Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000238

Physical Location & Seq

Genomic Coordinates Forward (+)

10928693 .. 10932227

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G101600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTGGATATTTGGATGGAAAGGGCAATCTGGATTCTCAGCCCGCTCTACAGCTGAGGAAGTTACTCAAGGAATTGATGGAACTGGTCTCACGGCAATTGTTACAGGGGCATCAAGTGGTCTTGGTCTGGAGACAACACGTGTTCTAGCCTTGCGTCGTGTTCATGTCATCATGGCAGTAAGAAATACAGAGGCTGGTAGGGATGTGAGAACGGCAATACTTAAGGAAATCCCCACTGCCAACATCAATGTTATGGAACTAGATCTCAGCTCAATGGCATCAGTAAGAAAATTTGCATCGGAATATAACTCCTCTGGTCTTCCATTGAATATCCTGATTAATAATGCAGGGGTTATGGCAACTCCTTTCATGCTTTCCCAAGACAACATTGAACTGCAGTTTGCAACCAACCATTTGGGCCATTTTCTTTTGACCAACCTTCTATTGGAGACCATGAAGAAGACAACAAGGGAGAGCAAAAAAGAGGGAAGAATCGTGAACTTATCATCAGAGGCTCACCGATTTGCATATAGTGAGGGGATTCGTTTTGATAAGATTAATGATGAATCAGGATACAGCAGTATATATGCTTATGGACAATCAAAGCTAGCCAACATATTGCATGCTAATGAGCTCACAAAGCGCTTGAAGGAAGAAGGAGTTGCTATAACTGCTAATTCCCTTCATCCTGGATCAATTGCTACCAATCTTCTACGCTACCACAGTTATATTAATGTCATTGCCAGCACGCTCGGTAGATTGATGCTTAAAAATGTCCAGCAGGGAGCAGCAACTGAATGCTACGTGGCATTGCATCCGCAAGTTAAGGGTGTCAGCGGCGAATATTTTATGGACAGCAACAAAGCCAATCCAACCTCTCAGGCTAAAGATCCAGAACTGGCAAAGAAGCTATGGGATTTCAGTTTGAGCCTGACGGATCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

316

Amino Acids

34.51

Weight (kDa)

8.81

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca	FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica	MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica	Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis	pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis	RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata	RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora	Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa	Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha	Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana	Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	3 cut(s)	43, 818, 837
AclWI	GGATC	4 cut(s)	700, 884, 932, 945
AcsI	RAATTY	1 cut(s)	290
AcvI	CACGTG	1 cut(s)	140
AfeI	AGCGCT	1 cut(s)	644
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	137, 139
AgsI	TTSAA	3 cut(s)	328, 392, 649
AjnI	CCWGG	1 cut(s)	688
AluBI	AGCT	5 cut(s)	53, 270, 607, 634, 910
AluI	AGCT	5 cut(s)	53, 270, 607, 634, 910
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	3 cut(s)	92, 125, 443
AlwI	GGATC	4 cut(s)	700, 884, 932, 945
AlwNI	CAGNNNCTG	2 cut(s)	194, 794
Aor51HI	AGCGCT	1 cut(s)	644
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	1 cut(s)	290
AseI	ATTAAT	3 cut(s)	339, 558, 732
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	509
AsuNHI	GCTAGC	1 cut(s)	607
BaeI	ACNNNNGTAYC	2 cut(s)	565, 598
BamHI	GGATCC	1 cut(s)	937
BanII	GRGCYC	1 cut(s)	636
BbrPI	CACGTG	1 cut(s)	140
BbsI	GAAGAC	2 cut(s)	311, 467
Bbv12I	GWGCWC	1 cut(s)	636
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	800
BccI	CCATC	2 cut(s)	9, 71
BceAI	ACGGC	2 cut(s)	108, 228
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	1 cut(s)	566
BcoDI	GTCTC	3 cut(s)	92, 125, 443
BfaI	CTAG	3 cut(s)	146, 260, 608
BfmI	CTRYAG	2 cut(s)	48, 395
BfoI	RGCGCY	1 cut(s)	646
BfrI	CTTAAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	566
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	2 cut(s)	789, 838
BlsI	GCNGC	2 cut(s)	790, 839
Bme1390I	CCNGG	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	939
BmrFI	CCNGG	1 cut(s)	690
BmsI	GCATC	5 cut(s)	119, 287, 305, 753, 823
BmtI	GCTAGC	1 cut(s)	611
BpiI	GAAGAC	2 cut(s)	311, 467
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	51
BsaAI	YACGTR	2 cut(s)	140, 805
BsaI	GGTCTC	2 cut(s)	92, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	2 cut(s)	88, 903
Bse3DI	GCAATG	2 cut(s)	738, 809
BseBI	CCWGG	1 cut(s)	690
BseGI	GGATG	4 cut(s)	20, 208, 685, 814
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	2 cut(s)	738, 809
BseMII	CTCAG	4 cut(s)	45, 51, 280, 893
BseNI	ACTGG	2 cut(s)	88, 903
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	800
BshFI	GGCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	636
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	3 cut(s)	92, 125, 443
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	1 cut(s)	420
Bso31I	GGTCTC	2 cut(s)	92, 443
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	4 cut(s)	262, 692, 889, 937
BspACI	CCGC	3 cut(s)	43, 818, 837
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	4 cut(s)	46, 50, 279, 892
BspLI	GGNNCC	1 cut(s)	939
BspMAI	CTGCAG	1 cut(s)	399
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	4 cut(s)	700, 884, 932, 945
BspTI	CTTAAG	1 cut(s)	221
BspTNI	GGTCTC	2 cut(s)	92, 443
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	738, 809
BsrI	ACTGG	2 cut(s)	88, 903
BssMI	GATC	4 cut(s)	262, 692, 889, 937
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	1 cut(s)	725
BstAFI	CTTAAG	1 cut(s)	221
BstBAI	YACGTR	2 cut(s)	140, 805
BstC8I	GCNNGC	5 cut(s)	43, 609, 624, 745, 749
BstDEI	CTNAG	4 cut(s)	37, 54, 266, 879
BstF5I	GGATG	4 cut(s)	20, 208, 685, 814
BstH2I	RGCGCY	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	4 cut(s)	265, 695, 892, 940
BstMAI	GTCTC	3 cut(s)	92, 125, 443
BstMBI	GATC	4 cut(s)	262, 692, 889, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	640, 671
BstNI	CCWGG	1 cut(s)	690
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	688
BstSFI	CTRYAG	2 cut(s)	48, 395
BstV1I	GCAGC	1 cut(s)	800
BstV2I	GAAGAC	2 cut(s)	311, 467
BstX2I	RGATCY	3 cut(s)	262, 889, 937
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	3 cut(s)	262, 889, 937
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	4 cut(s)	20, 208, 685, 814
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	5 cut(s)	43, 609, 624, 745, 749
CaiI	CAGNNNCTG	2 cut(s)	194, 794
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	418
CseI	GACGC	1 cut(s)	143
CviAII	CATG	5 cut(s)	164, 172, 370, 454, 623
DdeI	CTNAG	4 cut(s)	37, 54, 266, 879
DpnI	GATC	4 cut(s)	264, 694, 891, 939
DpnII	GATC	4 cut(s)	262, 692, 889, 937
Ecl136II	GAGCTC	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	636
Eco31I	GGTCTC	2 cut(s)	92, 443
Eco47III	AGCGCT	1 cut(s)	644
Eco53kI	GAGCTC	1 cut(s)	634
Eco72I	CACGTG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	5 cut(s)	167, 175, 373, 457, 626
FatI	CATG	5 cut(s)	163, 171, 369, 453, 622
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	789, 838
FokI	GGATG	4 cut(s)	27, 215, 672, 801
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	2 cut(s)	789, 838
FspBI	CTAG	3 cut(s)	146, 260, 608
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	2 cut(s)	789, 838
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	646
HaeIII	GGCC	1 cut(s)	420
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	5 cut(s)	167, 175, 373, 457, 626
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	4 cut(s)	33, 492, 541, 566
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	2 cut(s)	301, 511
Hpy188III	TCNNGA	6 cut(s)	30, 128, 334, 496, 570, 893
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	4 cut(s)	449, 643, 650, 692
HpyCH4III	ACNGT	1 cut(s)	725
HpyCH4IV	ACGT	2 cut(s)	139, 804
HpyCH4V	TGCA	7 cut(s)	296, 347, 397, 404, 527, 622, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	640, 671
HpyF3I	CTNAG	4 cut(s)	37, 54, 266, 879
HpySE526I	ACGT	2 cut(s)	139, 804
Hsp92II	CATG	5 cut(s)	167, 175, 373, 457, 626
HspAI	GCGC	1 cut(s)	643
Kzo9I	GATC	4 cut(s)	262, 692, 889, 937
LmnI	GCTCC	1 cut(s)	785
Lsp1109I	GCAGC	1 cut(s)	800
LweI	GCATC	5 cut(s)	119, 287, 305, 753, 823
MaeI	CTAG	3 cut(s)	146, 260, 608
MaeII	ACGT	2 cut(s)	139, 804
MaeIII	GTNAC	2 cut(s)	61, 100
MalI	GATC	4 cut(s)	264, 694, 891, 939
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	4 cut(s)	262, 692, 889, 937
MboII	GAAGA	6 cut(s)	311, 469, 472, 501, 665, 701
MfeI	CAATTG	2 cut(s)	96, 696
MflI	RGATCY	3 cut(s)	262, 889, 937
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	5 cut(s)	72, 96, 290, 676, 696
MmeI	TCCRAC	1 cut(s)	896
MnlI	CCTC	7 cut(s)	49, 184, 322, 478, 505, 529, 886
MseI	TTAA	6 cut(s)	222, 339, 558, 732, 768, 825
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	2 cut(s)	53, 837
MspCI	CTTAAG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	690
MunI	CAATTG	2 cut(s)	96, 696
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	640, 671
NdeII	GATC	4 cut(s)	262, 692, 889, 937
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	5 cut(s)	167, 175, 373, 457, 626
NlaIV	GGNNCC	1 cut(s)	939
NspI	RCATGY	1 cut(s)	626
PaeI	GCATGC	1 cut(s)	626
PctI	GAATGC	1 cut(s)	803
PfeI	GAWTC	4 cut(s)	33, 492, 541, 566
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	790, 839
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
Ppu21I	YACGTR	2 cut(s)	140, 805
PshBI	ATTAAT	3 cut(s)	339, 558, 732
Psp124BI	GAGCTC	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	688
PspCI	CACGTG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	1 cut(s)	939
PspPI	GGNCC	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	399
PstNI	CAGNNNCTG	2 cut(s)	194, 794
PsuI	RGATCY	3 cut(s)	262, 889, 937
PvuII	CAGCTG	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	6 cut(s)	222, 339, 558, 732, 768, 825
SatI	GCNGC	2 cut(s)	789, 838
Sau3AI	GATC	4 cut(s)	262, 692, 889, 937
Sau96I	GGNCC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	690
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	9 cut(s)	55, 142, 272, 441, 609, 636, 807, 878, 912
SfaNI	GCATC	5 cut(s)	119, 287, 305, 753, 823
SfcI	CTRYAG	2 cut(s)	48, 395
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	66, 221
SmoI	CTYRAG	2 cut(s)	66, 221
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	5 cut(s)	72, 96, 290, 676, 696
SsiI	CCGC	3 cut(s)	43, 818, 837
SspI	AATATT	1 cut(s)	845
SspMI	CTAG	3 cut(s)	146, 260, 608
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	1 cut(s)	688
TaaI	ACNGT	1 cut(s)	725
TaiI	ACGT	2 cut(s)	142, 807
TasI	AATT	5 cut(s)	72, 96, 290, 676, 696
TauI	GCSGC	1 cut(s)	840
TfiI	GAWTC	4 cut(s)	33, 492, 541, 566
Tru1I	TTAA	6 cut(s)	222, 339, 558, 732, 768, 825
Tru9I	TTAA	6 cut(s)	222, 339, 558, 732, 768, 825
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	788
TspDTI	ATGAA	5 cut(s)	152, 358, 470, 579, 674
TspRI	CASTG	1 cut(s)	241
Vha464I	CTTAAG	1 cut(s)	221
VspI	ATTAAT	3 cut(s)	339, 558, 732
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XspI	CTAG	3 cut(s)	146, 260, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.