cut(s) 201, 321
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 36, 89, 223
HpyCH4V TGCA 3 cut(s) 143, 155, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 272
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 173, 196, 262
HspAI GCGC 1 cut(s) 165
KasI GGCGCC 1 cut(s) 164
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 42, 96, 214, 251, 253, 334
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 5 cut(s) 94, 125, 199, 244, 311
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 49, 63, 317
MflI RGATCY 1 cut(s) 268
MlsI TGGCCA 1 cut(s) 52
MluCI AATT 2 cut(s) 296, 313
MluI ACGCGT 1 cut(s) 145
MluNI TGGCCA 1 cut(s) 52
Mly113I GGCGCC 1 cut(s) 165
MnlI CCTC 3 cut(s) 76, 328, 339
Mox20I TGGCCA 1 cut(s) 52
MscI TGGCCA 1 cut(s) 52
MseI TTAA 2 cut(s) 14, 333
MslI CAYNNNNRTG 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 52
MspI CCGG 2 cut(s) 201, 321
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 113
NarI GGCGCC 1 cut(s) 165
NcoI CCATGG 2 cut(s) 192, 258
NdeII GATC 1 cut(s) 268
NlaIII CATG 3 cut(s) 173, 196, 262
NlaIV GGNNCC 2 cut(s) 133, 166
PkrI GCNGC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 133, 166
PsuI RGATCY 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 2 cut(s) 14, 333
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 268
SfaNI GCATC 5 cut(s) 94, 125, 199, 244, 311
SfoI GGCGCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 296, 313
SspDI GGCGCC 1 cut(s) 164
SspMI CTAG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 192, 258
TasI AATT 2 cut(s) 296, 313
Tru1I TTAA 2 cut(s) 14, 333
Tru9I TTAA 2 cut(s) 14, 333
TscAI CASTG 3 cut(s) 115, 162, 247
TseI GCWGC 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 3 cut(s) 115, 162, 247
XapI RAATTY 1 cut(s) 296
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.