RchiOBHm_Chr7g0197431

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000238
Physical Location & Seq
Reverse (-)
15358198 .. 15361125
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17662

Sequence Viewer

Length: 948 bp
ATGGGACTCTTTAGCAAGAAAGGGCCTTCTGGGTTTTCTTCAACTTCCACAGCAGAGGAAGTTACACAAGGGATTGATGCAACTGGTCTTACTGTCATTGTTACAGGAGCCTCTAGTGGTATTGGCATGGAGACAATGCGTGTTCTTGTGTTGCGTGGTGCTCATGTGGTCATGGCAGTGAGGAACAAGGATGCTGGGACAAATGTCAAAGAAGCACTTCTCAAAGAAATTCCGGATGCTAAAATTGATGTTATGGAGTTAGACCTCAGTTCATTGGCATCTGTAAGAAAGTTTGCAGAAGATTACATTGCCTTGGGTCTCCCATTGAATATTCTTATTAACAATGCAGGGGTTATGGCAAGCCCATTCAAGCTTTCTCAAGACAACATTGAACTCCAGTTTGCAACTAACCATTTAGGTCATTTTCTTCTGACAGATCTTCTGTTGGATACCATGAAAAGCACCTCAAGAGAAAGCAACATTGAGGGGAGAATTGTTAACTTATCATCACTCGGCCATCAATACAGCTACCGTGAAGGAATTCGTTTTGATGCAATTAATGATGAATCAAAATACAGCAAATACTATGCTTATGGACAATCCAAGCTTGCAAACATACTGCATGCTAAAGAGCTTAACAGGCGTCTCAAGGAAGAAGGAGTCGAGATAACTGCTAATGCTGTTCACCCTGGAGCAATTCTCACCAATCTTATGCGCTATGATAACTTTTTACATTCTGTTATGAAGGTGCTGCGTCCATTTATCACTAAATCTATTCCCCAGGGAGCAGCGACCACATGCTTTGTGGCACTGAATCCACAAGTCAAGGGAGTAAGTGGCGAATACTTTGTGGACTGTAATGTTGCCAAGCCGAGCTCTCAGGCAAAAGATGCAGATTTAGCTACCAAACTCTGGGATTTCAGCTTGACCTTGACCAATGTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

315

Amino Acids

34.35

Weight (kDa)

7.06

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 239 6.7e-29 short chain dehydrogenase
KR PF08659 31 - 122 8e-08 KR domain
adh_short_C2 PF13561 36 - 281 1e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 912
AccIII TCCGGA 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 514
AcsI RAATTY 2 cut(s) 228, 540
AcyI GRCGYC 1 cut(s) 643
AfiI CCNNNNNNNGG 1 cut(s) 912
AgsI TTSAA 4 cut(s) 42, 328, 370, 392
AjnI CCWGG 2 cut(s) 688, 780
AluBI AGCT 7 cut(s) 373, 528, 607, 634, 876, 902, 924
AluI AGCT 7 cut(s) 373, 528, 607, 634, 876, 902, 924
Alw21I GWGCWC 2 cut(s) 163, 878
Alw26I GTCTC 3 cut(s) 125, 323, 650
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 2 cut(s) 23, 514
ApeKI GCWGC 2 cut(s) 751, 788
ApoI RAATTY 2 cut(s) 228, 540
AseI ATTAAT 1 cut(s) 558
Asp700I GAANNNNTTC 2 cut(s) 216, 540
AspLEI GCGC 1 cut(s) 717
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 677, 694
BanII GRGCYC 1 cut(s) 878
Bbv12I GWGCWC 2 cut(s) 163, 878
BbvI GCAGC 2 cut(s) 738, 800
BccI CCATC 1 cut(s) 525
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 2 cut(s) 690, 782
BciVI GTATCC 1 cut(s) 442
BcoDI GTCTC 3 cut(s) 125, 323, 650
BfaI CTAG 1 cut(s) 114
BfuI GTATCC 1 cut(s) 442
BglII AGATCT 1 cut(s) 436
BisI GCNGC 2 cut(s) 752, 789
BlsI GCNGC 2 cut(s) 753, 790
Bme1390I CCNGG 2 cut(s) 690, 782
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 2 cut(s) 690, 782
BmsI GCATC 6 cut(s) 67, 181, 226, 287, 541, 880
BoxI GACNNNNGTC 2 cut(s) 203, 938
BplI GAGNNNNNCTC 2 cut(s) 684, 716
BpmI CTGGAG 2 cut(s) 380, 711
BpuEI CTTGAG 3 cut(s) 363, 451, 632
BsaHI GRCGYC 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 312, 688, 780, 781
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 912
Bse1I ACTGG 2 cut(s) 88, 397
Bse3DI GCAATG 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 2 cut(s) 690, 782
BseDI CCNNGG 4 cut(s) 312, 688, 780, 781
BseGI GGATG 2 cut(s) 196, 241
BseLI CCNNNNNNNGG 1 cut(s) 912
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 280, 893
BseNI ACTGG 2 cut(s) 88, 397
BseXI GCAGC 2 cut(s) 738, 800
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 2 cut(s) 25, 516
BsiHKAI GWGCWC 2 cut(s) 163, 878
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 18, 211
BslI CCNNNNNNNGG 1 cut(s) 912
BsmAI GTCTC 3 cut(s) 125, 323, 650
BsmBI CGTCTC 1 cut(s) 650
BsmFI GGGAC 2 cut(s) 18, 211
BsnI GGCC 2 cut(s) 25, 516
Bso31I GGTCTC 1 cut(s) 323
Bsp1286I GDGCHC 2 cut(s) 163, 878
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 436
BspANI GGCC 2 cut(s) 25, 516
BspCNI CTCAG 2 cut(s) 279, 892
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 2 cut(s) 88, 397
BssECI CCNNGG 4 cut(s) 312, 688, 780, 781
BssMI GATC 1 cut(s) 436
BssNI GRCGYC 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 690, 782
Bst4CI ACNGT 3 cut(s) 94, 533, 857
BstACI GRCGYC 1 cut(s) 643
BstAPI GCANNNNNTGC 1 cut(s) 890
BstC8I GCNNGC 3 cut(s) 361, 609, 624
BstDEI CTNAG 2 cut(s) 266, 879
BstF5I GGATG 2 cut(s) 196, 241
BstHHI GCGC 1 cut(s) 717
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 3 cut(s) 125, 323, 650
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 3 cut(s) 640, 890, 899
BstNI CCWGG 2 cut(s) 690, 782
BstNSI RCATGY 2 cut(s) 626, 801
BstPAI GACNNNNGTC 2 cut(s) 203, 938
BstSCI CCNGG 2 cut(s) 688, 780
BstV1I GCAGC 2 cut(s) 738, 800
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 2 cut(s) 25, 516
BtsCI GGATG 2 cut(s) 196, 241
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 809
Cac8I GCNNGC 3 cut(s) 361, 609, 624
CfoI GCGC 1 cut(s) 717
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 2 cut(s) 632, 743
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviAII CATG 6 cut(s) 127, 164, 172, 454, 623, 798
DdeI CTNAG 2 cut(s) 266, 879
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 514
Ecl136II GAGCTC 1 cut(s) 876
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 878
Eco31I GGTCTC 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 876
EcoICRI GAGCTC 1 cut(s) 876
EcoO109I RGGNCCY 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 688, 780
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 878
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 650
FaeI CATG 6 cut(s) 130, 167, 175, 457, 626, 801
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 2 cut(s) 18, 211
FatI CATG 6 cut(s) 126, 163, 171, 453, 622, 797
Fnu4HI GCNGC 2 cut(s) 752, 789
FokI GGATG 2 cut(s) 203, 248
FriOI GRGCYC 1 cut(s) 878
Fsp4HI GCNGC 2 cut(s) 752, 789
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 716
GluI GCNGC 2 cut(s) 752, 789
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 2 cut(s) 380, 711
HaeIII GGCC 2 cut(s) 25, 516
HapII CCGG 1 cut(s) 233
HgaI GACGC 2 cut(s) 632, 743
HhaI GCGC 1 cut(s) 717
Hin1I GRCGYC 1 cut(s) 643
Hin1II CATG 6 cut(s) 130, 167, 175, 457, 626, 801
Hin6I GCGC 1 cut(s) 715
HinP1I GCGC 1 cut(s) 715
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 2 cut(s) 371, 605
HinfI GANTC 4 cut(s) 6, 566, 660, 814
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 677, 694
Hpy166II GTNNAC 3 cut(s) 499, 685, 853
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 4 cut(s) 233, 380, 468, 664
Hpy8I GTNNAC 3 cut(s) 499, 685, 853
HpyAV CCTTC 4 cut(s) 36, 530, 650, 739
HpyCH4III ACNGT 3 cut(s) 94, 533, 857
HpyCH4V TGCA 8 cut(s) 80, 296, 347, 404, 554, 611, 622, 893
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 890, 899
HpyF3I CTNAG 2 cut(s) 266, 879
Hsp92I GRCGYC 1 cut(s) 643
Hsp92II CATG 6 cut(s) 130, 167, 175, 457, 626, 801
HspAI GCGC 1 cut(s) 715
Kpn2I TCCGGA 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 3 cut(s) 107, 692, 785
Lsp1109I GCAGC 2 cut(s) 738, 800
LweI GCATC 6 cut(s) 67, 181, 226, 287, 541, 880
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 61, 100
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 5 cut(s) 30, 311, 419, 431, 665
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 163, 878
MluCI AATT 6 cut(s) 228, 243, 492, 540, 555, 696
MlyI GAGTC 1 cut(s) 669
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 6 cut(s) 49, 121, 174, 275, 475, 478
MroI TCCGGA 1 cut(s) 232
MroXI GAANNNNTTC 2 cut(s) 216, 540
MseI TTAA 4 cut(s) 339, 498, 558, 636
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 690, 782
MvaI CCWGG 2 cut(s) 690, 782
MwoI GCNNNNNNNGC 3 cut(s) 640, 890, 899
NdeII GATC 1 cut(s) 436
NlaIII CATG 6 cut(s) 130, 167, 175, 457, 626, 801
NlaIV GGNNCC 1 cut(s) 109
NmeAIII GCCGAG 2 cut(s) 492, 897
NspI RCATGY 2 cut(s) 626, 801
PaeI GCATGC 1 cut(s) 626
PasI CCCWGGG 1 cut(s) 781
PdmI GAANNNNTTC 2 cut(s) 216, 540
PfeI GAWTC 2 cut(s) 566, 814
PflMI CCANNNNNTGG 1 cut(s) 912
PkrI GCNGC 2 cut(s) 753, 790
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PshAI GACNNNNGTC 2 cut(s) 203, 938
PshBI ATTAAT 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 878
Psp6I CCWGG 2 cut(s) 688, 780
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 2 cut(s) 688, 780
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 878
SaqAI TTAA 4 cut(s) 339, 498, 558, 636
SatI GCNGC 2 cut(s) 752, 789
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 669
ScrFI CCNGG 2 cut(s) 690, 782
SduI GDGCHC 2 cut(s) 163, 878
SfaNI GCATC 6 cut(s) 67, 181, 226, 287, 541, 880
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 3 cut(s) 378, 466, 647
SmoI CTYRAG 3 cut(s) 378, 466, 647
SphI GCATGC 1 cut(s) 626
Sse9I AATT 6 cut(s) 228, 243, 492, 540, 555, 696
SspI AATATT 1 cut(s) 331
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 878
StyD4I CCNGG 2 cut(s) 688, 780
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 94, 533, 857
TaqI TCGA 1 cut(s) 663
TasI AATT 6 cut(s) 228, 243, 492, 540, 555, 696
TfiI GAWTC 2 cut(s) 566, 814
Tru1I TTAA 4 cut(s) 339, 498, 558, 636
Tru9I TTAA 4 cut(s) 339, 498, 558, 636
TscAI CASTG 2 cut(s) 183, 816
TseI GCWGC 2 cut(s) 751, 788
TspDTI ATGAA 4 cut(s) 261, 470, 579, 758
TspRI CASTG 2 cut(s) 183, 816
Van91I CCANNNNNTGG 1 cut(s) 912
VspI ATTAAT 1 cut(s) 558
XapI RAATTY 2 cut(s) 228, 540
XceI RCATGY 2 cut(s) 626, 801
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmnI GAANNNNTTC 2 cut(s) 216, 540
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.