Prupe.2G298000_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000238
Physical Location & Seq
Forward (+)
28767224 .. 28775980
8757 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G298000.5

Sequence Viewer

Length: 942 bp
ATGTGGTTTTTTAGAAGAAAAGGGCCATCTGGGTTCTCATCGTCTTCAACGGCAGAAGAAGTTACTCAAGGGATTGATGCCAGTGGTCTCACTGCCATTGTTACAGGAGCATCCAGTGGTATTGGCACCGAAACTACACGCGTTCTTGCACTGCGTGGTGCCCATGTGATTATGGGAGTGAGGAATATGGCTGCTGGTAAAGATGTGAAAGAAGCAATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATTGAATTGGATCTCAGTTCATTATCATCTGTGAGGAAATTTGCCTCAGAGTTTAATTCCTCTGGTCGTCCTCTAAACATTCTAATTAACAATGCAGGAATTATGGCCACCCCTTTCATGCTTTCGAAAGACAACATAGAACTTCAGTTTGCCACAAACCACGTAGGTCATTTTCTTTTGACAAATCTTTTATTGGATACTATGAAAAAAACAGCACATAAAAGCAGCAAAGAAGGGAGAATTGTAAATGTGTCCTCAGAAGCTCACCGGTATCCATATCGGGAAGGAATCCGTTTTGATAAAATTAACGACCCATCAGGGTACAGCAGTTTTGCTGCATACGGTCAATCCAAGCTTGCTAACATTTTGCACGCTAATGAGCTTGCAAAACGTTTAAAGGAAGATGGAGCAGATATAACTGCAAACTCACTTCACCCTGGTGCAATTGTTACGAATCTTTTCCGTCACAACAGCACCATTAATGGGCTTGTTCATTTGCTCGGTAGAGCTGTGCTTAAAAGTGTTCAGCAGGGTGCAGCAACAACATGCTACGTGGCACTGCATCCACAAGTGAAGGGGGTAACAGGTGAATATTTTTCAGACAGTAACCTAGCCAAGCCAAGGCCACAAGGTCAAGACTTGGACTTGGCGAAGAAACTCTGGGATTTCAGCATGGATTTGGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

314

Amino Acids

33.88

Weight (kDa)

9.38

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 125, 158
AccII CGCG 1 cut(s) 141
AclI AACGTT 1 cut(s) 643
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 380
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 2 cut(s) 735, 873
AflIII ACRYGT 1 cut(s) 139
AgeI ACCGGT 1 cut(s) 519
AgsI TTSAA 2 cut(s) 48, 257
AjnI CCWGG 1 cut(s) 688
AleI CACNNNNGTG 1 cut(s) 690
AluBI AGCT 4 cut(s) 515, 607, 634, 761
AluI AGCT 4 cut(s) 515, 607, 634, 761
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 270
AoxI GGCC 3 cut(s) 23, 357, 875
ApeKI GCWGC 4 cut(s) 191, 477, 587, 788
ApoI RAATTY 1 cut(s) 290
AseI ATTAAT 1 cut(s) 732
AsiGI ACCGGT 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 710
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 3 cut(s) 509, 677, 851
AsuII TTCGAA 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BalI TGGCCA 1 cut(s) 359
BanI GGYRCC 2 cut(s) 125, 158
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 4 cut(s) 178, 489, 574, 800
BccI CCATC 3 cut(s) 34, 574, 650
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 690
BciVI GTATCC 2 cut(s) 442, 534
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 863
BfuI GTATCC 2 cut(s) 442, 534
BisI GCNGC 4 cut(s) 192, 478, 588, 789
BlsI GCNGC 4 cut(s) 193, 479, 589, 790
Bme1390I CCNGG 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 127, 160
BmrFI CCNGG 1 cut(s) 690
BmsI GCATC 4 cut(s) 67, 119, 238, 823
BpiI GAAGAC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 51
BsaAI YACGTR 2 cut(s) 415, 805
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 688, 872
BsaWI WCCGGW 1 cut(s) 519
Bsc4I CCNNNNNNNGG 2 cut(s) 735, 873
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 2 cut(s) 81, 114
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 2 cut(s) 688, 872
BseGI GGATG 2 cut(s) 110, 814
BseLI CCNNNNNNNGG 2 cut(s) 735, 873
BseMII CTCAG 3 cut(s) 280, 312, 522
BseNI ACTGG 2 cut(s) 81, 114
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 4 cut(s) 178, 489, 574, 800
BsgI GTGCAG 1 cut(s) 807
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 3 cut(s) 25, 359, 877
BshNI GGYRCC 2 cut(s) 125, 158
BshTI ACCGGT 1 cut(s) 519
BsiSI CCGG 1 cut(s) 520
BslI CCNNNNNNNGG 2 cut(s) 735, 873
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 3 cut(s) 25, 359, 877
Bso31I GGTCTC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 262
BspANI GGCC 3 cut(s) 25, 359, 877
BspCNI CTCAG 3 cut(s) 279, 311, 521
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 127, 160
BspPI GGATC 1 cut(s) 270
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 2 cut(s) 125, 158
BspTNI GGTCTC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 2 cut(s) 81, 114
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 2 cut(s) 688, 872
BssMI GATC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 872
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 596, 857
BstBAI YACGTR 2 cut(s) 415, 805
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 609, 624, 636
BstDEI CTNAG 3 cut(s) 266, 298, 508
BstF5I GGATG 2 cut(s) 110, 814
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 801
BstSCI CCNGG 1 cut(s) 688
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 178, 489, 574, 800
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 2 cut(s) 442, 534
BsuRI GGCC 3 cut(s) 25, 359, 877
BtsCI GGATG 2 cut(s) 110, 814
BtsI GCAGTG 4 cut(s) 90, 149, 234, 809
BtsIMutI CAGTG 6 cut(s) 88, 90, 121, 149, 234, 809
Cac8I GCNNGC 3 cut(s) 609, 624, 636
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 574
CspAI ACCGGT 1 cut(s) 519
CviAII CATG 4 cut(s) 164, 370, 798, 925
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 3 cut(s) 266, 298, 508
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DraI TTTAAA 1 cut(s) 648
DraIII CACNNNGTG 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 872
Eco31I GGTCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 1 cut(s) 872
ErhI CCWWGG 1 cut(s) 872
FaeI CATG 4 cut(s) 167, 373, 801, 928
FatI CATG 4 cut(s) 163, 369, 797, 924
Fnu4HI GCNGC 4 cut(s) 192, 478, 588, 789
FokI GGATG 2 cut(s) 97, 801
Fsp4HI GCNGC 4 cut(s) 192, 478, 588, 789
FspBI CTAG 1 cut(s) 863
GluI GCNGC 4 cut(s) 192, 478, 588, 789
HaeIII GGCC 3 cut(s) 25, 359, 877
HapII CCGG 1 cut(s) 520
Hin1II CATG 4 cut(s) 167, 373, 801, 928
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 2 cut(s) 540, 706
HpaII CCGG 1 cut(s) 520
HphI GGTGA 3 cut(s) 509, 677, 851
Hpy188I TCNGA 3 cut(s) 301, 511, 853
Hpy188III TCNNGA 2 cut(s) 533, 887
HpyAV CCTTC 3 cut(s) 479, 530, 820
HpyCH4III ACNGT 2 cut(s) 596, 857
HpyCH4IV ACGT 3 cut(s) 414, 643, 804
HpyCH4V TGCA 9 cut(s) 149, 347, 590, 622, 638, 674, 695, 788, 814
HpyF3I CTNAG 3 cut(s) 266, 298, 508
HpySE526I ACGT 3 cut(s) 414, 643, 804
Hsp92II CATG 4 cut(s) 167, 373, 801, 928
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 107, 659
Lsp1109I GCAGC 4 cut(s) 178, 489, 574, 800
LweI GCATC 4 cut(s) 67, 119, 238, 823
MaeI CTAG 1 cut(s) 863
MaeII ACGT 3 cut(s) 414, 643, 804
MaeIII GTNAC 6 cut(s) 61, 100, 700, 716, 832, 857
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 5 cut(s) 27, 36, 68, 665, 916
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 163
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 9 cut(s) 243, 257, 290, 307, 336, 351, 492, 555, 696
MluI ACGCGT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 359
MnlI CCTC 6 cut(s) 174, 279, 307, 322, 333, 517
Mox20I TGGCCA 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 710
MscI TGGCCA 1 cut(s) 359
MseI TTAA 7 cut(s) 222, 306, 339, 558, 647, 732, 768
MslI CAYNNNNRTG 2 cut(s) 627, 690
Msp20I TGGCCA 1 cut(s) 359
MspI CCGG 1 cut(s) 520
MspR9I CCNGG 1 cut(s) 690
MunI CAATTG 1 cut(s) 696
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 141
NdeII GATC 1 cut(s) 262
NlaIII CATG 4 cut(s) 167, 373, 801, 928
NlaIV GGNNCC 2 cut(s) 127, 160
NmuCI GTSAC 1 cut(s) 716
NspI RCATGY 1 cut(s) 801
NspV TTCGAA 1 cut(s) 377
OliI CACNNNNGTG 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 2 cut(s) 540, 706
PinAI ACCGGT 1 cut(s) 519
PkrI GCNGC 4 cut(s) 193, 479, 589, 790
Ppu21I YACGTR 2 cut(s) 415, 805
PshBI ATTAAT 1 cut(s) 732
Psp1406I AACGTT 1 cut(s) 643
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 127, 160
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 627, 690
SaqAI TTAA 7 cut(s) 222, 306, 339, 558, 647, 732, 768
SatI GCNGC 4 cut(s) 192, 478, 588, 789
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 4 cut(s) 67, 119, 238, 823
SfuI TTCGAA 1 cut(s) 377
SmiMI CAYNNNNRTG 2 cut(s) 627, 690
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 9 cut(s) 243, 257, 290, 307, 336, 351, 492, 555, 696
SspI AATATT 1 cut(s) 845
SspMI CTAG 1 cut(s) 863
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 2 cut(s) 596, 857
TaiI ACGT 3 cut(s) 417, 646, 807
TaqI TCGA 1 cut(s) 377
TasI AATT 9 cut(s) 243, 257, 290, 307, 336, 351, 492, 555, 696
TfiI GAWTC 2 cut(s) 540, 706
Tru1I TTAA 7 cut(s) 222, 306, 339, 558, 647, 732, 768
Tru9I TTAA 7 cut(s) 222, 306, 339, 558, 647, 732, 768
TscAI CASTG 6 cut(s) 88, 97, 121, 156, 241, 816
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 4 cut(s) 191, 477, 587, 788
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 4 cut(s) 261, 358, 470, 734
TspGWI ACGGA 2 cut(s) 533, 704
TspRI CASTG 6 cut(s) 88, 97, 121, 156, 241, 816
VspI ATTAAT 1 cut(s) 732
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 801
XmnI GAANNNNTTC 1 cut(s) 710
XspI CTAG 1 cut(s) 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.