Rh7BG165400

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000238
Physical Location & Seq
Reverse (-)
12836580 .. 12838774
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG165400.1

Sequence Viewer

Length: 960 bp
ATGGGGATATTCAGCAAGAAAGGAGCATCAGGGTTCTCGGCCTCTTCCACAGCAGAACAAGTTACCCAAGGGATTGATGGAACTGGTCTTACTTCAATTGTTACAGGAGCCTCAAGTGGTATTGGCGTAGAGACAGCGCGTGTTCTTGCATTGCGCGGTGTTCATGTAATAATGGCAGTAAGGAATATAGATGCTGGTACCAATGTTAAAGAAGCAATCCTTAAAGAAATCCCCAGTGCTAAGATTGATGTCATGGAGTTAGATCTCAGCTCATTGGCATCCGTAAGAAAATTTGCAGCAGAGTATAATTCCAAAGGCCTTCCCTTGAATATCCTTATTAACAATGCAGGGGTCATGGCAGATAAATTCAAGCTATCTCAAGACAACATAGAACTCGATTTTGCAACTAACCATTTAGGTCATTTTCTTCTCACAAATCTTCTGTTAGATAACATGAAAGTGATGAAACACACATCAAGAAAAAGCAGCATAGAGGGGAGAATTGTTAATGTATCATCATTTGGCCATAGATATATATACCGTGAAGGAATTCGTTTTGATAGTATTAATGACGAATCAAGGTACAACAAATCTGTTGCCTATGCAGAATCCAAGCTCGCCAACATATTGCATGCTAATGAGCTTACAAGGCGCCTCAAGGAAGAAAGGGTTGAGATAACTGCTAATTCTCTTCATCCTGGAATAATTCGCACCAATATTATGCATAATGATATCGGTGTAAAGTGTGTTCTTAAGGTGCTCAGGATACTTTCTTTGAGCAAAACTATTCAGCAGGGAGCAGCAACCACATGCTTTTTGGCACTGAATCCACAAGTTAAGGGAGTAAGCGGTGAATACTATGCGGATTGTAACATTGCCAAACCGATATCTCAGGCAAATGATGCAGATTTGGCTAAGAGACTCTGGGATTTTAGCTTGAGTTTGACCAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

319

Amino Acids

34.78

Weight (kDa)

9.22

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KR PF08659 32 - 149 4.4e-08 KR domain
adh_short PF00106 33 - 243 5.5e-27 short chain dehydrogenase
adh_short_C2 PF13561 36 - 285 3.5e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 2 cut(s) 197, 651
AccII CGCG 2 cut(s) 139, 156
AciI CCGC 3 cut(s) 156, 849, 863
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 3 cut(s) 290, 365, 549
AcyI GRCGYC 1 cut(s) 652
AfaI GTAC 2 cut(s) 199, 584
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 3 cut(s) 96, 328, 370
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 5 cut(s) 270, 373, 616, 643, 936
AluI AGCT 5 cut(s) 270, 373, 616, 643, 936
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 2 cut(s) 125, 913
AoxI GGCC 3 cut(s) 39, 316, 523
ApeKI GCWGC 3 cut(s) 296, 486, 800
ApoI RAATTY 3 cut(s) 290, 365, 549
AseI ATTAAT 1 cut(s) 567
Asp700I GAANNNNTTC 1 cut(s) 549
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 3 cut(s) 139, 156, 654
AsuHPI GGTGA 1 cut(s) 863
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BalI TGGCCA 1 cut(s) 525
BanI GGYRCC 2 cut(s) 197, 651
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 3 cut(s) 308, 498, 812
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 699
BciVI GTATCC 1 cut(s) 759
BcoDI GTCTC 2 cut(s) 125, 913
BfoI RGCGCY 1 cut(s) 655
BfrI CTTAAG 1 cut(s) 752
BfuI GTATCC 1 cut(s) 759
BglII AGATCT 1 cut(s) 262
BisI GCNGC 3 cut(s) 297, 487, 801
BlsI GCNGC 3 cut(s) 298, 488, 802
Bme1390I CCNGG 1 cut(s) 699
BmiI GGNNCC 3 cut(s) 109, 199, 653
BmrFI CCNGG 1 cut(s) 699
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 4 cut(s) 35, 181, 287, 892
BmuI ACTGGG 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 761
BpuEI CTTGAG 5 cut(s) 97, 363, 641, 938, 958
BsaHI GRCGYC 1 cut(s) 652
BsaJI CCNNGG 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 88, 234
Bse3DI GCAATG 2 cut(s) 149, 873
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 2 cut(s) 278, 694
BseMI GCAATG 2 cut(s) 149, 873
BseMII CTCAG 3 cut(s) 280, 775, 905
BseNI ACTGG 2 cut(s) 88, 234
BseXI GCAGC 3 cut(s) 308, 498, 812
Bsh1236I CGCG 2 cut(s) 139, 156
BshFI GGCC 3 cut(s) 41, 318, 525
BshNI GGYRCC 2 cut(s) 197, 651
BsiHKAI GWGCWC 1 cut(s) 762
BsmAI GTCTC 2 cut(s) 125, 913
BsnI GGCC 3 cut(s) 41, 318, 525
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 3 cut(s) 156, 849, 863
BspANI GGCC 3 cut(s) 41, 318, 525
BspCNI CTCAG 3 cut(s) 279, 774, 904
BspFNI CGCG 2 cut(s) 139, 156
BspLI GGNNCC 3 cut(s) 109, 199, 653
BspT107I GGYRCC 2 cut(s) 197, 651
BspTI CTTAAG 1 cut(s) 752
BsrDI GCAATG 2 cut(s) 149, 873
BsrI ACTGG 2 cut(s) 88, 234
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 652
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 2 cut(s) 49, 696
BstACI GRCGYC 1 cut(s) 652
BstAFI CTTAAG 1 cut(s) 752
BstAPI GCANNNNNTGC 1 cut(s) 902
BstC8I GCNNGC 2 cut(s) 618, 633
BstDEI CTNAG 5 cut(s) 240, 266, 761, 891, 915
BstF5I GGATG 2 cut(s) 278, 694
BstFNI CGCG 2 cut(s) 139, 156
BstH2I RGCGCY 1 cut(s) 655
BstHHI GCGC 3 cut(s) 139, 156, 654
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 2 cut(s) 125, 913
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 649, 902, 911
BstNI CCWGG 1 cut(s) 699
BstNSI RCATGY 2 cut(s) 635, 813
BstSCI CCNGG 1 cut(s) 697
BstUI CGCG 2 cut(s) 139, 156
BstV1I GCAGC 3 cut(s) 308, 498, 812
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 3 cut(s) 41, 318, 525
BtsCI GGATG 2 cut(s) 278, 694
BtsIMutI CAGTG 2 cut(s) 241, 821
Cac8I GCNNGC 2 cut(s) 618, 633
CfoI GCGC 3 cut(s) 139, 156, 654
Csp6I GTAC 2 cut(s) 198, 583
CviAII CATG 6 cut(s) 164, 253, 355, 454, 632, 810
CviQI GTAC 2 cut(s) 198, 583
DdeI CTNAG 5 cut(s) 240, 266, 761, 891, 915
DinI GGCGCC 1 cut(s) 653
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 2 cut(s) 49, 696
EarI CTCTTC 2 cut(s) 49, 696
Eco130I CCWWGG 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 318
Eco32I GATATC 2 cut(s) 733, 888
EcoRI GAATTC 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 697
EcoRV GATATC 2 cut(s) 733, 888
EcoT14I CCWWGG 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 726
EgeI GGCGCC 1 cut(s) 653
EheI GGCGCC 1 cut(s) 653
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 6 cut(s) 167, 256, 358, 457, 635, 813
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 6 cut(s) 163, 252, 354, 453, 631, 809
Fnu4HI GCNGC 3 cut(s) 297, 487, 801
FokI GGATG 2 cut(s) 265, 681
Fsp4HI GCNGC 3 cut(s) 297, 487, 801
GlaI GCGC 3 cut(s) 138, 155, 653
GluI GCNGC 3 cut(s) 297, 487, 801
HaeII RGCGCY 1 cut(s) 655
HaeIII GGCC 3 cut(s) 41, 318, 525
HhaI GCGC 3 cut(s) 139, 156, 654
Hin1I GRCGYC 1 cut(s) 652
Hin1II CATG 6 cut(s) 167, 256, 358, 457, 635, 813
Hin6I GCGC 3 cut(s) 137, 154, 652
HinP1I GCGC 3 cut(s) 137, 154, 652
HinfI GANTC 4 cut(s) 575, 608, 826, 921
HphI GGTGA 1 cut(s) 863
Hpy188III TCNNGA 3 cut(s) 380, 477, 763
HpyAV CCTTC 2 cut(s) 329, 539
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4V TGCA 8 cut(s) 149, 296, 347, 404, 605, 631, 724, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 649, 902, 911
HpyF3I CTNAG 5 cut(s) 240, 266, 761, 891, 915
Hsp92I GRCGYC 1 cut(s) 652
Hsp92II CATG 6 cut(s) 167, 256, 358, 457, 635, 813
HspAI GCGC 3 cut(s) 137, 154, 652
KasI GGCGCC 1 cut(s) 651
KpnI GGTACC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 3 cut(s) 23, 107, 797
Lsp1109I GCAGC 3 cut(s) 308, 498, 812
LweI GCATC 4 cut(s) 35, 181, 287, 892
MaeIII GTNAC 3 cut(s) 61, 100, 869
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 5 cut(s) 36, 419, 431, 674, 683
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 762
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 8 cut(s) 96, 290, 307, 365, 501, 549, 685, 705
MluNI TGGCCA 1 cut(s) 525
Mly113I GGCGCC 1 cut(s) 652
MlyI GAGTC 1 cut(s) 915
MnlI CCTC 4 cut(s) 52, 121, 487, 665
Mox20I TGGCCA 1 cut(s) 525
Mph1103I ATGCAT 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 549
MscI TGGCCA 1 cut(s) 525
MseI TTAA 7 cut(s) 207, 222, 339, 507, 567, 753, 837
MslI CAYNNNNRTG 2 cut(s) 458, 636
Msp20I TGGCCA 1 cut(s) 525
MspCI CTTAAG 1 cut(s) 752
MspR9I CCNGG 1 cut(s) 699
MunI CAATTG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 2 cut(s) 139, 156
MwoI GCNNNNNNNGC 3 cut(s) 649, 902, 911
NarI GGCGCC 1 cut(s) 652
NdeII GATC 1 cut(s) 262
NlaIII CATG 6 cut(s) 167, 256, 358, 457, 635, 813
NlaIV GGNNCC 3 cut(s) 109, 199, 653
NmeAIII GCCGAG 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 726
NspI RCATGY 2 cut(s) 635, 813
PaeI GCATGC 1 cut(s) 635
PceI AGGCCT 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 3 cut(s) 575, 608, 826
PfoI TCCNGGA 1 cut(s) 697
PkrI GCNGC 3 cut(s) 298, 488, 802
PleI GAGTC 1 cut(s) 915
PluTI GGCGCC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 915
PshBI ATTAAT 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 697
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 3 cut(s) 109, 199, 653
PsrI GAACNNNNNNTAC 4 cut(s) 73, 105, 732, 764
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 2 cut(s) 199, 584
RsaNI GTAC 2 cut(s) 198, 583
RseI CAYNNNNRTG 2 cut(s) 458, 636
SaqAI TTAA 7 cut(s) 207, 222, 339, 507, 567, 753, 837
SatI GCNGC 3 cut(s) 297, 487, 801
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 1 cut(s) 915
ScrFI CCNGG 1 cut(s) 699
SduI GDGCHC 1 cut(s) 762
SetI ASST 8 cut(s) 272, 375, 421, 584, 618, 645, 759, 938
SfaNI GCATC 4 cut(s) 35, 181, 287, 892
SfoI GGCGCC 1 cut(s) 653
SmiMI CAYNNNNRTG 2 cut(s) 458, 636
SmlI CTYRAG 6 cut(s) 112, 378, 656, 752, 937, 953
SmoI CTYRAG 6 cut(s) 112, 378, 656, 752, 937, 953
SphI GCATGC 1 cut(s) 635
Sse9I AATT 8 cut(s) 96, 290, 307, 365, 501, 549, 685, 705
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 3 cut(s) 156, 849, 863
SspDI GGCGCC 1 cut(s) 651
SspI AATATT 1 cut(s) 718
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 542
TaqI TCGA 1 cut(s) 396
TasI AATT 8 cut(s) 96, 290, 307, 365, 501, 549, 685, 705
TfiI GAWTC 3 cut(s) 575, 608, 826
Tru1I TTAA 7 cut(s) 207, 222, 339, 507, 567, 753, 837
Tru9I TTAA 7 cut(s) 207, 222, 339, 507, 567, 753, 837
TscAI CASTG 2 cut(s) 241, 828
TseI GCWGC 3 cut(s) 296, 486, 800
TspDTI ATGAA 4 cut(s) 152, 470, 479, 683
TspGWI ACGGA 1 cut(s) 271
TspRI CASTG 2 cut(s) 241, 828
Vha464I CTTAAG 1 cut(s) 752
VspI ATTAAT 1 cut(s) 567
XapI RAATTY 3 cut(s) 290, 365, 549
XceI RCATGY 2 cut(s) 635, 813
XcmI CCANNNNNNNNNTGG 2 cut(s) 74, 814
XmnI GAANNNNTTC 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.