FvH4_5g02641

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000238
Physical Location & Seq
Forward (+)
1575761 .. 1578164
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02641.t1

Sequence Viewer

Length: 948 bp
ATGGGACTGTTTAGCAAGAAAGGACCTTCTGGGTTCTCTTCAACTTCCACAGCGGAGGAAGTTACACAAGGGATTGATGCAACTGGTCTTACTGCCATTGTTACAGGAGCCTCTAGTGGTATTGGCACGGAGACAACGCGTGTTCTTGTGTTGCGTGGTGCTCATGTAGTCATGTCAGTGAGGAACAAGGATGCTGGGACTAATGTCAAAGAAGCAATCCTTAAGGAAATTCCGGATGCTAAAATTGATGTTATGGAGTTAGACCTCAGTTCATTGGCATCTGTTAGAAAGTTTGCAGAAGGTTACATTACCTTGGGTCTTCCATTGAATATTCTTATTAACAATGCAGGGGTTATGGCAAGCCCATTCAAGCTTTCTCAAGACAACATTGAACTCCAATTTGCAACTAACCATTTAGGTCATTTTCTTCTGACGGATCTTCTGTTGGAGACTATGAAAAACACCACAAAAGAAAGCAACATTGAGGGGAGAATTGTTAACTTATCATCCCTCGGCCATCAATACAGCTACCCTGAGGGAATTCGTTTTGATGCAATCAATGATGAATCAAAATACAAAAAATATTATGCTTATGGACAATCCAAGCTTGCAAACGTATTGCATGCTAAAGAACTTAACAGGCGTCTCAAGGAAGAAGGAGTGGATATAACAGCTAACGCTGTTCACCCTGGAACAATTCTCACCAGTCTTACGCGCTATGATAACCTTTTACATAATGCTATGAAGATGCTGCATGTATTCTTCGCTAAATCTATTCCTCAGGGAGCAGCAACCACATGCTTTGTGGCACTGAATCCACAAGTTAAGGGAGTAAGCGGCGAATACTTTGTGGACTGTAATGTTGCCAAGTCGAGCTCTCAGGCAAAAGATGCAGATTTGGCTACTAAACTCTGGGATTTCAGCATGACCTTGACCAAAGTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

316

Amino Acids

34.21

Weight (kDa)

7.75

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 239 1.3e-28 short chain dehydrogenase
KR PF08659 31 - 121 2.6e-06 KR domain
adh_short_C2 PF13561 36 - 281 4.4e-17 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 139, 715
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 2 cut(s) 53, 837
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 514
AcsI RAATTY 2 cut(s) 228, 540
AcyI GRCGYC 1 cut(s) 643
AflII CTTAAG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 4 cut(s) 42, 328, 370, 392
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 5 cut(s) 373, 528, 607, 674, 876
AluI AGCT 5 cut(s) 373, 528, 607, 674, 876
Alw21I GWGCWC 2 cut(s) 163, 878
Alw26I GTCTC 3 cut(s) 125, 443, 650
AlwI GGATC 1 cut(s) 444
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 2 cut(s) 751, 788
ApoI RAATTY 2 cut(s) 228, 540
AspLEI GCGC 1 cut(s) 717
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 677, 694
AvaII GGWCC 1 cut(s) 23
AxyI CCTNAGG 2 cut(s) 534, 780
BanII GRGCYC 1 cut(s) 878
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 163, 878
BbvI GCAGC 2 cut(s) 738, 800
BccI CCATC 1 cut(s) 525
BciT130I CCWGG 1 cut(s) 690
BcoDI GTCTC 3 cut(s) 125, 443, 650
BfaI CTAG 1 cut(s) 114
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 3 cut(s) 752, 789, 838
BlsI GCNGC 3 cut(s) 753, 790, 839
Bme1390I CCNGG 1 cut(s) 690
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 690
BmsI GCATC 7 cut(s) 67, 181, 226, 287, 541, 738, 880
BoxI GACNNNNGTC 2 cut(s) 203, 938
BpiI GAAGAC 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 363, 632
BsaHI GRCGYC 1 cut(s) 643
BsaJI CCNNGG 3 cut(s) 312, 511, 688
BsaWI WCCGGW 1 cut(s) 232
Bse1I ACTGG 2 cut(s) 88, 705
Bse21I CCTNAGG 2 cut(s) 534, 780
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 3 cut(s) 312, 511, 688
BseGI GGATG 3 cut(s) 196, 241, 506
BseMII CTCAG 4 cut(s) 280, 525, 794, 893
BseNI ACTGG 2 cut(s) 88, 705
BseXI GCAGC 2 cut(s) 738, 800
BseYI CCCAGC 1 cut(s) 194
Bsh1236I CGCG 2 cut(s) 139, 715
BshFI GGCC 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 163, 878
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 18, 211
BsmAI GTCTC 3 cut(s) 125, 443, 650
BsmBI CGTCTC 1 cut(s) 650
BsmFI GGGAC 2 cut(s) 18, 211
BsnI GGCC 1 cut(s) 516
Bsp1286I GDGCHC 2 cut(s) 163, 878
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 2 cut(s) 53, 837
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 4 cut(s) 279, 526, 793, 892
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 2 cut(s) 139, 715
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 444
BspTI CTTAAG 1 cut(s) 221
BsrI ACTGG 2 cut(s) 88, 705
BssECI CCNNGG 3 cut(s) 312, 511, 688
BssMI GATC 1 cut(s) 436
BssNI GRCGYC 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 9, 857
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 643
BstAFI CTTAAG 1 cut(s) 221
BstAPI GCANNNNNTGC 1 cut(s) 890
BstC8I GCNNGC 3 cut(s) 361, 609, 624
BstDEI CTNAG 4 cut(s) 266, 534, 780, 879
BstF5I GGATG 3 cut(s) 196, 241, 506
BstFNI CGCG 2 cut(s) 139, 715
BstHHI GCGC 1 cut(s) 717
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 3 cut(s) 125, 443, 650
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 2 cut(s) 890, 899
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 3 cut(s) 626, 758, 801
BstPAI GACNNNNGTC 2 cut(s) 203, 938
BstSCI CCNGG 1 cut(s) 688
BstUI CGCG 2 cut(s) 139, 715
BstV1I GCAGC 2 cut(s) 738, 800
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
Bsu36I CCTNAGG 2 cut(s) 534, 780
BsuRI GGCC 1 cut(s) 516
BtsCI GGATG 3 cut(s) 196, 241, 506
BtsIMutI CAGTG 2 cut(s) 183, 809
Cac8I GCNNGC 3 cut(s) 361, 609, 624
CfoI GCGC 1 cut(s) 717
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 1 cut(s) 632
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviAII CATG 6 cut(s) 164, 172, 623, 755, 798, 925
CviJI RGCY 9 cut(s) 110, 363, 373, 516, 528, 607, 674, 876, 902
CviKI_1 RGCY 9 cut(s) 110, 363, 373, 516, 528, 607, 674, 876, 902
DdeI CTNAG 4 cut(s) 266, 534, 780, 879
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 876
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 878
Eco47I GGWCC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 876
Eco81I CCTNAGG 2 cut(s) 534, 780
EcoICRI GAGCTC 1 cut(s) 876
EcoO109I RGGNCCY 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 878
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 650
FaeI CATG 6 cut(s) 167, 175, 626, 758, 801, 928
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 2 cut(s) 18, 211
FatI CATG 6 cut(s) 163, 171, 622, 754, 797, 924
Fnu4HI GCNGC 3 cut(s) 752, 789, 838
FokI GGATG 3 cut(s) 203, 248, 493
FriOI GRGCYC 1 cut(s) 878
Fsp4HI GCNGC 3 cut(s) 752, 789, 838
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 716
GluI GCNGC 3 cut(s) 752, 789, 838
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 516
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 632
HhaI GCGC 1 cut(s) 717
Hin1I GRCGYC 1 cut(s) 643
Hin1II CATG 6 cut(s) 167, 175, 626, 758, 801, 928
Hin6I GCGC 1 cut(s) 715
HinP1I GCGC 1 cut(s) 715
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 2 cut(s) 371, 605
HinfI GANTC 2 cut(s) 566, 814
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 677, 694
Hpy166II GTNNAC 3 cut(s) 499, 685, 853
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 2 cut(s) 233, 380
Hpy8I GTNNAC 3 cut(s) 499, 685, 853
HpyAV CCTTC 3 cut(s) 36, 293, 650
HpyCH4III ACNGT 2 cut(s) 9, 857
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 9 cut(s) 80, 296, 347, 404, 554, 611, 622, 754, 893
HpyF10VI GCNNNNNNNGC 2 cut(s) 890, 899
HpyF3I CTNAG 4 cut(s) 266, 534, 780, 879
HpySE526I ACGT 1 cut(s) 615
Hsp92I GRCGYC 1 cut(s) 643
Hsp92II CATG 6 cut(s) 167, 175, 626, 758, 801, 928
HspAI GCGC 1 cut(s) 715
Kpn2I TCCGGA 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 2 cut(s) 107, 785
Lsp1109I GCAGC 2 cut(s) 738, 800
LweI GCATC 7 cut(s) 67, 181, 226, 287, 541, 738, 880
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 3 cut(s) 61, 100, 302
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 7 cut(s) 30, 311, 419, 431, 665, 754, 757
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 163, 878
MluCI AATT 6 cut(s) 228, 243, 398, 492, 540, 696
MluI ACGCGT 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 8 cut(s) 49, 121, 174, 275, 478, 521, 529, 789
MroI TCCGGA 1 cut(s) 232
MseI TTAA 5 cut(s) 222, 339, 498, 636, 825
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 53
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 690
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 2 cut(s) 139, 715
MwoI GCNNNNNNNGC 2 cut(s) 890, 899
NdeII GATC 1 cut(s) 436
NlaIII CATG 6 cut(s) 167, 175, 626, 758, 801, 928
NlaIV GGNNCC 1 cut(s) 109
NmeAIII GCCGAG 1 cut(s) 492
NspI RCATGY 3 cut(s) 626, 758, 801
PaeI GCATGC 1 cut(s) 626
PfeI GAWTC 2 cut(s) 566, 814
PkrI GCNGC 3 cut(s) 753, 790, 839
PpuMI RGGWCCY 1 cut(s) 23
PshAI GACNNNNGTC 2 cut(s) 203, 938
Psp124BI GAGCTC 1 cut(s) 878
Psp5II RGGWCCY 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 688
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 23
PspPPI RGGWCCY 1 cut(s) 23
PsuI RGATCY 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 878
SaqAI TTAA 5 cut(s) 222, 339, 498, 636, 825
SatI GCNGC 3 cut(s) 752, 789, 838
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 2 cut(s) 163, 878
SfaNI GCATC 7 cut(s) 67, 181, 226, 287, 541, 738, 880
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 3 cut(s) 221, 378, 647
SmoI CTYRAG 3 cut(s) 221, 378, 647
SphI GCATGC 1 cut(s) 626
Sse9I AATT 6 cut(s) 228, 243, 398, 492, 540, 696
SsiI CCGC 2 cut(s) 53, 837
SspI AATATT 2 cut(s) 331, 584
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 878
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 9, 857
TaiI ACGT 1 cut(s) 618
TaqI TCGA 1 cut(s) 872
TasI AATT 6 cut(s) 228, 243, 398, 492, 540, 696
TauI GCSGC 1 cut(s) 840
TfiI GAWTC 2 cut(s) 566, 814
Tru1I TTAA 5 cut(s) 222, 339, 498, 636, 825
Tru9I TTAA 5 cut(s) 222, 339, 498, 636, 825
TscAI CASTG 2 cut(s) 183, 816
TseI GCWGC 2 cut(s) 751, 788
TspDTI ATGAA 4 cut(s) 261, 470, 579, 758
TspGWI ACGGA 2 cut(s) 143, 449
TspRI CASTG 2 cut(s) 183, 816
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 2 cut(s) 228, 540
XceI RCATGY 3 cut(s) 626, 758, 801
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.