pycom06g08200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000238
Physical Location & Seq
Forward (+)
13336898 .. 13337329
432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08200.2

Sequence Viewer

Length: 345 bp
ATGGGTGGGATATTTAGCAAGAAAGGACCATCTGGGTTCTCATCCTGGTCGACAGCCGAGGAAGTTACCGAAGGGATTGATGGATCTGGTGTAACTGCCATTGTTACAGGAGGCTCAAGTGGTATTGGGGCGGAGACATCACGTGTTCTTGCACTGCGTGGTGTCCATGTATTTATGGCCGTAAGGAACACGGAAGCTGGGGAACGCGTTAAAGAAGCGATACTTACAGAAGTACCCGACGCAAAAGTTGACGTTAGGGAGTTGGATCTCAGTTCATTGGAATCTGTAAGGAAATTTGGAGCAAATTATTGTTCCTCCGGCCTTCCATTGAACTTCCTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

115

Amino Acids

11.86

Weight (kDa)

5.11

Isoelectric Point (pI)

26.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 207
AciI CCGC 1 cut(s) 131
AclWI GGATC 2 cut(s) 91, 273
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 293
AcvI CACGTG 1 cut(s) 143
AdeI CACNNNGTG 1 cut(s) 158
AfaI GTAC 1 cut(s) 234
AflIII ACRYGT 2 cut(s) 142, 205
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 2 cut(s) 91, 273
AoxI GGCC 2 cut(s) 177, 319
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 26
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BbrPI CACGTG 1 cut(s) 143
BccI CCATC 2 cut(s) 37, 74
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 179, 321
BsiSI CCGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 2 cut(s) 179, 321
Bsp143I GATC 2 cut(s) 83, 265
BspACI CCGC 1 cut(s) 131
BspANI GGCC 2 cut(s) 179, 321
BspCNI CTCAG 1 cut(s) 282
BspFNI CGCG 1 cut(s) 207
BspPI GGATC 2 cut(s) 91, 273
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 2 cut(s) 83, 265
Bst2UI CCWGG 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 2 cut(s) 86, 268
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 2 cut(s) 83, 265
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstUI CGCG 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 83, 265
BstYI RGATCY 2 cut(s) 83, 265
BsuRI GGCC 2 cut(s) 179, 321
BtsCI GGATG 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 233
CviAII CATG 1 cut(s) 167
CviJI RGCY 5 cut(s) 56, 114, 179, 197, 321
CviKI_1 RGCY 5 cut(s) 56, 114, 179, 197, 321
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 269
DpnI GATC 2 cut(s) 85, 267
DpnII GATC 2 cut(s) 83, 265
DraIII CACNNNGTG 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 177
EciI GGCGGA 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 26
Eco72I CACGTG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 170
FaiI YATR 2 cut(s) 168, 176
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 1 cut(s) 166
FblI GTMKAC 1 cut(s) 50
FokI GGATG 1 cut(s) 28
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 179, 321
HapII CCGG 1 cut(s) 318
HgaI GACGC 1 cut(s) 248
Hin1II CATG 1 cut(s) 170
HincII GTYRAC 2 cut(s) 51, 250
HindII GTYRAC 2 cut(s) 51, 250
HinfI GANTC 1 cut(s) 281
HpaII CCGG 1 cut(s) 318
Hpy166II GTNNAC 2 cut(s) 51, 250
Hpy8I GTNNAC 2 cut(s) 51, 250
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 65, 332
HpyCH4IV ACGT 2 cut(s) 142, 252
HpyCH4V TGCA 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 2 cut(s) 142, 252
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 2 cut(s) 83, 265
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 7 cut(s) 18, 31, 58, 72, 93, 183, 331
MaeII ACGT 2 cut(s) 142, 252
MaeIII GTNAC 3 cut(s) 64, 91, 103
MalI GATC 2 cut(s) 85, 267
MboI GATC 2 cut(s) 83, 265
MflI RGATCY 2 cut(s) 83, 265
MluCI AATT 2 cut(s) 293, 304
MluI ACGCGT 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 52, 104, 325
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
MvnI CGCG 1 cut(s) 207
NdeII GATC 2 cut(s) 83, 265
NlaIII CATG 1 cut(s) 170
NmeAIII GCCGAG 1 cut(s) 82
PfeI GAWTC 1 cut(s) 281
PmaCI CACGTG 1 cut(s) 143
PmlI CACGTG 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 44
PspCI CACGTG 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 44
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 2 cut(s) 83, 265
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 2 cut(s) 83, 265
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 46
SetI ASST 3 cut(s) 145, 199, 255
SinI GGWCC 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 2 cut(s) 293, 304
SsiI CCGC 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 44
TaiI ACGT 2 cut(s) 145, 255
TaqI TCGA 1 cut(s) 50
TasI AATT 2 cut(s) 293, 304
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 159
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.