RLG00000021259

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001915
Physical Location & Seq
Forward (+)
73479827 .. 73480707
881 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021259

Sequence Viewer

Length: 768 bp
ATGAAGAACTGCGAACTTTGTCACCTACCTGCTCGGACCTACTGCGAATCGGACCAGGCGATTCTCTGCTGGGACTGCGATTTCAAGGTTCACGGCGCCAATTTCCTGGTGGCCAGGCACTCCAGGACGCTCCTCTGCCACGCGTGCCACGCGCCGACTGCCTGGAAGGCCTCCGGCGAGAAACTCGGCCATACTTTTTCCGTTTGCGAGCGCTGTGTGGCGAGAAATGAAGGCAGAGACGACGAGGAAGAGAGCCAGGCTGGCAATGATGATACTACGGATGATGATGACCTCGATGACTCCGATTATGATGATGACGACGGCGATATTGATTTTGATGAGGACGGAGATAATCAGGTGGTGCCGTGGGGTTCGACGCCTCCTCCGCCAGCTGCGAGCTCTACCAGCAGCGACGAAGTTAACAATGACGGTAGATATGGTCGCCGATCAGTCGGCGCGGTTTCGTTGAAGCGAACCAGAGATAATGCTTCCGATCTTCGCTCTCTGGACGATCTCCGCCGTTTAGCCGCTCGACTGAGGGGTGAAACAGCTGGCACCGCCAATTCCGGTCGGTCAGGGACCGACGGCGGAGCCGCTTTGGTTGACTGCAGAAGACCTTCAAAAGACCGGAGAGTGGATCTAAACGGGTCGGGTCCGCGTTCCTCGCCCGCTATAGAGTCGACGAGGAGAAATCTCCGGCCAAATGGCCGTAAACTCAGCGAAGCCGTCGATCTTGACTGCTCAGAGCCTCGTATCCCTCCGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

256

Amino Acids

27.82

Weight (kDa)

4.82

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 2 - 43 2.2e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 3 cut(s) 95, 361, 554
AccBSI CCGCTC 1 cut(s) 530
AccI GTMKAC 1 cut(s) 680
AccII CGCG 4 cut(s) 143, 152, 458, 658
AciI CCGC 9 cut(s) 386, 458, 517, 528, 558, 588, 594, 656, 669
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 4 cut(s) 111, 187, 698, 706
AcyI GRCGYC 2 cut(s) 96, 377
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 634
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 3 cut(s) 85, 469, 621
AjnI CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
AluBI AGCT 3 cut(s) 392, 399, 551
AluI AGCT 3 cut(s) 392, 399, 551
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 645
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 5 cut(s) 111, 168, 187, 698, 706
ApeKI GCWGC 2 cut(s) 392, 408
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 4 cut(s) 98, 154, 213, 458
AspS9I GGNCC 4 cut(s) 36, 52, 579, 653
AsuHPI GGTGA 2 cut(s) 14, 554
AvaII GGWCC 4 cut(s) 36, 52, 579, 653
BalI TGGCCA 1 cut(s) 113
BanI GGYRCC 3 cut(s) 95, 361, 554
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 619
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 379, 420
BceAI ACGGC 7 cut(s) 109, 337, 349, 504, 601, 693, 710
BciT130I CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BciVI GTATCC 1 cut(s) 764
BcoDI GTCTC 1 cut(s) 231
BfmI CTRYAG 2 cut(s) 607, 672
BfoI RGCGCY 2 cut(s) 99, 214
BfuAI ACCTGC 1 cut(s) 37
BfuI GTATCC 1 cut(s) 764
BglI GCCNNNNNGGC 2 cut(s) 167, 261
BisI GCNGC 4 cut(s) 393, 409, 528, 594
BlsI GCNGC 4 cut(s) 394, 410, 529, 595
Bme1390I CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
Bme18I GGWCC 4 cut(s) 36, 52, 579, 653
BmgT120I GGNCC 4 cut(s) 36, 52, 579, 653
BmiI GGNNCC 6 cut(s) 97, 363, 556, 580, 592, 654
BmrFI CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
BpiI GAAGAC 1 cut(s) 619
BpmI CTGGAG 1 cut(s) 106
BsaHI GRCGYC 2 cut(s) 96, 377
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 566, 627
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 3 cut(s) 527, 730, 756
BseRI GAGGAG 3 cut(s) 122, 372, 700
BseXI GCAGC 2 cut(s) 379, 420
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 4 cut(s) 143, 152, 458, 658
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 5 cut(s) 113, 170, 189, 700, 708
BshNI GGYRCC 3 cut(s) 95, 361, 554
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 401
BsiSI CCGG 4 cut(s) 174, 567, 628, 697
BslFI GGGAC 2 cut(s) 86, 592
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 1 cut(s) 231
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 2 cut(s) 86, 592
BsnI GGCC 5 cut(s) 113, 170, 189, 700, 708
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 5 cut(s) 446, 493, 511, 637, 730
BspACI CCGC 9 cut(s) 386, 458, 517, 528, 558, 588, 594, 656, 669
BspANI GGCC 5 cut(s) 113, 170, 189, 700, 708
BspCNI CTCAG 3 cut(s) 528, 729, 755
BspFNI CGCG 4 cut(s) 143, 152, 458, 658
BspLI GGNNCC 6 cut(s) 97, 363, 556, 580, 592, 654
BspMAI CTGCAG 1 cut(s) 611
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 1 cut(s) 645
BspT107I GGYRCC 3 cut(s) 95, 361, 554
BsrBI CCGCTC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 5 cut(s) 446, 493, 511, 637, 730
BssNI GRCGYC 2 cut(s) 96, 377
Bst2UI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 2 cut(s) 96, 377
BstC8I GCNNGC 7 cut(s) 145, 209, 262, 390, 397, 553, 669
BstDEI CTNAG 3 cut(s) 536, 716, 742
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 4 cut(s) 143, 152, 458, 658
BstH2I RGCGCY 2 cut(s) 99, 214
BstHHI GCGC 4 cut(s) 98, 154, 213, 458
BstKTI GATC 5 cut(s) 449, 496, 514, 640, 733
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 5 cut(s) 446, 493, 511, 637, 730
BstMCI CGRYCG 1 cut(s) 571
BstNI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BstSCI CCNGG 6 cut(s) 54, 105, 113, 122, 161, 255
BstSFI CTRYAG 2 cut(s) 607, 672
BstUI CGCG 4 cut(s) 143, 152, 458, 658
BstV1I GCAGC 2 cut(s) 379, 420
BstV2I GAAGAC 1 cut(s) 619
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 637
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 5 cut(s) 113, 170, 189, 700, 708
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 286
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 7 cut(s) 145, 209, 262, 390, 397, 553, 669
CfoI GCGC 4 cut(s) 98, 154, 213, 458
Cfr13I GGNCC 4 cut(s) 36, 52, 579, 653
CseI GACGC 2 cut(s) 136, 385
DdeI CTNAG 3 cut(s) 536, 716, 742
DinI GGCGCC 1 cut(s) 97
DpnI GATC 5 cut(s) 448, 495, 513, 639, 732
DpnII GATC 5 cut(s) 446, 493, 511, 637, 730
EaeI YGGCCR 4 cut(s) 111, 187, 698, 706
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 3 cut(s) 375, 506, 603
Ecl136II GAGCTC 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 401
Eco47I GGWCC 4 cut(s) 36, 52, 579, 653
Eco47III AGCGCT 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 399
EcoRII CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
EcoT38I GRGCYC 1 cut(s) 401
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 231
FaiI YATR 5 cut(s) 192, 309, 438, 674, 766
FaqI GGGAC 2 cut(s) 86, 592
FauI CCCGC 1 cut(s) 676
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 4 cut(s) 393, 409, 528, 594
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 4 cut(s) 393, 409, 528, 594
GlaI GCGC 4 cut(s) 97, 153, 212, 457
GluI GCNGC 4 cut(s) 393, 409, 528, 594
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 2 cut(s) 99, 214
HaeIII GGCC 5 cut(s) 113, 170, 189, 700, 708
HapII CCGG 4 cut(s) 174, 567, 628, 697
HgaI GACGC 2 cut(s) 136, 385
HhaI GCGC 4 cut(s) 98, 154, 213, 458
Hin1I GRCGYC 2 cut(s) 96, 377
Hin6I GCGC 4 cut(s) 96, 152, 211, 456
HinP1I GCGC 4 cut(s) 96, 152, 211, 456
HincII GTYRAC 3 cut(s) 421, 604, 681
HindII GTYRAC 3 cut(s) 421, 604, 681
HinfI GANTC 4 cut(s) 47, 61, 299, 677
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 4 cut(s) 174, 567, 628, 697
HphI GGTGA 2 cut(s) 14, 554
Hpy166II GTNNAC 5 cut(s) 91, 421, 604, 681, 713
Hpy188I TCNGA 6 cut(s) 36, 52, 304, 493, 745, 762
Hpy188III TCNNGA 2 cut(s) 506, 734
Hpy8I GTNNAC 5 cut(s) 91, 421, 604, 681, 713
Hpy99I CGWCG 7 cut(s) 245, 323, 379, 416, 587, 685, 731
HpyAV CCTTC 3 cut(s) 160, 224, 627
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 1 cut(s) 609
HpyF3I CTNAG 3 cut(s) 536, 716, 742
Hsp92I GRCGYC 2 cut(s) 96, 377
HspAI GCGC 4 cut(s) 96, 152, 211, 456
KasI GGCGCC 1 cut(s) 95
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 5 cut(s) 446, 493, 511, 637, 730
LmnI GCTCC 2 cut(s) 135, 590
Lsp1109I GCAGC 2 cut(s) 379, 420
MaeIII GTNAC 1 cut(s) 20
MalI GATC 5 cut(s) 448, 495, 513, 639, 732
MbiI CCGCTC 1 cut(s) 530
MboI GATC 5 cut(s) 446, 493, 511, 637, 730
MboII GAAGA 4 cut(s) 16, 260, 488, 624
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 401
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 2 cut(s) 100, 562
MluI ACGCGT 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 113
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 2 cut(s) 293, 686
Mox20I TGGCCA 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 616
MscI TGGCCA 1 cut(s) 113
MseI TTAA 1 cut(s) 420
Msp20I TGGCCA 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 392, 551
MspI CCGG 4 cut(s) 174, 567, 628, 697
MspR9I CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
MvaI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
MvnI CGCG 4 cut(s) 143, 152, 458, 658
NarI GGCGCC 1 cut(s) 96
NdeII GATC 5 cut(s) 446, 493, 511, 637, 730
NlaIV GGNNCC 6 cut(s) 97, 363, 556, 580, 592, 654
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 20
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 300
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 47, 61
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 4 cut(s) 394, 410, 529, 595
PleI GAGTC 2 cut(s) 293, 685
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 2 cut(s) 293, 685
Psp124BI GAGCTC 1 cut(s) 401
Psp6I CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
PspN4I GGNNCC 6 cut(s) 97, 363, 556, 580, 592, 654
PspPI GGNCC 4 cut(s) 36, 52, 579, 653
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 637
PvuII CAGCTG 2 cut(s) 392, 551
SacI GAGCTC 1 cut(s) 401
SalI GTCGAC 1 cut(s) 679
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 4 cut(s) 393, 409, 528, 594
Sau3AI GATC 5 cut(s) 446, 493, 511, 637, 730
Sau96I GGNCC 4 cut(s) 36, 52, 579, 653
SchI GAGTC 2 cut(s) 293, 686
ScrFI CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
SduI GDGCHC 1 cut(s) 401
SfcI CTRYAG 2 cut(s) 607, 672
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 4 cut(s) 36, 52, 579, 653
Sse9I AATT 2 cut(s) 100, 562
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 9 cut(s) 386, 458, 517, 528, 558, 588, 594, 656, 669
SspDI GGCGCC 1 cut(s) 95
SstI GAGCTC 1 cut(s) 401
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 6 cut(s) 54, 105, 113, 122, 161, 255
TaaI ACNGT 1 cut(s) 431
TaqI TCGA 5 cut(s) 294, 374, 532, 680, 729
TaqII GACCGA 2 cut(s) 561, 596
TasI AATT 2 cut(s) 100, 562
TauI GCSGC 2 cut(s) 530, 596
TfiI GAWTC 2 cut(s) 47, 61
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 392, 408
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 17, 243
TspGWI ACGGA 3 cut(s) 190, 293, 360
VpaK11BI GGWCC 4 cut(s) 36, 52, 579, 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.