Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Forward (+)

2045154 .. 2047400

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAGAAGTGTGAGTTGTGTGACTCTGCGGCAAAGATGTACTGTGAATCAGATCAAGCTAGTTTATGTTGGGATTGTGACATCAAGGTTCATGGTGCAAACTTCTTGGTGGCCAAGCATTCAAGGACTCTGCTATGCCATGTCTGTCAATCTCTAACTCCATGGAATGCCTGTGGACCCAAGCTTGGTCCTAATACTGTTTCAGTTTGTGAGAATTGTGTTTCAAACAAGGAGTCCAGAAACGAAGAAGACGAAGAACGTGATGATGATGAAGATGGAGGAGAAAAAGAAGAAGAAGAAAATAGCATCGGAGAAGATAATGATGATCATGATGGAGGTGAAAATGGTGCTAATGATGATGATGGTGGTAATGCTGATGATGATGAAGGGAATCAAGTTGTTCCATGGTCATCTAGCTCCTCTACTCCACCAGACTCAAGCTCTTTAAGTGATGAAGAATGTTGCCATGAAAGCTTGTCAAGATCAAGATCATCATATCCATGTAAGCGCAGGCGCTACAATGCACACCAAGTTCGCGATTTCTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

184

Amino Acids

20.26

Weight (kDa)

4.37

Isoelectric Point (pI)

65.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 43	1.4e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	537
AciI	CCGC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	123, 225
AluBI	AGCT	5 cut(s)	59, 184, 417, 441, 474
AluI	AGCT	5 cut(s)	59, 184, 417, 441, 474
AoxI	GGCC	1 cut(s)	111
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	2 cut(s)	510, 516
AspS9I	GGNCC	2 cut(s)	176, 188
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	176, 188
BalI	TGGCCA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	255
BccI	CCATC	3 cut(s)	269, 326, 356
BclI	TGATCA	1 cut(s)	325
BfaI	CTAG	2 cut(s)	60, 414
BfoI	RGCGCY	1 cut(s)	517
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	176, 188
BmgT120I	GGNCC	2 cut(s)	176, 188
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	421
BsaBI	GATNNNNATC	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	161, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	161, 404
BseJI	GATNNNNATC	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseRI	GAGGAG	2 cut(s)	294, 409
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	2 cut(s)	118, 172
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	4 cut(s)	52, 325, 482, 488
Bsp19I	CCATGG	2 cut(s)	161, 404
Bsp68I	TCGCGA	1 cut(s)	537
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	161, 404
BssMI	GATC	4 cut(s)	52, 325, 482, 488
BssT1I	CCWWGG	2 cut(s)	161, 404
Bst4CI	ACNGT	2 cut(s)	44, 199
BstC8I	GCNNGC	1 cut(s)	512
BstDSI	CCRYGG	2 cut(s)	161, 404
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	2 cut(s)	510, 516
BstKTI	GATC	4 cut(s)	55, 328, 485, 491
BstMBI	GATC	4 cut(s)	52, 325, 482, 488
BstMWI	GCNNNNNNNGC	1 cut(s)	471
BstUI	CGCG	1 cut(s)	537
BstV2I	GAAGAC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	2 cut(s)	161, 404
BtuMI	TCGCGA	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	512
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	2 cut(s)	510, 516
Cfr13I	GGNCC	2 cut(s)	176, 188
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	7 cut(s)	92, 140, 162, 329, 405, 467, 501
CviJI	RGCY	6 cut(s)	59, 113, 184, 417, 441, 474
CviKI_1	RGCY	6 cut(s)	59, 113, 184, 417, 441, 474
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	4 cut(s)	54, 327, 484, 490
DpnII	GATC	4 cut(s)	52, 325, 482, 488
EaeI	YGGCCR	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	161, 404
Eco47I	GGWCC	2 cut(s)	176, 188
EcoT14I	CCWWGG	2 cut(s)	161, 404
ErhI	CCWWGG	2 cut(s)	161, 404
FaeI	CATG	7 cut(s)	95, 143, 165, 332, 408, 470, 504
FatI	CATG	7 cut(s)	91, 139, 161, 328, 404, 466, 500
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	2 cut(s)	60, 414
GlaI	GCGC	2 cut(s)	509, 515
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	517
HaeIII	GGCC	1 cut(s)	113
HhaI	GCGC	2 cut(s)	510, 516
Hin1II	CATG	7 cut(s)	95, 143, 165, 332, 408, 470, 504
Hin6I	GCGC	2 cut(s)	508, 514
HinP1I	GCGC	2 cut(s)	508, 514
HindIII	AAGCTT	2 cut(s)	182, 472
HinfI	GANTC	6 cut(s)	23, 47, 127, 233, 391, 434
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	52, 311
Hpy188III	TCNNGA	5 cut(s)	237, 329, 480, 486, 536
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	2 cut(s)	44, 199
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	2 cut(s)	98, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	7 cut(s)	95, 143, 165, 332, 408, 470, 504
HspAI	GCGC	2 cut(s)	508, 514
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	52, 325, 482, 488
LmnI	GCTCC	1 cut(s)	422
LpnPI	CCDG	4 cut(s)	184, 250, 444, 496
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	2 cut(s)	60, 414
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	2 cut(s)	20, 77
MalI	GATC	4 cut(s)	54, 327, 484, 490
MboI	GATC	4 cut(s)	52, 325, 482, 488
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	1 cut(s)	214
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	4 cut(s)	17, 121, 242, 428
MnlI	CCTC	3 cut(s)	272, 329, 430
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	499
Msp20I	TGGCCA	1 cut(s)	113
Mva1269I	GAATGC	2 cut(s)	118, 172
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	471
NcoI	CCATGG	2 cut(s)	161, 404
NdeII	GATC	4 cut(s)	52, 325, 482, 488
NlaIII	CATG	7 cut(s)	95, 143, 165, 332, 408, 470, 504
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	2 cut(s)	20, 77
NruI	TCGCGA	1 cut(s)	537
PagI	TCATGA	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	2 cut(s)	118, 172
PfeI	GAWTC	2 cut(s)	47, 391
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	4 cut(s)	17, 121, 241, 428
PpsI	GAGTC	4 cut(s)	17, 121, 241, 428
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	176, 188
RruI	TCGCGA	1 cut(s)	537
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	4 cut(s)	52, 325, 482, 488
Sau96I	GGNCC	2 cut(s)	176, 188
SchI	GAGTC	4 cut(s)	17, 121, 242, 428
SetI	ASST	8 cut(s)	61, 90, 186, 262, 340, 419, 443, 476
SfaNI	GCATC	1 cut(s)	315
SinI	GGWCC	2 cut(s)	176, 188
SmiMI	CAYNNNNRTG	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	2 cut(s)	60, 414
StyI	CCWWGG	2 cut(s)	161, 404
TaaI	ACNGT	2 cut(s)	44, 199
TaiI	ACGT	1 cut(s)	262
TasI	AATT	1 cut(s)	214
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	47, 391
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TseFI	GTSAC	2 cut(s)	20, 77
Tsp45I	GTSAC	2 cut(s)	20, 77
TspDTI	ATGAA	7 cut(s)	17, 80, 285, 399, 468, 483, 535
VpaK11BI	GGWCC	2 cut(s)	176, 188
XspI	CTAG	2 cut(s)	60, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.