Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

43703791 .. 43704677

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G534800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCAAGAGAAACTTCGACCTTTTTCATTTGCCATCATCTCTTCCTCTAGTCGTCAGCTCAACTTCGCAACCATGATCATCCTAGAGAAGAACATGAGAGAAATCTCCAACACATGTTCCAAGGGAGTGTGCCATGCGAAGGACTATAACTTGGCAAAGCACCTAGAAATCGATGTGCCAAATCTGCAATGTTTAATTGTGCAAGATGGTTTGAAAACAATAAATCAATCTGTAGCCAACATTAGAAGTTTAGTAACCATCTTTCATACATCACCGACCAAGTACCAAGTTTTTCTAACATGTTGTCAAAATATAGGGTTAAAACTCATAAATGTTCCATTAAATGTGAAAACTAGATGGAATTCAACTTATAAGATGTTGGAAGTGGCTACAAAATATAAAGCAGCTTTAGGATTATTTCAAACAAAAATCAAACATCAACCATTTTTAATAGATGAAGATTGGGATATTGCATCACTTTGGAGAGAACATTTAGTTCAATTTTATGGATCCACTGAAATAATTTATGGCTCTCACTATCCAACTATTCTTTTAGTACTAAAAGAAATAACTAAAATAAAAGACATTTGTCTTGAAATTGAAAACAATGATCTTTTCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

208

Amino Acids

23.85

Weight (kDa)

8.68

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AclWI	GGATC	2 cut(s)	504, 517
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	2 cut(s)	284, 558
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	2 cut(s)	113, 299
AgsI	TTSAA	6 cut(s)	214, 366, 422, 500, 596, 602
AluBI	AGCT	2 cut(s)	58, 407
AluI	AGCT	2 cut(s)	58, 407
AlwI	GGATC	2 cut(s)	504, 517
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	4 cut(s)	41, 200, 266, 351
BclI	TGATCA	1 cut(s)	75
BfaI	CTAG	4 cut(s)	48, 83, 164, 354
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
BmcAI	AGTACT	1 cut(s)	558
BmiI	GGNNCC	1 cut(s)	511
BmsI	GCATC	1 cut(s)	482
BoxI	GACNNNNGTC	1 cut(s)	588
Bsa29I	ATCGAT	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	75, 509, 610
BspDI	ATCGAT	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	2 cut(s)	504, 517
BsrDI	GCAATG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	3 cut(s)	75, 509, 610
BssT1I	CCWWGG	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	3 cut(s)	78, 512, 613
BstMBI	GATC	3 cut(s)	75, 509, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNSI	RCATGY	2 cut(s)	117, 303
BstPAI	GACNNNNGTC	1 cut(s)	588
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
Bsu15I	ATCGAT	1 cut(s)	171
BsuTUI	ATCGAT	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	513
ClaI	ATCGAT	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	283, 557
CviAII	CATG	5 cut(s)	73, 94, 114, 134, 300
CviJI	RGCY	5 cut(s)	58, 236, 389, 407, 531
CviKI_1	RGCY	5 cut(s)	58, 236, 389, 407, 531
CviQI	GTAC	2 cut(s)	283, 557
DpnI	GATC	3 cut(s)	77, 511, 612
DpnII	GATC	3 cut(s)	75, 509, 610
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	5 cut(s)	76, 97, 117, 137, 303
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	5 cut(s)	72, 93, 113, 133, 299
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	4 cut(s)	48, 83, 164, 354
GluI	GCNGC	1 cut(s)	405
Hin1II	CATG	5 cut(s)	76, 97, 117, 137, 303
HphI	GGTGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	593
HpyAV	CCTTC	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	4, 187, 202, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
Hsp92II	CATG	5 cut(s)	76, 97, 117, 137, 303
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	75, 509, 610
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	482
MaeI	CTAG	4 cut(s)	48, 83, 164, 354
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	77, 511, 612
MboI	GATC	3 cut(s)	75, 509, 610
MboII	GAAGA	3 cut(s)	33, 100, 470
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	5 cut(s)	195, 361, 500, 522, 597
MmeI	TCCRAC	3 cut(s)	132, 360, 566
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	4 cut(s)	194, 320, 341, 449
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	3 cut(s)	75, 509, 610
NlaIII	CATG	5 cut(s)	76, 97, 117, 137, 303
NlaIV	GGNNCC	1 cut(s)	511
NspI	RCATGY	2 cut(s)	117, 303
PciI	ACATGT	2 cut(s)	113, 299
PkrI	GCNGC	1 cut(s)	406
PscI	ACATGT	2 cut(s)	113, 299
PshAI	GACNNNNGTC	1 cut(s)	588
PsiI	TTATAA	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	2 cut(s)	284, 558
RsaNI	GTAC	2 cut(s)	283, 557
SaqAI	TTAA	4 cut(s)	194, 320, 341, 449
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	3 cut(s)	75, 509, 610
ScaI	AGTACT	1 cut(s)	558
SetI	ASST	4 cut(s)	22, 60, 165, 409
SfaNI	GCATC	1 cut(s)	482
SfcI	CTRYAG	1 cut(s)	231
Sse9I	AATT	5 cut(s)	195, 361, 500, 522, 597
SspMI	CTAG	4 cut(s)	48, 83, 164, 354
StyI	CCWWGG	1 cut(s)	120
TaqI	TCGA	2 cut(s)	16, 171
TasI	AATT	5 cut(s)	195, 361, 500, 522, 597
TatI	WGTACW	1 cut(s)	556
Tru1I	TTAA	4 cut(s)	194, 320, 341, 449
Tru9I	TTAA	4 cut(s)	194, 320, 341, 449
TscAI	CASTG	1 cut(s)	520
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	15, 254, 471
TspRI	CASTG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	117, 303
XspI	CTAG	4 cut(s)	48, 83, 164, 354
ZrmI	AGTACT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.