Rroxscaffold_4G00280990

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000238
Physical Location & Seq
Reverse (-)
3417217 .. 3420661
3445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280990.1

Sequence Viewer

Length: 1023 bp
ATGTGGTTCTTTAGAAGAAAAGGCCCATCTGGGTTCTCATCATCTTCCACAGCAGAAGAAGTTACTCAAGGGATTGATGCCACTGGTCTCACTGCCATTGTTACAGACCTTGCAGTTCTTACAAGGTCTTATGGAATATTTTCTTTGGCTCCGGATGCTGTATTGACAGGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTGCGTGGTGCCCATGTGATCATGGGAGTGAGGAATATGGCTGTGGGTAAAGATGTGAAAGATGCGATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATGGAGTTGGATCTTAGTTCATTGTCATCTGTGAGGAAATTTGCATCAGATTACAAATCCGCTGGTCGTCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCAACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCATATAGGTCATTTTCTATTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACGTTCAAGTAGCAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCGGTATGCATATCGTGAAGGAATCCGTTTTGACAGAATCAACGACCCATCAGGGTACAGCAGTTGGCATGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCTAAAGAACTTTCAAAACAATTAAAGGAAGATGGGGCAAATATAACTGCAAATGCACTTCACCCTGGTGTAATTCTCACCAATCTTTTCCGTCATAACATTGTTATCAATGGTAATCATGTCATTCATGGGCTTGTTAATGTGCTCGGTAGAGTTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACAACTTGCTATGTGGCACTGCATCCGCAAGCTAAAGGGGTGAGCGGTGAATATTTTTCAGACAGTAATATTTCCAAGCCAAGACCTCAAGCTGAAGATGAGTTGTTGGCAAAGAAGCTCTGGGATTTCAGCAAGGATTTGACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

340

Amino Acids

36.96

Weight (kDa)

9.48

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 53 - 199 3e-24 short chain dehydrogenase
KR PF08659 54 - 152 9.6e-07 KR domain
adh_short_C2 PF13561 57 - 308 5.1e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 918
AccII CGCG 1 cut(s) 202
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 3 cut(s) 375, 899, 918
AclWI GGATC 1 cut(s) 333
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 3 cut(s) 443, 594, 987
AdeI CACNNNGTG 1 cut(s) 218
AfaI GTAC 1 cut(s) 638
AflIII ACRYGT 1 cut(s) 200
AgeI ACCGGT 1 cut(s) 582
AgsI TTSAA 3 cut(s) 455, 537, 702
AjnI CCWGG 1 cut(s) 751
AleI CACNNNNGTG 1 cut(s) 753
AluBI AGCT 6 cut(s) 578, 670, 674, 905, 965, 991
AluI AGCT 6 cut(s) 578, 670, 674, 905, 965, 991
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 333
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 869
ApoI RAATTY 1 cut(s) 353
ArsI GACNNNNNNTTYG 2 cut(s) 487, 519
AsiGI ACCGGT 1 cut(s) 582
Asp700I GAANNNNTTC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 5 cut(s) 572, 740, 757, 925, 932
AsuNHI GCTAGC 1 cut(s) 670
BaeGI GKGCMC 1 cut(s) 226
BaeI ACNNNNGTAYC 2 cut(s) 628, 661
BanI GGYRCC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 1 cut(s) 881
BccI CCATC 3 cut(s) 34, 637, 713
BciT130I CCWGG 1 cut(s) 753
BciVI GTATCC 2 cut(s) 505, 577
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 177, 671
BfuI GTATCC 2 cut(s) 505, 577
BisI GCNGC 1 cut(s) 870
BlsI GCNGC 1 cut(s) 871
Bme1390I CCNGG 1 cut(s) 753
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 150, 223
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 7 cut(s) 67, 145, 182, 265, 301, 368, 904
BmtI GCTAGC 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 51, 945
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 315, 751
BsaWI WCCGGW 2 cut(s) 151, 582
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 1 cut(s) 88
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 2 cut(s) 315, 751
BseGI GGATG 2 cut(s) 160, 895
BseNI ACTGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 1 cut(s) 881
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 221
BshTI ACCGGT 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 834
BsiSI CCGG 2 cut(s) 152, 583
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 226, 834
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 2 cut(s) 231, 325
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 3 cut(s) 375, 899, 918
BspANI GGCC 1 cut(s) 24
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 150, 223
BspOI GCTAGC 1 cut(s) 674
BspPI GGATC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 918
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 2 cut(s) 315, 751
BssMI GATC 2 cut(s) 231, 325
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 1 cut(s) 938
BstC8I GCNNGC 4 cut(s) 651, 672, 687, 903
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 160, 895
BstFNI CGCG 1 cut(s) 202
BstKTI GATC 2 cut(s) 234, 328
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 231, 325
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 2 cut(s) 653, 689
BstSCI CCNGG 1 cut(s) 751
BstSLI GKGCMC 1 cut(s) 226
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 881
BstX2I RGATCY 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 1 cut(s) 325
BsuI GTATCC 2 cut(s) 505, 577
BsuRI GGCC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 160, 895
BtsI GCAGTG 4 cut(s) 90, 212, 297, 890
BtsIMutI CAGTG 6 cut(s) 81, 90, 189, 212, 297, 890
Cac8I GCNNGC 4 cut(s) 651, 672, 687, 903
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 637
CspAI ACCGGT 1 cut(s) 582
CviAII CATG 7 cut(s) 227, 235, 316, 650, 686, 806, 815
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 1 cut(s) 329
DpnI GATC 2 cut(s) 233, 327
DpnII GATC 2 cut(s) 231, 325
DraIII CACNNNGTG 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 92
Eco57I CTGAAG 3 cut(s) 443, 594, 987
EcoRII CCWGG 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 315
EcoT22I ATGCAT 2 cut(s) 592, 655
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 7 cut(s) 230, 238, 319, 653, 689, 809, 818
FatI CATG 7 cut(s) 226, 234, 315, 649, 685, 805, 814
FauNDI CATATG 1 cut(s) 655
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 870
FokI GGATG 2 cut(s) 167, 882
Fsp4HI GCNGC 1 cut(s) 870
FspBI CTAG 2 cut(s) 177, 671
GluI GCNGC 1 cut(s) 870
HaeIII GGCC 1 cut(s) 24
HapII CCGG 2 cut(s) 152, 583
Hin1II CATG 7 cut(s) 230, 238, 319, 653, 689, 809, 818
HinfI GANTC 2 cut(s) 603, 618
HpaII CCGG 2 cut(s) 152, 583
HphI GGTGA 5 cut(s) 572, 740, 757, 925, 932
Hpy188I TCNGA 3 cut(s) 364, 574, 934
Hpy188III TCNNGA 2 cut(s) 152, 596
HpyAV CCTTC 2 cut(s) 542, 593
HpyCH4III ACNGT 1 cut(s) 938
HpyCH4IV ACGT 1 cut(s) 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 7 cut(s) 230, 238, 319, 653, 689, 809, 818
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 2 cut(s) 231, 325
LmnI GCTCC 3 cut(s) 154, 170, 866
Lsp1109I GCAGC 1 cut(s) 881
LweI GCATC 7 cut(s) 67, 145, 182, 265, 301, 368, 904
MaeI CTAG 2 cut(s) 177, 671
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 2 cut(s) 61, 100
MalI GATC 2 cut(s) 233, 327
MbiI CCGCTC 1 cut(s) 918
MboI GATC 2 cut(s) 231, 325
MboII GAAGA 5 cut(s) 27, 36, 68, 728, 980
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 2 cut(s) 226, 834
MluCI AATT 7 cut(s) 306, 353, 399, 414, 555, 707, 759
MluI ACGCGT 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 303, 489
MnlI CCTC 5 cut(s) 237, 342, 396, 580, 969
Mph1103I ATGCAT 2 cut(s) 592, 655
MroI TCCGGA 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 6 cut(s) 285, 398, 402, 710, 825, 849
MslI CAYNNNNRTG 4 cut(s) 239, 585, 654, 753
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 2 cut(s) 152, 583
MspR9I CCNGG 1 cut(s) 753
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 155
NcoI CCATGG 1 cut(s) 315
NdeI CATATG 1 cut(s) 655
NdeII GATC 2 cut(s) 231, 325
NheI GCTAGC 1 cut(s) 670
NlaIII CATG 7 cut(s) 230, 238, 319, 653, 689, 809, 818
NlaIV GGNNCC 2 cut(s) 150, 223
NsiI ATGCAT 2 cut(s) 592, 655
NspI RCATGY 2 cut(s) 653, 689
OliI CACNNNNGTG 1 cut(s) 753
PacI TTAATTAA 1 cut(s) 402
PaeI GCATGC 2 cut(s) 653, 689
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 603, 618
PinAI ACCGGT 1 cut(s) 582
PkrI GCNGC 1 cut(s) 871
Psp6I CCWGG 1 cut(s) 751
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 2 cut(s) 150, 223
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
RseI CAYNNNNRTG 4 cut(s) 239, 585, 654, 753
SaqAI TTAA 6 cut(s) 285, 398, 402, 710, 825, 849
SatI GCNGC 1 cut(s) 870
Sau3AI GATC 2 cut(s) 231, 325
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 2 cut(s) 226, 834
SfaNI GCATC 7 cut(s) 67, 145, 182, 265, 301, 368, 904
SmiMI CAYNNNNRTG 4 cut(s) 239, 585, 654, 753
SmlI CTYRAG 2 cut(s) 66, 960
SmoI CTYRAG 2 cut(s) 66, 960
SphI GCATGC 2 cut(s) 653, 689
Sse9I AATT 7 cut(s) 306, 353, 399, 414, 555, 707, 759
SsiI CCGC 3 cut(s) 375, 899, 918
SspI AATATT 3 cut(s) 138, 926, 943
SspMI CTAG 2 cut(s) 177, 671
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 938
TaiI ACGT 1 cut(s) 535
TasI AATT 7 cut(s) 306, 353, 399, 414, 555, 707, 759
TfiI GAWTC 2 cut(s) 603, 618
Tru1I TTAA 6 cut(s) 285, 398, 402, 710, 825, 849
Tru9I TTAA 6 cut(s) 285, 398, 402, 710, 825, 849
TscAI CASTG 6 cut(s) 88, 97, 196, 219, 304, 897
TseI GCWGC 1 cut(s) 869
TspDTI ATGAA 3 cut(s) 324, 533, 803
TspGWI ACGGA 2 cut(s) 596, 767
TspRI CASTG 6 cut(s) 88, 97, 196, 219, 304, 897
XapI RAATTY 1 cut(s) 353
XceI RCATGY 2 cut(s) 653, 689
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 2 cut(s) 177, 671
Zsp2I ATGCAT 2 cut(s) 592, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.