Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

13441576 .. 13444009

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG159800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCCGAAGCATCCAGAGATCGATGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCCTCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCCGTCCTTTCGGCGGCCCACCAGGCGACCGCCCTCGTGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCGGTGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGGGTGCTCCAACAAGACCTGCCTTCGGTCGTGGAGCTGGTGGTTTTGGTGCAGGCCCTGCTAGCTCTAATCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

155

Amino Acids

16.74

Weight (kDa)

9.81

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	1 - 66	2e-31	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	3 cut(s)	28, 168, 415
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	114
AciI	CCGC	4 cut(s)	207, 225, 241, 345
AcoI	YGGCCR	1 cut(s)	211
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	7 cut(s)	96, 166, 224, 263, 323, 386, 413
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	3 cut(s)	95, 232, 328
AluBI	AGCT	4 cut(s)	49, 60, 425, 453
AluI	AGCT	4 cut(s)	49, 60, 425, 453
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	4 cut(s)	211, 226, 250, 442
Asp718I	GGTACC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	5 cut(s)	227, 251, 314, 326, 443
AsuHPI	GGTGA	6 cut(s)	52, 112, 278, 302, 347, 359
AsuNHI	GCTAGC	1 cut(s)	449
AvaII	GGWCC	2 cut(s)	314, 326
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	364
BauI	CACGAG	2 cut(s)	246, 318
Bbv12I	GWGCWC	1 cut(s)	397
BccI	CCATC	3 cut(s)	122, 263, 293
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	3 cut(s)	97, 234, 330
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	2 cut(s)	35, 373
BfuAI	ACCTGC	3 cut(s)	28, 168, 415
BglI	GCCNNNNNGGC	2 cut(s)	234, 249
BisI	GCNGC	1 cut(s)	226
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	3 cut(s)	97, 234, 330
Bme18I	GGWCC	2 cut(s)	314, 326
BmgT120I	GGNCC	5 cut(s)	227, 251, 314, 326, 443
BmiI	GGNNCC	2 cut(s)	116, 361
BmrFI	CCNGG	3 cut(s)	97, 234, 330
BmsI	GCATC	3 cut(s)	19, 42, 90
BmtI	GCTAGC	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	163, 173
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	69, 165, 307
Bsc4I	CCNNNNNNNGG	7 cut(s)	96, 166, 224, 263, 323, 386, 413
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	3 cut(s)	97, 234, 330
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	69, 165, 307
BseGI	GGATG	2 cut(s)	10, 105
BseLI	CCNNNNNNNGG	7 cut(s)	96, 166, 224, 263, 323, 386, 413
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	459
Bsh1285I	CGRYCG	3 cut(s)	214, 241, 418
BshFI	GGCC	4 cut(s)	213, 228, 252, 444
BshNI	GGYRCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	3 cut(s)	214, 241, 418
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	7 cut(s)	96, 166, 224, 263, 323, 386, 413
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	4 cut(s)	213, 228, 252, 444
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	3 cut(s)	180, 364, 397
Bsp143I	GATC	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	4 cut(s)	207, 225, 241, 345
BspANI	GGCC	4 cut(s)	213, 228, 252, 444
BspDI	ATCGAT	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	116, 361
BspMAI	CTGCAG	1 cut(s)	39
BspMI	ACCTGC	3 cut(s)	28, 168, 415
BspOI	GCTAGC	1 cut(s)	453
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	69, 165, 307
BssMI	GATC	1 cut(s)	18
BssSI	CACGAG	2 cut(s)	246, 318
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	2 cut(s)	246, 318
Bst2UI	CCWGG	3 cut(s)	97, 234, 330
Bst4CI	ACNGT	2 cut(s)	296, 308
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	5 cut(s)	198, 207, 211, 442, 451
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	307
BstEII	GGTNACC	2 cut(s)	290, 302
BstF5I	GGATG	2 cut(s)	10, 105
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	18
BstMCI	CGRYCG	3 cut(s)	214, 241, 418
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 202, 206, 234, 249, 258, 446, 450
BstNI	CCWGG	3 cut(s)	97, 234, 330
BstPI	GGTNACC	2 cut(s)	290, 302
BstSCI	CCNGG	3 cut(s)	95, 232, 328
BstSFI	CTRYAG	2 cut(s)	35, 373
BstSLI	GKGCMC	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	213, 228, 252, 444
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	10, 105
BveI	ACCTGC	3 cut(s)	28, 168, 415
Cac8I	GCNNGC	5 cut(s)	198, 207, 211, 442, 451
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	5 cut(s)	227, 251, 314, 326, 443
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	115
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	211
EagI	CGGCCG	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	314, 326
Eco52I	CGGCCG	1 cut(s)	211
Eco91I	GGTNACC	2 cut(s)	290, 302
EcoO109I	RGGNCCY	2 cut(s)	314, 443
EcoO65I	GGTNACC	2 cut(s)	290, 302
EcoRII	CCWGG	3 cut(s)	95, 232, 328
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	69
FaiI	YATR	1 cut(s)	78
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	226
HaeIII	GGCC	4 cut(s)	213, 228, 252, 444
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	6 cut(s)	52, 112, 278, 302, 347, 359
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	14, 142, 190
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	3 cut(s)	100, 390, 421
HpyCH4III	ACNGT	2 cut(s)	296, 308
HpyCH4V	TGCA	4 cut(s)	37, 55, 103, 440
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 202, 206, 234, 249, 258, 446, 450
HpyF3I	CTNAG	1 cut(s)	201
HspAI	GCGC	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	3 cut(s)	359, 400, 422
LweI	GCATC	3 cut(s)	19, 42, 90
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	4 cut(s)	290, 302, 335, 347
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MhlI	GDGCHC	3 cut(s)	180, 364, 397
MmeI	TCCRAC	1 cut(s)	422
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	2 cut(s)	45, 466
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	3 cut(s)	97, 234, 330
MvaI	CCWGG	3 cut(s)	97, 234, 330
MwoI	GCNNNNNNNGC	8 cut(s)	34, 202, 206, 234, 249, 258, 446, 450
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	1 cut(s)	18
NgoMIV	GCCGGC	1 cut(s)	209
NheI	GCTAGC	1 cut(s)	449
NlaIV	GGNNCC	2 cut(s)	116, 361
NmuCI	GTSAC	3 cut(s)	290, 335, 347
PaqCI	CACCTGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	3 cut(s)	95, 232, 328
PspEI	GGTNACC	2 cut(s)	290, 302
PspGI	CCWGG	3 cut(s)	95, 232, 328
PspN4I	GGNNCC	2 cut(s)	116, 361
PspPI	GGNCC	5 cut(s)	227, 251, 314, 326, 443
PspPPI	RGGWCCY	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	45, 466
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	5 cut(s)	227, 251, 314, 326, 443
ScrFI	CCNGG	3 cut(s)	97, 234, 330
SduI	GDGCHC	3 cut(s)	180, 364, 397
SfaNI	GCATC	3 cut(s)	19, 42, 90
SfcI	CTRYAG	2 cut(s)	35, 373
SinI	GGWCC	2 cut(s)	314, 326
SmlI	CTYRAG	2 cut(s)	142, 188
SmoI	CTYRAG	2 cut(s)	142, 188
SsiI	CCGC	4 cut(s)	207, 225, 241, 345
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	95, 232, 328
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	296, 308
TaqI	TCGA	1 cut(s)	21
TaqII	GACCGA	1 cut(s)	404
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	45, 466
Tru9I	TTAA	2 cut(s)	45, 466
TseFI	GTSAC	3 cut(s)	290, 335, 347
Tsp45I	GTSAC	3 cut(s)	290, 335, 347
VpaK11BI	GGWCC	2 cut(s)	314, 326
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.