Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Forward (+)

13675537 .. 13677055

Gene Structure 1519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGGAAGAAGTGTGATTTATGTAACGGTGTTGCAAGAATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGATTGCGACGGTAAAGTTCACGGCGCTAATTTCTTGGTAGCTAAACACACGCGTTGTCTTCTCTGTAGCGCTTGTCAGTCTCTTACGCCGTGGAAAGCTACTGGGCTTCGTCTTGGCCCAACTTTCTCCGTCTGCGAGTCATGCGTCGCTCTTAAAAACGCCGGCGGTGGCCGTGGAAACAGAGTTTTATCGGAGAATCGTGGTCAGGAGGAGGTTAATAGTTTCGAGTCCGAAGAAGATCGGATTAGAGAAGATCACGGTGACGGTGACGACGCGGAGTCTTACGATGATGATGAGGAAGAAGATGAGGATGAAGAGTACAGCGACGATGAGGATGAGGATGATGATGAGGATGGTGATGATGAGGAAGCGGAGAATCAAGTTGTGCCGTGGTCTGCGGCGGCGCAAGTTCCTCCGGTGATGAGTTCTTCATCTTCTGACGGAGGAAGCGGAGGTTCAGTGACGAAGAGGACGAGGGCTAGAGAGAATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAGCTCTTCAGCTCAAGGGTCAAACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

223

Amino Acids

24.13

Weight (kDa)

4.22

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	3 - 45	6.8e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	127, 350
AciI	CCGC	6 cut(s)	240, 350, 446, 473, 476, 525
AcoI	YGGCCR	2 cut(s)	244, 629
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	1 cut(s)	395
AfeI	AGCGCT	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	637
AhdI	GACNNNNNGTC	1 cut(s)	352
AluBI	AGCT	5 cut(s)	62, 116, 173, 600, 608
AluI	AGCT	5 cut(s)	62, 116, 173, 600, 608
Alw26I	GTCTC	1 cut(s)	159
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	3 cut(s)	190, 244, 629
ApoI	RAATTY	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	601
AspLEI	GCGC	3 cut(s)	101, 146, 481
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	4 cut(s)	347, 353, 443, 505
BbsI	GAAGAC	1 cut(s)	125
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	5 cut(s)	112, 148, 231, 448, 616
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	63, 555
BfmI	CTRYAG	1 cut(s)	139
BfoI	RGCGCY	2 cut(s)	102, 147
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	2 cut(s)	474, 477
BlsI	GCNGC	2 cut(s)	475, 478
BmeRI	GACNNNNNGTC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	164, 247, 464
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	181
BseDI	CCNNGG	3 cut(s)	164, 247, 464
BseGI	GGATG	4 cut(s)	391, 415, 421, 433
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	299
BseX3I	CGGCCG	1 cut(s)	629
Bsh1236I	CGCG	2 cut(s)	127, 350
Bsh1285I	CGRYCG	2 cut(s)	632, 644
BshFI	GGCC	3 cut(s)	192, 246, 631
BsiEI	CGRYCG	2 cut(s)	632, 644
BsiSI	CCGG	2 cut(s)	237, 491
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	192, 246, 631
Bsp143I	GATC	6 cut(s)	55, 313, 328, 568, 591, 641
BspACI	CCGC	6 cut(s)	240, 350, 446, 473, 476, 525
BspANI	GGCC	3 cut(s)	192, 246, 631
BspFNI	CGCG	2 cut(s)	127, 350
BspQI	GCTCTTC	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	164, 247, 464
BssMI	GATC	6 cut(s)	55, 313, 328, 568, 591, 641
Bst4CI	ACNGT	5 cut(s)	29, 86, 335, 341, 661
Bst6I	CTCTTC	3 cut(s)	384, 536, 607
BstC8I	GCNNGC	1 cut(s)	238
BstDSI	CCRYGG	3 cut(s)	164, 247, 464
BstF5I	GGATG	4 cut(s)	391, 415, 421, 433
BstFNI	CGCG	2 cut(s)	127, 350
BstH2I	RGCGCY	2 cut(s)	102, 147
BstHHI	GCGC	3 cut(s)	101, 146, 481
BstKTI	GATC	6 cut(s)	58, 316, 331, 571, 594, 644
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	6 cut(s)	55, 313, 328, 568, 591, 641
BstMCI	CGRYCG	2 cut(s)	632, 644
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 637
BstSFI	CTRYAG	1 cut(s)	139
BstUI	CGCG	2 cut(s)	127, 350
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BstZI	CGGCCG	1 cut(s)	629
BsuRI	GGCC	3 cut(s)	192, 246, 631
BtgI	CCRYGG	3 cut(s)	164, 247, 464
BtsCI	GGATG	4 cut(s)	391, 415, 421, 433
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	238
CfoI	GCGC	3 cut(s)	101, 146, 481
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	2 cut(s)	208, 356
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	216
CviQI	GTAC	1 cut(s)	394
DpnI	GATC	6 cut(s)	57, 315, 330, 570, 593, 643
DpnII	GATC	6 cut(s)	55, 313, 328, 568, 591, 641
DraI	TTTAAA	1 cut(s)	652
DriI	GACNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	2 cut(s)	244, 629
EagI	CGGCCG	1 cut(s)	629
Eam1104I	CTCTTC	3 cut(s)	384, 536, 607
Eam1105I	GACNNNNNGTC	1 cut(s)	352
EarI	CTCTTC	3 cut(s)	384, 536, 607
EclXI	CGGCCG	1 cut(s)	629
Eco47III	AGCGCT	1 cut(s)	145
Eco52I	CGGCCG	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	562
FaeI	CATG	1 cut(s)	219
FaiI	YATR	3 cut(s)	22, 70, 217
FatI	CATG	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	474, 477
FokI	GGATG	4 cut(s)	398, 422, 428, 440
Fsp4HI	GCNGC	2 cut(s)	474, 477
FspBI	CTAG	2 cut(s)	63, 555
GlaI	GCGC	3 cut(s)	100, 145, 480
GluI	GCNGC	2 cut(s)	474, 477
HaeII	RGCGCY	2 cut(s)	102, 147
HaeIII	GGCC	3 cut(s)	192, 246, 631
HapII	CCGG	2 cut(s)	237, 491
HgaI	GACGC	2 cut(s)	208, 356
HhaI	GCGC	3 cut(s)	101, 146, 481
Hin1II	CATG	1 cut(s)	219
Hin6I	GCGC	3 cut(s)	99, 144, 479
HinP1I	GCGC	3 cut(s)	99, 144, 479
HinfI	GANTC	6 cut(s)	50, 212, 271, 302, 353, 451
HpaII	CCGG	2 cut(s)	237, 491
HphI	GGTGA	4 cut(s)	347, 353, 443, 505
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	8 cut(s)	55, 268, 307, 318, 514, 568, 583, 596
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	4 cut(s)	86, 224, 350, 404
HpyCH4III	ACNGT	5 cut(s)	29, 86, 335, 341, 661
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 637
Hsp92II	CATG	1 cut(s)	219
HspAI	GCGC	3 cut(s)	99, 144, 479
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	6 cut(s)	55, 313, 328, 568, 591, 641
LguI	GCTCTTC	1 cut(s)	607
LmnI	GCTCC	1 cut(s)	584
LpnPI	CCDG	4 cut(s)	162, 250, 266, 504
MaeI	CTAG	2 cut(s)	63, 555
MaeIII	GTNAC	4 cut(s)	23, 335, 341, 535
MalI	GATC	6 cut(s)	57, 315, 330, 570, 593, 643
MboI	GATC	6 cut(s)	55, 313, 328, 568, 591, 641
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	2 cut(s)	103, 562
MluI	ACGCGT	1 cut(s)	125
MlyI	GAGTC	4 cut(s)	59, 221, 311, 362
MreI	CGCCGGCG	1 cut(s)	236
MroNI	GCCGGC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	601
MseI	TTAA	4 cut(s)	228, 291, 651, 670
MspI	CCGG	2 cut(s)	237, 491
MvnI	CGCG	2 cut(s)	127, 350
MwoI	GCNNNNNNNGC	2 cut(s)	216, 637
NaeI	GCCGGC	1 cut(s)	238
NdeII	GATC	6 cut(s)	55, 313, 328, 568, 591, 641
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	607
NmuCI	GTSAC	3 cut(s)	335, 341, 535
PciSI	GCTCTTC	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
PdiI	GCCGGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	271, 451
PkrI	GCNGC	2 cut(s)	475, 478
Ple19I	CGATCG	1 cut(s)	644
PleI	GAGTC	4 cut(s)	58, 220, 310, 361
PpsI	GAGTC	4 cut(s)	58, 220, 310, 361
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	568
PvuI	CGATCG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SapI	GCTCTTC	1 cut(s)	607
SaqAI	TTAA	4 cut(s)	228, 291, 651, 670
SatI	GCNGC	2 cut(s)	474, 477
Sau3AI	GATC	6 cut(s)	55, 313, 328, 568, 591, 641
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	4 cut(s)	59, 221, 311, 362
SetI	ASST	7 cut(s)	64, 118, 175, 291, 532, 602, 610
SfcI	CTRYAG	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	2 cut(s)	103, 562
SsiI	CCGC	6 cut(s)	240, 350, 446, 473, 476, 525
SspMI	CTAG	2 cut(s)	63, 555
TaaI	ACNGT	5 cut(s)	29, 86, 335, 341, 661
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	103, 562
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	2 cut(s)	476, 479
TfiI	GAWTC	2 cut(s)	271, 451
Tru1I	TTAA	4 cut(s)	228, 291, 651, 670
Tru9I	TTAA	4 cut(s)	228, 291, 651, 670
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	3 cut(s)	335, 341, 535
Tsp45I	GTSAC	3 cut(s)	335, 341, 535
TspDTI	ATGAA	2 cut(s)	402, 495
TspGWI	ACGGA	2 cut(s)	193, 531
TspRI	CASTG	1 cut(s)	540
XapI	RAATTY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	601
XspI	CTAG	2 cut(s)	63, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.