Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

61594150 .. 61597166

Gene Structure 3017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0486200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

ATGGCAACATCATCATCCTCAGAATTAGCATGGCCGATAGCAAAGCCTAATTGCGAAACTCATTGCGGAAATATTAGCATCCCATACCCTTTCGGGATCGGACCTAACAAAGATTGTTACTTCGACGAATGGTTTGAAATAGAGTGCGTCAACAACTCCACAGGTCCTCACAAGCCTTTCTTGAAGCGCACACAGCCGAAGCTAGAGGTGCTGAATATTTCAATGGAAGGCACGCTTCTAGTTAACAACCCGGCCACTTTCTTCTACGAAAGAAACAGAACTCGGCAATTGGCCCCGAATTTGACAGAAGGCCCTTTCATATATTCACAGACATACAACAGATTCACTGCAATGAGTTGCGGATTCTCGGCGCTGGTAAGGTCAGATTATGATGAGCGTGTGCTTGGTGGGTGCTTTTCAGCTTGTAATACAGATAGTTCGAGTATATACAATTATGGATATGATTGTATTGATGGTATTAACTGCTGCCAGGCTACTCTCCCTCCATATCTCACTTTGATCACTACAAAGATACAATATTCCGAAACTGATGGAGAATTGTTGACTTATTACAACTACGCCTTCCTGGCCGAGCAAACATGGTTTCAGAATAAGAATTTTAAGAATACCACTATGGAGCTCAAGAATGCATGGTTTGAGCAAAACATATCGAAATTCAAGGCTATAGAGGCGAGTATGGGCATGTTTCCTGTGGTTCTTGATTGGAGCATTAGATTATATGATACTAGTTCATATTTCGCAATATTTAAAGGGTTCATCGGATCACACTCGAGCTATAATGACTCAAGACCCTATTGCGAGGCTGCTACTTCGTCGTACAATAATGTTCCAAGGCTTGACTGCAGCTGCGTCTGTCCACTGGGTTTTGAAGGAAATCCTTATCTTCTCCAACCTTGTCAAGATATTGATGAATGCAAGGGGAGTAATCAGTGCGTGACTCAAGGAGAAACATGTGAGAATTTTGTTGGAGGGTACAAATGCTATTCAAATGTAACTGGCGCTACATGTGAATACTTTGCTGATCGTTATGGTGTAGCAATAGCTACATCATGCCACATAAATAGCAGTCCCTTTGCTAGGGCCGATAATATCAGAACTATTCTTCTAGGTCTTGGTGCGGGTGTCGGGCTGTTGCTACTACTTATTGGTACATGGTTGGTGTACAAAGTGGTGAAGAAAAGGAAAAAGATTCAGCGCAAGCAAATATACTTCAAACGAAATGGCGGTTTATTGTTGGAACAACAATTATCGTCAGGTGAAGTTAATGTTGAGAAAATTAAGTTGTTCAAGTCAAAGGAATTAGAGAAGTCTACGGATAGTTACAATAACGATAGAATTCTTGGCCAAGGAGCTCAAGGTATTGTTTATAAAGGAATGTTGGCAGACGGAAGAATTGTTGCTGTGAAAAAGTCGAAAATAGTCGATGAAGGAAAGCTTACAGAATTCATCAATGAGGTTGTCATTCTTTCACAAATCAACCATAGGAATGTGGTTCAACTATTGGGATGTTGTTTGGAGACGGAAGTTCCTATTTTAGTTTATGAATTCATACCGAATGGAACACTTTCAGGGTATATCCATGGACAAAATGAGGAATATCCACTTACATGGAAAATGCGCTTACGAATTGCTACAGAAATTGCAGGAGCTCTTTCTTACTTACATTGTGCAGCTTTATTTCCCATTTATCATAGAGACATCAAGTCTTCAAACATACTCTTAGATGAGAAATACAGAGCAAAAGTTGCTGACTTTGGAACTTCAAGATCAATTGCCATTGACCAAACTCACCTAACAACACTTGTACACGGCACATTTGGCTACTTGGACCCTGAATACTTTCAGTCATGTCAGTTTACTGACAAAAGTGACGTGTATAGCTTTGGAGTTGTCCTTGTTGAGCTCTTGACCGGTCGAAAGCCAATTTCTGCAATAACAAGGCCACAAGAAAAAACAAGGCCACAAGAAGAAGAATATAGAAGTCTTGCCACTAATTTCATTGTTTCAATGCAGAAAAATATTCTATCTGACATTCTCGATGCACGAGTTCGGAAGGAGGGCAAAGGAAAAGAGATTAGGGTAGTTTCCAACCTTGCACGAAGATGCTTGGAATTAAATGGAAGAAATCGCCCTACAATGAGAGAGGTCACAATGCAGTTGGAGGCTATCCAAATGTTGGGAGAAAATGCTCAAAATGATGAAGGTGTTGAATATTCAGAAAATGATTCCGTTAAGCGTTGGGATGTTGTTTCAAGCACAACTGATCAGTCAGCTTCGTATGGTGGTCCGACTTCATCCTTACTGGAGCATCAACAATTAACCACTAAGACCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

785

Amino Acids

88.43

Weight (kDa)

6.21

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	18 - 79	4.5e-12	Wall-associated receptor kinase galacturonan-binding
Pkinase	PF00069	448 - 724	3.5e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	451 - 727	1.4e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1389
AccB7I	CCANNNNNTGG	1 cut(s)	2197
AccI	GTMKAC	1 cut(s)	1331
AciI	CCGC	4 cut(s)	66, 360, 1139, 1245
AclWI	GGATC	2 cut(s)	104, 790
AcoI	YGGCCR	4 cut(s)	32, 252, 588, 1363
AcsI	RAATTY	7 cut(s)	298, 616, 674, 979, 1356, 1463, 1565
AfaI	GTAC	5 cut(s)	839, 995, 1171, 1184, 1827
AfiI	CCNNNNNNNGG	2 cut(s)	1098, 2197
AflIII	ACRYGT	3 cut(s)	971, 1025, 1893
AgeI	ACCGGT	1 cut(s)	1931
AhdI	GACNNNNNGTC	1 cut(s)	1723
AhlI	ACTAGT	1 cut(s)	746
AjiI	CACGTC	1 cut(s)	1894
AjnI	CCWGG	3 cut(s)	489, 585, 2351
Alw21I	GWGCWC	4 cut(s)	642, 1375, 1672, 1926
Alw26I	GTCTC	2 cut(s)	1532, 1710
AlwI	GGATC	2 cut(s)	104, 790
Ama87I	CYCGRG	1 cut(s)	790
AoxI	GGCC	9 cut(s)	32, 252, 291, 310, 588, 1101, 1363, 1961, 1979
ApeKI	GCWGC	5 cut(s)	486, 824, 864, 867, 1691
ApoI	RAATTY	7 cut(s)	298, 616, 674, 979, 1356, 1463, 1565
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AsiGI	ACCGGT	1 cut(s)	1931
Asp700I	GAANNNNTTC	2 cut(s)	1585, 1860
AspLEI	GCGC	5 cut(s)	189, 373, 1022, 1218, 1641
AspS9I	GGNCC	7 cut(s)	101, 164, 292, 311, 1101, 1849, 2306
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	1204, 1289, 1802
AvaI	CYCGRG	1 cut(s)	790
AvaII	GGWCC	4 cut(s)	101, 164, 1849, 2306
BalI	TGGCCA	1 cut(s)	1365
BanII	GRGCYC	4 cut(s)	642, 1375, 1672, 1926
BauI	CACGAG	1 cut(s)	2064
BbsI	GAAGAC	1 cut(s)	1719
Bbv12I	GWGCWC	4 cut(s)	642, 1375, 1672, 1926
BbvI	GCAGC	5 cut(s)	473, 811, 854, 876, 1703
BccI	CCATC	2 cut(s)	467, 545
BceAI	ACGGC	1 cut(s)	1846
BciT130I	CCWGG	3 cut(s)	491, 587, 2353
BclI	TGATCA	2 cut(s)	519, 2284
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	1532, 1710
BcuI	ACTAGT	1 cut(s)	746
BfaI	CTAG	5 cut(s)	203, 239, 747, 1098, 1127
BfmI	CTRYAG	3 cut(s)	684, 862, 1653
BfoI	RGCGCY	2 cut(s)	374, 1023
BglI	GCCNNNNNGGC	1 cut(s)	587
BisI	GCNGC	5 cut(s)	487, 825, 865, 868, 1692
BlsI	GCNGC	5 cut(s)	488, 826, 866, 869, 1693
Bme1390I	CCNGG	4 cut(s)	251, 491, 587, 2353
Bme18I	GGWCC	4 cut(s)	101, 164, 1849, 2306
BmeRI	GACNNNNNGTC	1 cut(s)	1723
BmeT110I	CYCGRG	1 cut(s)	790
BmgBI	CACGTC	1 cut(s)	1894
BmgT120I	GGNCC	7 cut(s)	101, 164, 292, 311, 1101, 1849, 2306
BmiI	GGNNCC	2 cut(s)	294, 1851
BmrFI	CCNGG	4 cut(s)	251, 491, 587, 2353
BmrI	ACTGGG	1 cut(s)	890
BmsI	GCATC	4 cut(s)	87, 2050, 2114, 2338
BmuI	ACTGGG	1 cut(s)	890
BpiI	GAAGAC	1 cut(s)	1719
BpmI	CTGGAG	1 cut(s)	2345
BpuEI	CTTGAG	4 cut(s)	626, 790, 945, 1359
BpuMI	CCSGG	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	851, 1366, 1600
BsaWI	WCCGGW	1 cut(s)	1931
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	1098, 2197
Bse118I	RCCGGY	1 cut(s)	1931
Bse1I	ACTGG	3 cut(s)	885, 1021, 2328
Bse3DI	GCAATG	2 cut(s)	61, 357
BseBI	CCWGG	3 cut(s)	491, 587, 2353
BseDI	CCNNGG	3 cut(s)	851, 1366, 1600
BseGI	GGATG	5 cut(s)	14, 78, 1532, 2269, 2315
BseLI	CCNNNNNNNGG	2 cut(s)	1098, 2197
BseMI	GCAATG	2 cut(s)	61, 357
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	3 cut(s)	885, 1021, 2328
BseXI	GCAGC	5 cut(s)	473, 811, 854, 876, 1703
BsgI	GTGCAG	1 cut(s)	1710
Bsh1285I	CGRYCG	1 cut(s)	1936
BshFI	GGCC	9 cut(s)	34, 254, 293, 312, 590, 1103, 1365, 1963, 1981
BshTI	ACCGGT	1 cut(s)	1931
BsiEI	CGRYCG	1 cut(s)	1936
BsiHKAI	GWGCWC	4 cut(s)	642, 1375, 1672, 1926
BsiHKCI	CYCGRG	1 cut(s)	790
BsiSI	CCGG	2 cut(s)	251, 1932
BslFI	GGGAC	1 cut(s)	1074
BslI	CCNNNNNNNGG	2 cut(s)	1098, 2197
BsmAI	GTCTC	2 cut(s)	1532, 1710
BsmBI	CGTCTC	1 cut(s)	1532
BsmFI	GGGAC	1 cut(s)	1074
BsmI	GAATGC	2 cut(s)	652, 938
BsnI	GGCC	9 cut(s)	34, 254, 293, 312, 590, 1103, 1365, 1963, 1981
BsoBI	CYCGRG	1 cut(s)	790
Bsp1286I	GDGCHC	4 cut(s)	642, 1375, 1672, 1926
Bsp1407I	TGTACA	2 cut(s)	1182, 1825
Bsp143I	GATC	6 cut(s)	96, 519, 782, 1042, 1787, 2284
Bsp19I	CCATGG	1 cut(s)	1600
BspACI	CCGC	4 cut(s)	66, 360, 1139, 1245
BspANI	GGCC	9 cut(s)	34, 254, 293, 312, 590, 1103, 1365, 1963, 1981
BspCNI	CTCAG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	294, 1851
BspMAI	CTGCAG	1 cut(s)	866
BspPI	GGATC	2 cut(s)	104, 790
BsrDI	GCAATG	2 cut(s)	61, 357
BsrFI	RCCGGY	1 cut(s)	1931
BsrGI	TGTACA	2 cut(s)	1182, 1825
BsrI	ACTGG	3 cut(s)	885, 1021, 2328
BssAI	RCCGGY	1 cut(s)	1931
BssECI	CCNNGG	3 cut(s)	851, 1366, 1600
BssMI	GATC	6 cut(s)	96, 519, 782, 1042, 1787, 2284
BssSI	CACGAG	1 cut(s)	2064
BssT1I	CCWWGG	3 cut(s)	851, 1366, 1600
Bst2BI	CACGAG	1 cut(s)	2064
Bst2UI	CCWGG	3 cut(s)	491, 587, 2353
BstAPI	GCANNNNNTGC	1 cut(s)	1766
BstAUI	TGTACA	2 cut(s)	1182, 1825
BstC8I	GCNNGC	2 cut(s)	233, 1220
BstDEI	CTNAG	3 cut(s)	19, 1741, 2346
BstDSI	CCRYGG	1 cut(s)	1600
BstENI	CCTNNNNNAGG	1 cut(s)	1096
BstF5I	GGATG	5 cut(s)	14, 78, 1532, 2269, 2315
BstH2I	RGCGCY	2 cut(s)	374, 1023
BstHHI	GCGC	5 cut(s)	189, 373, 1022, 1218, 1641
BstKTI	GATC	6 cut(s)	99, 522, 785, 1045, 1790, 2287
BstMAI	GTCTC	2 cut(s)	1532, 1710
BstMBI	GATC	6 cut(s)	96, 519, 782, 1042, 1787, 2284
BstMCI	CGRYCG	1 cut(s)	1936
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 208, 587, 689, 1766, 1839
BstNI	CCWGG	3 cut(s)	491, 587, 2353
BstNSI	RCATGY	3 cut(s)	706, 975, 1029
BstSCI	CCNGG	4 cut(s)	249, 489, 585, 2351
BstSFI	CTRYAG	3 cut(s)	684, 862, 1653
BstV1I	GCAGC	5 cut(s)	473, 811, 854, 876, 1703
BstV2I	GAAGAC	1 cut(s)	1719
BstXI	CCANNNNNNTGG	1 cut(s)	1629
BsuRI	GGCC	9 cut(s)	34, 254, 293, 312, 590, 1103, 1365, 1963, 1981
BtgI	CCRYGG	1 cut(s)	1600
BtrI	CACGTC	1 cut(s)	1894
BtsCI	GGATG	5 cut(s)	14, 78, 1532, 2269, 2315
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	345, 878, 956
Cac8I	GCNNGC	2 cut(s)	233, 1220
CfoI	GCGC	5 cut(s)	189, 373, 1022, 1218, 1641
Cfr10I	RCCGGY	1 cut(s)	1931
Cfr13I	GGNCC	7 cut(s)	101, 164, 292, 311, 1101, 1849, 2306
CseI	GACGC	2 cut(s)	136, 859
CsiI	ACCWGGT	1 cut(s)	2351
Csp6I	GTAC	5 cut(s)	838, 994, 1170, 1183, 1826
CspAI	ACCGGT	1 cut(s)	1931
CviQI	GTAC	5 cut(s)	838, 994, 1170, 1183, 1826
DdeI	CTNAG	3 cut(s)	19, 1741, 2346
DpnI	GATC	6 cut(s)	98, 521, 784, 1044, 1789, 2286
DpnII	GATC	6 cut(s)	96, 519, 782, 1042, 1787, 2284
DraI	TTTAAA	1 cut(s)	769
DriI	GACNNNNNGTC	1 cut(s)	1723
EaeI	YGGCCR	4 cut(s)	32, 252, 588, 1363
Eam1105I	GACNNNNNGTC	1 cut(s)	1723
Ecl136II	GAGCTC	4 cut(s)	640, 1373, 1670, 1924
Eco130I	CCWWGG	3 cut(s)	851, 1366, 1600
Eco24I	GRGCYC	4 cut(s)	642, 1375, 1672, 1926
Eco47I	GGWCC	4 cut(s)	101, 164, 1849, 2306
Eco53kI	GAGCTC	4 cut(s)	640, 1373, 1670, 1924
Eco88I	CYCGRG	1 cut(s)	790
EcoICRI	GAGCTC	4 cut(s)	640, 1373, 1670, 1924
EcoNI	CCTNNNNNAGG	1 cut(s)	1096
EcoO109I	RGGNCCY	2 cut(s)	164, 311
EcoRI	GAATTC	3 cut(s)	1356, 1463, 1565
EcoRII	CCWGG	3 cut(s)	489, 585, 2351
EcoT14I	CCWWGG	3 cut(s)	851, 1366, 1600
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	4 cut(s)	642, 1375, 1672, 1926
ErhI	CCWWGG	3 cut(s)	851, 1366, 1600
Esp3I	CGTCTC	1 cut(s)	1532
FalI	AAGNNNNNCTT	6 cut(s)	164, 196, 219, 251, 1440, 1472
FaqI	GGGAC	1 cut(s)	1074
FauI	CCCGC	1 cut(s)	1132
FbaI	TGATCA	2 cut(s)	519, 2284
FblI	GTMKAC	1 cut(s)	1331
Fnu4HI	GCNGC	5 cut(s)	487, 825, 865, 868, 1692
FokI	GGATG	4 cut(s)	65, 1539, 2276, 2302
FriOI	GRGCYC	4 cut(s)	642, 1375, 1672, 1926
Fsp4HI	GCNGC	5 cut(s)	487, 825, 865, 868, 1692
FspBI	CTAG	5 cut(s)	203, 239, 747, 1098, 1127
GlaI	GCGC	5 cut(s)	188, 372, 1021, 1217, 1640
GluI	GCNGC	5 cut(s)	487, 825, 865, 868, 1692
GsuI	CTGGAG	1 cut(s)	2345
HaeII	RGCGCY	2 cut(s)	374, 1023
HaeIII	GGCC	9 cut(s)	34, 254, 293, 312, 590, 1103, 1365, 1963, 1981
HapII	CCGG	2 cut(s)	251, 1932
HgaI	GACGC	2 cut(s)	136, 859
HhaI	GCGC	5 cut(s)	189, 373, 1022, 1218, 1641
Hin6I	GCGC	5 cut(s)	187, 371, 1020, 1216, 1639
HinP1I	GCGC	5 cut(s)	187, 371, 1020, 1216, 1639
HincII	GTYRAC	3 cut(s)	151, 244, 564
HindII	GTYRAC	3 cut(s)	151, 244, 564
HindIII	AAGCTT	1 cut(s)	1454
HinfI	GANTC	6 cut(s)	342, 363, 803, 958, 1210, 2246
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	251, 1932
HphI	GGTGA	3 cut(s)	1204, 1289, 1802
Hpy166II	GTNNAC	8 cut(s)	151, 244, 564, 878, 1183, 1332, 1828, 1878
Hpy188III	TCNNGA	9 cut(s)	94, 181, 643, 719, 807, 920, 1785, 1927, 2057
Hpy8I	GTNNAC	8 cut(s)	151, 244, 564, 878, 1183, 1332, 1828, 1878
Hpy99I	CGWCG	2 cut(s)	128, 838
HpyAV	CCTTC	7 cut(s)	221, 302, 592, 884, 1442, 2068, 2216
HpyCH4IV	ACGT	1 cut(s)	1893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 208, 587, 689, 1766, 1839
HpyF3I	CTNAG	3 cut(s)	19, 1741, 2346
HpySE526I	ACGT	1 cut(s)	1893
HspAI	GCGC	5 cut(s)	187, 371, 1020, 1216, 1639
Ksp22I	TGATCA	2 cut(s)	519, 2284
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	6 cut(s)	96, 519, 782, 1042, 1787, 2284
LmnI	GCTCC	5 cut(s)	637, 726, 1370, 1667, 2326
Lsp1109I	GCAGC	5 cut(s)	473, 811, 854, 876, 1703
LweI	GCATC	4 cut(s)	87, 2050, 2114, 2338
MabI	ACCWGGT	1 cut(s)	2351
MaeI	CTAG	5 cut(s)	203, 239, 747, 1098, 1127
MaeII	ACGT	1 cut(s)	1893
MaeIII	GTNAC	6 cut(s)	116, 955, 1012, 1340, 1889, 2167
MalI	GATC	6 cut(s)	98, 521, 784, 1044, 1789, 2286
MboI	GATC	6 cut(s)	96, 519, 782, 1042, 1787, 2284
MfeI	CAATTG	2 cut(s)	287, 1791
MhlI	GDGCHC	4 cut(s)	642, 1375, 1672, 1926
MlsI	TGGCCA	1 cut(s)	1365
MluNI	TGGCCA	1 cut(s)	1365
MlyI	GAGTC	2 cut(s)	797, 952
MmeI	TCCRAC	6 cut(s)	934, 967, 1236, 2133, 2160, 2333
Mox20I	TGGCCA	1 cut(s)	1365
Mph1103I	ATGCAT	1 cut(s)	652
MroXI	GAANNNNTTC	2 cut(s)	1585, 1860
MscI	TGGCCA	1 cut(s)	1365
MseI	TTAA	9 cut(s)	243, 480, 621, 768, 1284, 1299, 2135, 2253, 2339
MslI	CAYNNNNRTG	4 cut(s)	350, 1506, 1627, 2122
Msp20I	TGGCCA	1 cut(s)	1365
MspA1I	CMGCKG	1 cut(s)	867
MspI	CCGG	2 cut(s)	251, 1932
MspR9I	CCNGG	4 cut(s)	251, 491, 587, 2353
MunI	CAATTG	2 cut(s)	287, 1791
Mva1269I	GAATGC	2 cut(s)	652, 938
MvaI	CCWGG	3 cut(s)	491, 587, 2353
MwoI	GCNNNNNNNGC	6 cut(s)	193, 208, 587, 689, 1766, 1839
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	1600
NdeII	GATC	6 cut(s)	96, 519, 782, 1042, 1787, 2284
NlaIV	GGNNCC	2 cut(s)	294, 1851
NmeAIII	GCCGAG	3 cut(s)	262, 347, 616
NmuCI	GTSAC	3 cut(s)	955, 1889, 2167
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	3 cut(s)	706, 975, 1029
PaeR7I	CTCGAG	1 cut(s)	790
PciI	ACATGT	2 cut(s)	971, 1025
PctI	GAATGC	2 cut(s)	652, 938
PdmI	GAANNNNTTC	2 cut(s)	1585, 1860
PfeI	GAWTC	4 cut(s)	342, 363, 1210, 2246
PflMI	CCANNNNNTGG	1 cut(s)	2197
PinAI	ACCGGT	1 cut(s)	1931
PkrI	GCNGC	5 cut(s)	488, 826, 866, 869, 1693
PleI	GAGTC	2 cut(s)	797, 952
PpsI	GAGTC	2 cut(s)	797, 952
PpuMI	RGGWCCY	1 cut(s)	164
PscI	ACATGT	2 cut(s)	971, 1025
PsiI	TTATAA	1 cut(s)	1389
Psp124BI	GAGCTC	4 cut(s)	642, 1375, 1672, 1926
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	3 cut(s)	489, 585, 2351
PspGI	CCWGG	3 cut(s)	489, 585, 2351
PspN4I	GGNNCC	2 cut(s)	294, 1851
PspPI	GGNCC	7 cut(s)	101, 164, 292, 311, 1101, 1849, 2306
PspPPI	RGGWCCY	1 cut(s)	164
PspXI	VCTCGAGB	1 cut(s)	790
PstI	CTGCAG	1 cut(s)	866
PvuII	CAGCTG	1 cut(s)	867
RsaI	GTAC	5 cut(s)	839, 995, 1171, 1184, 1827
RsaNI	GTAC	5 cut(s)	838, 994, 1170, 1183, 1826
RseI	CAYNNNNRTG	4 cut(s)	350, 1506, 1627, 2122
SacI	GAGCTC	4 cut(s)	642, 1375, 1672, 1926
SaqAI	TTAA	9 cut(s)	243, 480, 621, 768, 1284, 1299, 2135, 2253, 2339
SatI	GCNGC	5 cut(s)	487, 825, 865, 868, 1692
Sau3AI	GATC	6 cut(s)	96, 519, 782, 1042, 1787, 2284
Sau96I	GGNCC	7 cut(s)	101, 164, 292, 311, 1101, 1849, 2306
SchI	GAGTC	2 cut(s)	797, 952
ScrFI	CCNGG	4 cut(s)	251, 491, 587, 2353
SduI	GDGCHC	4 cut(s)	642, 1375, 1672, 1926
SexAI	ACCWGGT	1 cut(s)	2351
SfaNI	GCATC	4 cut(s)	87, 2050, 2114, 2338
SfcI	CTRYAG	3 cut(s)	684, 862, 1653
Sfr274I	CTCGAG	1 cut(s)	790
SinI	GGWCC	4 cut(s)	101, 164, 1849, 2306
SlaI	CTCGAG	1 cut(s)	790
SmiMI	CAYNNNNRTG	4 cut(s)	350, 1506, 1627, 2122
SmlI	CTYRAG	5 cut(s)	641, 790, 805, 960, 1374
SmoI	CTYRAG	5 cut(s)	641, 790, 805, 960, 1374
SpeI	ACTAGT	1 cut(s)	746
SsiI	CCGC	4 cut(s)	66, 360, 1139, 1245
SspI	AATATT	6 cut(s)	73, 217, 539, 765, 2041, 2234
SspMI	CTAG	5 cut(s)	203, 239, 747, 1098, 1127
SstI	GAGCTC	4 cut(s)	642, 1375, 1672, 1926
StyD4I	CCNGG	4 cut(s)	249, 489, 585, 2351
StyI	CCWWGG	3 cut(s)	851, 1366, 1600
TaiI	ACGT	1 cut(s)	1896
TaqI	TCGA	8 cut(s)	123, 440, 671, 791, 1433, 1443, 1936, 2058
TatI	WGTACW	2 cut(s)	1182, 1825
TfiI	GAWTC	4 cut(s)	342, 363, 1210, 2246
Tru1I	TTAA	9 cut(s)	243, 480, 621, 768, 1284, 1299, 2135, 2253, 2339
Tru9I	TTAA	9 cut(s)	243, 480, 621, 768, 1284, 1299, 2135, 2253, 2339
TscAI	CASTG	3 cut(s)	352, 885, 956
TseFI	GTSAC	3 cut(s)	955, 1889, 2167
TseI	GCWGC	5 cut(s)	486, 824, 864, 867, 1691
Tsp45I	GTSAC	3 cut(s)	955, 1889, 2167
TspGWI	ACGGA	4 cut(s)	1349, 1422, 1556, 2239
TspRI	CASTG	3 cut(s)	352, 885, 956
Van91I	CCANNNNNTGG	1 cut(s)	2197
VpaK11BI	GGWCC	4 cut(s)	101, 164, 1849, 2306
XagI	CCTNNNNNAGG	1 cut(s)	1096
XapI	RAATTY	7 cut(s)	298, 616, 674, 979, 1356, 1463, 1565
XceI	RCATGY	3 cut(s)	706, 975, 1029
XhoI	CTCGAG	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	1331
XmnI	GAANNNNTTC	2 cut(s)	1585, 1860
XspI	CTAG	5 cut(s)	203, 239, 747, 1098, 1127
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.