Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

21118802 .. 21120260

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAATGTCGTAAGTGAGTCCGTACGTCAAGCTTGTTATGGAACAGAGGGAGTTTGCTATGCAAAGAAGGACGATAACTTGGCAAAGCACCCAGAAATCAATGTGCCAAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAATCCAAGGAGTATTTGAGAGAAACTTTCGCTTGGATGCACTACTACTGGTACCTGACCAATGATGGTATTGAGTTTTTGAGGAACTACCTCAACCTTCCATCTGAGATTGTCCCTGCAACTTTGAAGAAGCAGGGCAAGCCTCCTGGTTGCCCCTTGGGCCCATCTGTTGACTGCCCACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

109

Amino Acids

12.38

Weight (kDa)

8.34

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	106
Acc36I	ACCTGC	1 cut(s)	106
Acc65I	GGTACC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	24, 194
AgsI	TTSAA	2 cut(s)	142, 268
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	3 cut(s)	32, 127, 138
AluI	AGCT	3 cut(s)	32, 127, 138
AoxI	GGCC	1 cut(s)	301
ApaI	GGGCCC	1 cut(s)	305
Asp718I	GGTACC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	301, 302
AsuHPI	GGTGA	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	305
BccI	CCATC	3 cut(s)	200, 250, 313
BciT130I	CCWGG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	301, 302
BmiI	GGNNCC	2 cut(s)	194, 303
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	120, 168
BsaJI	CCNNGG	3 cut(s)	147, 297, 320
Bse1I	ACTGG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	147, 297, 320
BseGI	GGATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	192
BsiWI	CGTACG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	303
Bsp120I	GGGCCC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	194, 303
BspMAI	CTGCAG	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	147, 297, 320
BssT1I	CCWWGG	2 cut(s)	147, 297
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 280, 300
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	301, 302
Csp6I	GTAC	2 cut(s)	23, 193
CviJI	RGCY	5 cut(s)	32, 127, 138, 283, 303
CviKI_1	RGCY	5 cut(s)	32, 127, 138, 283, 303
CviQI	GTAC	2 cut(s)	23, 193
DdeI	CTNAG	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	147, 297
Eco24I	GRGCYC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	147, 297
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	2 cut(s)	147, 297
FaiI	YATR	2 cut(s)	39, 60
FaqI	GGGAC	1 cut(s)	239
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	30
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	61, 248
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	62, 115, 133, 181, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 280, 300
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	25
KpnI	GGTACC	1 cut(s)	196
LpnPI	CCDG	8 cut(s)	101, 105, 175, 209, 260, 270, 273, 300
LweI	GCATC	2 cut(s)	120, 168
MaeII	ACGT	1 cut(s)	25
MboII	GAAGA	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	4 cut(s)	40, 216, 242, 294
MseI	TTAA	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	112, 280, 300
NlaIV	GGNNCC	2 cut(s)	194, 303
PaqCI	CACCTGC	1 cut(s)	106
Pfl23II	CGTACG	1 cut(s)	22
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspLI	CGTACG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	194, 303
PspOMI	GGGCCC	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	301, 302
PstI	CTGCAG	1 cut(s)	117
RsaI	GTAC	2 cut(s)	24, 194
RsaNI	GTAC	2 cut(s)	23, 193
SaqAI	TTAA	1 cut(s)	123
Sau96I	GGNCC	2 cut(s)	301, 302
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	8 cut(s)	28, 34, 120, 129, 140, 198, 234, 240
SfaNI	GCATC	2 cut(s)	120, 168
SfcI	CTRYAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	147, 297
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.