Rw7G013970
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001582
Physical Location & Seq
Forward (+)
13446037 .. 13447617
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G013970.1

Sequence Viewer

Length: 552 bp
ATGATCATTTCGGAGAAGAACCGCCGCGAGATCTCCAAGTACCTCTTCCAAGAGGGAGTGTGCTATGCGAAGAAGGACTACAACATGCCGAAGCATCCAGAGATCGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCCTCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCCGTCCTTTCGGCGGCCCACCAGGCGACCGCCCTCGTGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCGGGGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGGGTGCTCCAACAAGACCTGCCTTCGGTCGTGGAGCTGGTGGTTTTGGTTCTGGCTCAGCTAGCTCTAATCTTTCTTAA

Protein Analysis

183

Amino Acids

20.16

Weight (kDa)

9.68

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S10_plectin PF03501 3 - 94 1.7e-43 Plectin/S10 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 3 cut(s) 112, 252, 499
Acc65I GGTACC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 198
AccII CGCG 1 cut(s) 27
AciI CCGC 6 cut(s) 22, 25, 291, 309, 325, 429
AcoI YGGCCR 1 cut(s) 295
AfaI GTAC 2 cut(s) 41, 200
AfiI CCNNNNNNNGG 7 cut(s) 180, 250, 308, 347, 407, 470, 497
AgsI TTSAA 1 cut(s) 148
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 3 cut(s) 179, 316, 412
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 5 cut(s) 133, 144, 509, 533, 537
AluI AGCT 5 cut(s) 133, 144, 509, 533, 537
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 3 cut(s) 295, 310, 334
Asp718I GGTACC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 4 cut(s) 311, 335, 398, 410
AsuHPI GGTGA 5 cut(s) 136, 196, 362, 386, 431
AsuNHI GCTAGC 1 cut(s) 533
AvaII GGWCC 2 cut(s) 398, 410
BaeGI GKGCMC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 448
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
BauI CACGAG 2 cut(s) 330, 402
Bbv12I GWGCWC 1 cut(s) 481
BccI CCATC 3 cut(s) 206, 347, 377
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 3 cut(s) 181, 318, 414
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 2 cut(s) 119, 457
BfuAI ACCTGC 3 cut(s) 112, 252, 499
BglI GCCNNNNNGGC 2 cut(s) 318, 333
BglII AGATCT 1 cut(s) 30
BisI GCNGC 2 cut(s) 25, 310
BlpI GCTNAGC 2 cut(s) 285, 529
BlsI GCNGC 2 cut(s) 26, 311
Bme1390I CCNGG 3 cut(s) 181, 318, 414
Bme18I GGWCC 2 cut(s) 398, 410
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 4 cut(s) 311, 335, 398, 410
BmiI GGNNCC 2 cut(s) 200, 445
BmrFI CCNGG 3 cut(s) 181, 318, 414
BmsI GCATC 3 cut(s) 103, 126, 174
BmtI GCTAGC 1 cut(s) 537
Bpu1102I GCTNAGC 2 cut(s) 285, 529
BpuEI CTTGAG 2 cut(s) 247, 257
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 153, 249, 391
Bsc4I CCNNNNNNNGG 7 cut(s) 180, 250, 308, 347, 407, 470, 497
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 3 cut(s) 181, 318, 414
BseDI CCNNGG 3 cut(s) 153, 249, 391
BseGI GGATG 2 cut(s) 94, 189
BseLI CCNNNNNNNGG 7 cut(s) 180, 250, 308, 347, 407, 470, 497
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 264
BseX3I CGGCCG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 27
Bsh1285I CGRYCG 3 cut(s) 298, 325, 502
BshFI GGCC 3 cut(s) 297, 312, 336
BshNI GGYRCC 1 cut(s) 198
BsiEI CGRYCG 3 cut(s) 298, 325, 502
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 7 cut(s) 180, 250, 308, 347, 407, 470, 497
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 3 cut(s) 297, 312, 336
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 264, 448, 481
Bsp143I GATC 3 cut(s) 3, 30, 102
Bsp1720I GCTNAGC 2 cut(s) 285, 529
BspACI CCGC 6 cut(s) 22, 25, 291, 309, 325, 429
BspANI GGCC 3 cut(s) 297, 312, 336
BspCNI CTCAG 1 cut(s) 542
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 200, 445
BspMAI CTGCAG 1 cut(s) 123
BspMI ACCTGC 3 cut(s) 112, 252, 499
BspOI GCTAGC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 153, 249, 391
BssMI GATC 3 cut(s) 3, 30, 102
BssSI CACGAG 2 cut(s) 330, 402
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 2 cut(s) 330, 402
Bst2UI CCWGG 3 cut(s) 181, 318, 414
Bst4CI ACNGT 2 cut(s) 380, 392
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 4 cut(s) 282, 291, 295, 535
BstDEI CTNAG 2 cut(s) 285, 529
BstDSI CCRYGG 1 cut(s) 391
BstEII GGTNACC 2 cut(s) 374, 386
BstF5I GGATG 2 cut(s) 94, 189
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 3 cut(s) 6, 33, 105
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 3, 30, 102
BstMCI CGRYCG 3 cut(s) 298, 325, 502
BstMWI GCNNNNNNNGC 7 cut(s) 118, 286, 290, 318, 333, 342, 534
BstNI CCWGG 3 cut(s) 181, 318, 414
BstNSI RCATGY 1 cut(s) 88
BstPI GGTNACC 2 cut(s) 374, 386
BstSCI CCNGG 3 cut(s) 179, 316, 412
BstSFI CTRYAG 2 cut(s) 119, 457
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BstZI CGGCCG 1 cut(s) 295
BsuRI GGCC 3 cut(s) 297, 312, 336
BtgI CCRYGG 1 cut(s) 391
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 2 cut(s) 94, 189
BveI ACCTGC 3 cut(s) 112, 252, 499
Cac8I GCNNGC 4 cut(s) 282, 291, 295, 535
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 311, 335, 398, 410
Csp6I GTAC 2 cut(s) 40, 199
CviAII CATG 1 cut(s) 85
CviQI GTAC 2 cut(s) 40, 199
DdeI CTNAG 2 cut(s) 285, 529
DpnI GATC 3 cut(s) 5, 32, 104
DpnII GATC 3 cut(s) 3, 30, 102
EaeI YGGCCR 1 cut(s) 295
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 398, 410
Eco52I CGGCCG 1 cut(s) 295
Eco91I GGTNACC 2 cut(s) 374, 386
EcoO109I RGGNCCY 1 cut(s) 398
EcoO65I GGTNACC 2 cut(s) 374, 386
EcoRII CCWGG 3 cut(s) 179, 316, 412
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 88
FaiI YATR 3 cut(s) 66, 86, 162
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 446
FatI CATG 1 cut(s) 84
FauI CCCGC 2 cut(s) 298, 422
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 25, 310
FokI GGATG 2 cut(s) 81, 196
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 25, 310
FspBI CTAG 1 cut(s) 534
GlaI GCGC 1 cut(s) 362
GluI GCNGC 2 cut(s) 25, 310
HaeIII GGCC 3 cut(s) 297, 312, 336
HapII CCGG 1 cut(s) 294
HhaI GCGC 1 cut(s) 363
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 294
HphI GGTGA 5 cut(s) 136, 196, 362, 386, 431
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 2 cut(s) 13, 253
Hpy188III TCNNGA 3 cut(s) 98, 226, 274
Hpy8I GTNNAC 1 cut(s) 410
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 4 cut(s) 67, 184, 474, 505
HpyCH4III ACNGT 2 cut(s) 380, 392
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 121, 139, 187
HpyF10VI GCNNNNNNNGC 7 cut(s) 118, 286, 290, 318, 333, 342, 534
HpyF3I CTNAG 2 cut(s) 285, 529
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 361
KpnI GGTACC 1 cut(s) 202
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 30, 102
LmnI GCTCC 3 cut(s) 443, 484, 506
LweI GCATC 3 cut(s) 103, 126, 174
MaeI CTAG 1 cut(s) 534
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 3 cut(s) 374, 386, 419
MalI GATC 3 cut(s) 5, 32, 104
MboI GATC 3 cut(s) 3, 30, 102
MboII GAAGA 3 cut(s) 28, 37, 82
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 3 cut(s) 264, 448, 481
MmeI TCCRAC 1 cut(s) 506
MroNI GCCGGC 1 cut(s) 293
MseI TTAA 2 cut(s) 129, 550
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 3 cut(s) 181, 318, 414
MvaI CCWGG 3 cut(s) 181, 318, 414
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 7 cut(s) 118, 286, 290, 318, 333, 342, 534
NaeI GCCGGC 1 cut(s) 295
NdeII GATC 3 cut(s) 3, 30, 102
NgoMIV GCCGGC 1 cut(s) 293
NheI GCTAGC 1 cut(s) 533
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 200, 445
NmuCI GTSAC 2 cut(s) 374, 419
NspI RCATGY 1 cut(s) 88
PaqCI CACCTGC 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 26, 311
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 3 cut(s) 179, 316, 412
PspEI GGTNACC 2 cut(s) 374, 386
PspGI CCWGG 3 cut(s) 179, 316, 412
PspN4I GGNNCC 2 cut(s) 200, 445
PspPI GGNCC 4 cut(s) 311, 335, 398, 410
PspPPI RGGWCCY 1 cut(s) 398
PstI CTGCAG 1 cut(s) 123
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 2 cut(s) 41, 200
RsaNI GTAC 2 cut(s) 40, 199
SaqAI TTAA 2 cut(s) 129, 550
SatI GCNGC 2 cut(s) 25, 310
Sau3AI GATC 3 cut(s) 3, 30, 102
Sau96I GGNCC 4 cut(s) 311, 335, 398, 410
ScrFI CCNGG 3 cut(s) 181, 318, 414
SduI GDGCHC 3 cut(s) 264, 448, 481
SfaNI GCATC 3 cut(s) 103, 126, 174
SfcI CTRYAG 2 cut(s) 119, 457
SinI GGWCC 2 cut(s) 398, 410
SmlI CTYRAG 2 cut(s) 226, 272
SmoI CTYRAG 2 cut(s) 226, 272
SsiI CCGC 6 cut(s) 22, 25, 291, 309, 325, 429
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 179, 316, 412
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 380, 392
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 105
TaqII GACCGA 1 cut(s) 488
TauI GCSGC 2 cut(s) 27, 312
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 129, 550
Tru9I TTAA 2 cut(s) 129, 550
TseFI GTSAC 2 cut(s) 374, 419
Tsp45I GTSAC 2 cut(s) 374, 419
VpaK11BI GGWCC 2 cut(s) 398, 410
XceI RCATGY 1 cut(s) 88
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.