Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

39329948 .. 39332109

Gene Structure 2162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1171100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATCATTTCGGAGAAGAATCGCCGGGAGATCTCGAAGTATCTGTTCCAAGAGGGAGTTTGCTACGCGAAGAAGGACTATAACTTGGCGAAGCACCCGGATATCGATGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACGTTTGCTTGGATGCACTACTACTGGTACCTCACCAATGACGGTATCGAGTTTTTGAGGACTTACCTCAATCTCCCTTCGGAGATTGTTCCTGCTACTCTGAAGAAGCAGGCCAAGCCTCCTGGCCGCCCCATGGGCCCGTCCGGTGACCGCCCCCGTGGCCCATCTCGCTTTGATGGAGAACGCAGATTCGGTGGTGACAGGGATGGGTACCGTGGAGGACCTCGTGCCCCTGGGGGTGACTTTGGGGACAAGGGTGGAGCTCCTGCTGATTATAGACCTTCTTTTGGGGGGCCCGGTGGAAGACCTGGCTTTGGTCGCGGAGCTGGTGGTTTTGGTGCAGGCCCCGCTAGCTCTAATCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

180

Amino Acids

19.76

Weight (kDa)

9.68

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	3 - 94	1.6e-42	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
Acc65I	GGTACC	2 cut(s)	198, 381
AccB1I	GGYRCC	2 cut(s)	198, 381
AccII	CGCG	2 cut(s)	68, 492
AciI	CCGC	4 cut(s)	298, 322, 492, 519
AcoI	YGGCCR	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	2 cut(s)	200, 383
AfiI	CCNNNNNNNGG	3 cut(s)	304, 458, 485
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	3 cut(s)	292, 403, 478
AluBI	AGCT	5 cut(s)	133, 144, 434, 497, 525
AluI	AGCT	5 cut(s)	133, 144, 434, 497, 525
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	164
AoxI	GGCC	6 cut(s)	282, 295, 307, 331, 464, 514
ApaI	GGGCCC	2 cut(s)	311, 468
Asp718I	GGTACC	2 cut(s)	198, 381
AspS9I	GGNCC	7 cut(s)	307, 308, 332, 392, 464, 465, 515
AsuC2I	CCSGG	3 cut(s)	26, 98, 468
AsuHPI	GGTGA	5 cut(s)	136, 196, 329, 380, 422
AsuNHI	GCTAGC	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	3 cut(s)	311, 403, 468
BanI	GGYRCC	2 cut(s)	198, 381
BanII	GRGCYC	3 cut(s)	311, 436, 468
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	481
Bbv12I	GWGCWC	1 cut(s)	436
BccI	CCATC	3 cut(s)	341, 343, 371
BciT130I	CCWGG	3 cut(s)	294, 405, 480
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	3 cut(s)	26, 98, 468
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	112
BglI	GCCNNNNNGGC	2 cut(s)	306, 330
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	298
BlsI	GCNGC	1 cut(s)	299
Bme1390I	CCNGG	6 cut(s)	26, 98, 294, 405, 468, 480
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	7 cut(s)	307, 308, 332, 392, 464, 465, 515
BmiI	GGNNCC	6 cut(s)	200, 309, 383, 465, 466, 517
BmrFI	CCNGG	6 cut(s)	26, 98, 294, 405, 468, 480
BmsI	GCATC	2 cut(s)	126, 174
BmtI	GCTAGC	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	481
BpuMI	CCSGG	3 cut(s)	26, 98, 468
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	6 cut(s)	153, 303, 328, 385, 403, 404
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 458, 485
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	3 cut(s)	294, 405, 480
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	6 cut(s)	153, 303, 328, 385, 403, 404
BseGI	GGATG	2 cut(s)	189, 382
BseLI	CCNNNNNNNGG	3 cut(s)	304, 458, 485
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	3 cut(s)	311, 403, 468
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	2 cut(s)	68, 492
BshFI	GGCC	6 cut(s)	284, 297, 309, 333, 466, 516
BshNI	GGYRCC	2 cut(s)	198, 381
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	4 cut(s)	25, 98, 315, 468
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	304, 458, 485
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	6 cut(s)	284, 297, 309, 333, 466, 516
Bsp120I	GGGCCC	2 cut(s)	307, 464
Bsp1286I	GDGCHC	4 cut(s)	311, 403, 436, 468
Bsp143I	GATC	2 cut(s)	3, 30
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	4 cut(s)	298, 322, 492, 519
BspANI	GGCC	6 cut(s)	284, 297, 309, 333, 466, 516
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	68, 492
BspLI	GGNNCC	6 cut(s)	200, 309, 383, 465, 466, 517
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	112
BspOI	GCTAGC	1 cut(s)	525
BspT107I	GGYRCC	2 cut(s)	198, 381
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	6 cut(s)	153, 303, 328, 385, 403, 404
BssMI	GATC	2 cut(s)	3, 30
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	153, 303
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	3 cut(s)	294, 405, 480
Bst4CI	ACNGT	2 cut(s)	215, 386
BstC8I	GCNNGC	3 cut(s)	282, 514, 523
BstDSI	CCRYGG	3 cut(s)	303, 328, 385
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	189, 382
BstFNI	CGCG	2 cut(s)	68, 492
BstKTI	GATC	2 cut(s)	6, 33
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	3, 30
BstMWI	GCNNNNNNNGC	8 cut(s)	118, 286, 306, 330, 339, 489, 518, 522
BstNI	CCWGG	3 cut(s)	294, 405, 480
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	6 cut(s)	24, 96, 292, 403, 466, 478
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	3 cut(s)	311, 403, 468
BstUI	CGCG	2 cut(s)	68, 492
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	6 cut(s)	284, 297, 309, 333, 466, 516
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	3 cut(s)	303, 328, 385
BtsCI	GGATG	2 cut(s)	189, 382
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	3 cut(s)	282, 514, 523
Cfr13I	GGNCC	7 cut(s)	307, 308, 332, 392, 464, 465, 515
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	199, 382
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	2 cut(s)	199, 382
DpnI	GATC	2 cut(s)	5, 32
DpnII	GATC	2 cut(s)	3, 30
EaeI	YGGCCR	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	434
Eco130I	CCWWGG	2 cut(s)	153, 303
Eco24I	GRGCYC	3 cut(s)	311, 436, 468
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	3 cut(s)	392, 464, 515
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	292, 403, 478
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	153, 303
EcoT38I	GRGCYC	3 cut(s)	311, 436, 468
ErhI	CCWWGG	2 cut(s)	153, 303
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	81, 162, 305, 447
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	298
FokI	GGATG	2 cut(s)	196, 389
FriOI	GRGCYC	3 cut(s)	311, 436, 468
Fsp4HI	GCNGC	1 cut(s)	298
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	1 cut(s)	298
HaeIII	GGCC	6 cut(s)	284, 297, 309, 333, 466, 516
HapII	CCGG	4 cut(s)	25, 98, 315, 468
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	3 cut(s)	19, 115, 360
HpaII	CCGG	4 cut(s)	25, 98, 315, 468
HphI	GGTGA	5 cut(s)	136, 196, 329, 380, 422
Hpy188I	TCNGA	3 cut(s)	13, 253, 273
Hpy188III	TCNNGA	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	67, 258, 462
HpyCH4III	ACNGT	2 cut(s)	215, 386
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	121, 139, 187, 512
HpyF10VI	GCNNNNNNNGC	8 cut(s)	118, 286, 306, 330, 339, 489, 518, 522
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	307
KpnI	GGTACC	2 cut(s)	202, 385
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 30
LmnI	GCTCC	3 cut(s)	431, 439, 494
LweI	GCATC	2 cut(s)	126, 174
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	3 cut(s)	317, 368, 410
MalI	GATC	2 cut(s)	5, 32
MboI	GATC	2 cut(s)	3, 30
MboII	GAAGA	4 cut(s)	28, 82, 286, 486
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	4 cut(s)	311, 403, 436, 468
MnlI	CCTC	8 cut(s)	46, 159, 212, 222, 248, 300, 383, 405
MseI	TTAA	2 cut(s)	129, 538
MspI	CCGG	4 cut(s)	25, 98, 315, 468
MspR9I	CCNGG	6 cut(s)	26, 98, 294, 405, 468, 480
MvaI	CCWGG	3 cut(s)	294, 405, 480
MvnI	CGCG	2 cut(s)	68, 492
MwoI	GCNNNNNNNGC	8 cut(s)	118, 286, 306, 330, 339, 489, 518, 522
NciI	CCSGG	3 cut(s)	26, 98, 468
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	3, 30
NheI	GCTAGC	1 cut(s)	521
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	6 cut(s)	200, 309, 383, 465, 466, 517
NmuCI	GTSAC	3 cut(s)	317, 368, 410
PaqCI	CACCTGC	1 cut(s)	112
PasI	CCCWGGG	1 cut(s)	404
PfeI	GAWTC	3 cut(s)	19, 115, 360
PkrI	GCNGC	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	3 cut(s)	292, 403, 478
PspEI	GGTNACC	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	292, 403, 478
PspN4I	GGNNCC	6 cut(s)	200, 309, 383, 465, 466, 517
PspOMI	GGGCCC	2 cut(s)	307, 464
PspPI	GGNCC	7 cut(s)	307, 308, 332, 392, 464, 465, 515
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	2 cut(s)	200, 383
RsaNI	GTAC	2 cut(s)	199, 382
SacI	GAGCTC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	129, 538
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	2 cut(s)	3, 30
Sau96I	GGNCC	7 cut(s)	307, 308, 332, 392, 464, 465, 515
ScrFI	CCNGG	6 cut(s)	26, 98, 294, 405, 468, 480
SduI	GDGCHC	4 cut(s)	311, 403, 436, 468
SfaNI	GCATC	2 cut(s)	126, 174
SfcI	CTRYAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	392
SsiI	CCGC	4 cut(s)	298, 322, 492, 519
SspMI	CTAG	1 cut(s)	522
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	6 cut(s)	24, 96, 292, 403, 466, 478
StyI	CCWWGG	2 cut(s)	153, 303
TaaI	ACNGT	2 cut(s)	215, 386
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	35, 105, 219
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	19, 115, 360
Tru1I	TTAA	2 cut(s)	129, 538
Tru9I	TTAA	2 cut(s)	129, 538
TseFI	GTSAC	3 cut(s)	317, 368, 410
Tsp45I	GTSAC	3 cut(s)	317, 368, 410
VpaK11BI	GGWCC	1 cut(s)	392
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.