Rmu_sc0013422.1_g000001

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013422.1
OG0000238
Physical Location & Seq
Reverse (-)
6006 .. 6320
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013422.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atgttgcttgaacttaagtttgttttttttcttttttttgtgggaatattttctttggctcctgatgttgtattgacaggagcatctagtggcattggcgctgaaactacgcgtgttcttgcactgtgtggtgcccatgtgatcatgggagtgaggaatatggctgcgggtaaagatgtgaaagatgcaatagttaaggaaatccccactcccaaaattgatgccatggagttggatcttagttcattgtcatctgtgaggaaatttgcatcagattacaaatccactggtcgtcctgtaaacatcttaatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

104

Amino Acids

11.15

Weight (kDa)

7.88

Isoelectric Point (pI)

19.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccII CGCG 1 cut(s) 112
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 128
AflII CTTAAG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 1 cut(s) 11
AlwI GGATC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 151
BclI TGATCA 1 cut(s) 141
BfaI CTAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 60, 133
BmsI GCATC 4 cut(s) 92, 175, 211, 278
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 141, 235
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 1 cut(s) 167
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 60, 133
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 131
BspTI CTTAAG 1 cut(s) 14
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 141, 235
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 144, 238
BstMBI GATC 2 cut(s) 141, 235
BstSLI GKGCMC 1 cut(s) 136
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 122, 285
CfoI GCGC 1 cut(s) 101
CviAII CATG 3 cut(s) 137, 145, 226
CviJI RGCY 2 cut(s) 59, 164
CviKI_1 RGCY 2 cut(s) 59, 164
DdeI CTNAG 1 cut(s) 239
DpnI GATC 2 cut(s) 143, 237
DpnII GATC 2 cut(s) 141, 235
DraIII CACNNNGTG 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 3 cut(s) 140, 148, 229
FaiI YATR 4 cut(s) 138, 146, 161, 227
FatI CATG 3 cut(s) 136, 144, 225
FauI CCCGC 1 cut(s) 160
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 102
HhaI GCGC 1 cut(s) 101
Hin1II CATG 3 cut(s) 140, 148, 229
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 122, 188, 269
HpyF3I CTNAG 1 cut(s) 239
Hsp92II CATG 3 cut(s) 140, 148, 229
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 2 cut(s) 141, 235
LmnI GCTCC 2 cut(s) 64, 80
LpnPI CCDG 4 cut(s) 63, 75, 273, 309
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 4 cut(s) 92, 175, 211, 278
MaeI CTAG 1 cut(s) 87
MalI GATC 2 cut(s) 143, 237
MboI GATC 2 cut(s) 141, 235
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 2 cut(s) 216, 263
MluI ACGCGT 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 147, 252
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 3 cut(s) 15, 195, 308
MslI CAYNNNNRTG 2 cut(s) 149, 308
MspCI CTTAAG 1 cut(s) 14
MvnI CGCG 1 cut(s) 112
NcoI CCATGG 1 cut(s) 225
NdeII GATC 2 cut(s) 141, 235
NlaIII CATG 3 cut(s) 140, 148, 229
NlaIV GGNNCC 2 cut(s) 60, 133
PdmI GAANNNNTTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 60, 133
PsuI RGATCY 1 cut(s) 235
RseI CAYNNNNRTG 2 cut(s) 149, 308
SaqAI TTAA 3 cut(s) 15, 195, 308
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 2 cut(s) 141, 235
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 4 cut(s) 92, 175, 211, 278
SmiMI CAYNNNNRTG 2 cut(s) 149, 308
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 216, 263
SsiI CCGC 1 cut(s) 167
SspI AATATT 1 cut(s) 48
SspMI CTAG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 126
TasI AATT 2 cut(s) 216, 263
Tru1I TTAA 3 cut(s) 15, 195, 308
Tru9I TTAA 3 cut(s) 15, 195, 308
TscAI CASTG 2 cut(s) 129, 292
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 2 cut(s) 129, 292
Vha464I CTTAAG 1 cut(s) 14
XapI RAATTY 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.