Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Forward (+)

63509242 .. 63510625

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAAGAGTGCGAACTGTGTGGAGTGAGAGCTCGGATGTACTGCGAGGCGGACCGAGCGAGTTTATGCTGGGACTGTGACGAGAAAGTTCACGGAGCTAACTTTCTGGTGGCGAAGCATGCGAGAGTTCTTCTCTGCCATGTGTGCCAGTCGCAGACGCCGTGGACGAGTTGCGGAGCCAAGCTGACGCCGACGGTGTCGGTCTGCCAGAGTTGCGTTGGAAGCTGTAGTAAGATTGACCTGAACGAGGAGCAAGAAAGCGAGGCAGAGAATGAAGAAGAAGAAGAAGAAGAAGATTATTATGATGATGAAGATGAAGAAGATGATGACGTTGAGGATGAGAACCAGGTGGTTCCATGGTCAGGCTGTTCTTACTCGCCGGCACAGCTTCCACCAGCAGTGAGTGGTTCGGATAGTGAAGCCGAGATTTCGGTGTCGAAGCGACAGCGTGAGAATGTAGATGTGGATTATTCTGATGATGAGGTAGGGTTTGATGGGACGTCGTCGTTTGGTGGTTCAATGAGACCGTTGAAAAGGCCGAAAGTGGGTGAAGAGAAGAATGGTGACGGAGATGATGGCGGTGAATCGGAGTGGAGAGCAACGGCGATCATGAGCTCAATTCAGAGGATGGAAAAGGAAGTGATCGACGGCGCTGGTAATGCGTCCACCGCGGTTCTTAGGATTTGCAAACTCAGTAGAGATGAGAGCAGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

238

Amino Acids

26.2

Weight (kDa)

4.27

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 43	4.2e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	503
AccII	CGCG	1 cut(s)	671
AciI	CCGC	5 cut(s)	50, 174, 579, 669, 671
AcyI	GRCGYC	3 cut(s)	158, 188, 500
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	247, 362, 545
AgsI	TTSAA	2 cut(s)	519, 532
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	6 cut(s)	32, 98, 184, 225, 388, 615
AluI	AGCT	6 cut(s)	32, 98, 184, 225, 388, 615
Alw21I	GWGCWC	2 cut(s)	34, 617
Alw26I	GTCTC	1 cut(s)	517
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	1 cut(s)	708
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	3 cut(s)	560, 575, 593
AvaII	GGWCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	34, 617
Bbv12I	GWGCWC	2 cut(s)	34, 617
BccI	CCATC	3 cut(s)	488, 569, 622
BceAI	ACGGC	3 cut(s)	145, 618, 664
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	517
BfmI	CTRYAG	1 cut(s)	226
BfoI	RGCGCY	1 cut(s)	654
BisI	GCNGC	1 cut(s)	709
BlsI	GCNGC	1 cut(s)	710
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	178, 354
BmrFI	CCNGG	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BsaHI	GRCGYC	3 cut(s)	158, 188, 500
BsaI	GGTCTC	1 cut(s)	517
BsaJI	CCNNGG	3 cut(s)	161, 356, 669
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 362, 545
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	161, 356, 669
BseGI	GGATG	3 cut(s)	42, 343, 633
BseLI	CCNNNNNNNGG	3 cut(s)	247, 362, 545
BseMII	CTCAG	1 cut(s)	706
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	671
BshFI	GGCC	1 cut(s)	538
BsiHKAI	GWGCWC	2 cut(s)	34, 617
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	86, 511
BslI	CCNNNNNNNGG	3 cut(s)	247, 362, 545
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	2 cut(s)	86, 511
BsnI	GGCC	1 cut(s)	538
Bso31I	GGTCTC	1 cut(s)	517
Bsp1286I	GDGCHC	2 cut(s)	34, 617
Bsp143I	GATC	2 cut(s)	606, 642
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	5 cut(s)	50, 174, 579, 669, 671
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	1 cut(s)	705
BspFNI	CGCG	1 cut(s)	671
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	2 cut(s)	178, 354
BspTNI	GGTCTC	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	379
BssECI	CCNNGG	3 cut(s)	161, 356, 669
BssMI	GATC	2 cut(s)	606, 642
BssNI	GRCGYC	3 cut(s)	158, 188, 500
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	4 cut(s)	18, 77, 196, 528
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	3 cut(s)	158, 188, 500
BstC8I	GCNNGC	2 cut(s)	120, 381
BstDEI	CTNAG	2 cut(s)	677, 692
BstDSI	CCRYGG	3 cut(s)	161, 356, 669
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	42, 343, 633
BstFNI	CGCG	1 cut(s)	671
BstH2I	RGCGCY	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	2 cut(s)	609, 645
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	2 cut(s)	606, 642
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 119, 144, 213, 222, 385, 659, 668
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	671
BsuRI	GGCC	1 cut(s)	538
BtgI	CCRYGG	3 cut(s)	161, 356, 669
BtsCI	GGATG	3 cut(s)	42, 343, 633
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	120, 381
CciI	TCATGA	1 cut(s)	609
CfoI	GCGC	1 cut(s)	653
Cfr10I	RCCGGY	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	52
Cfr42I	CCGCGG	1 cut(s)	672
CpoI	CGGWCCG	1 cut(s)	52
CseI	GACGC	3 cut(s)	166, 196, 651
CsiI	ACCWGGT	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	40
CspI	CGGWCCG	1 cut(s)	52
CviAII	CATG	4 cut(s)	119, 140, 357, 610
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	677, 692
DpnI	GATC	2 cut(s)	608, 644
DpnII	GATC	2 cut(s)	606, 642
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	32, 615
Eco130I	CCWWGG	1 cut(s)	356
Eco24I	GRGCYC	2 cut(s)	34, 617
Eco31I	GGTCTC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	32, 615
EcoICRI	GAGCTC	2 cut(s)	32, 615
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	356
EcoT38I	GRGCYC	2 cut(s)	34, 617
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	4 cut(s)	122, 143, 360, 613
FaiI	YATR	6 cut(s)	67, 120, 141, 303, 358, 611
FaqI	GGGAC	2 cut(s)	86, 511
FatI	CATG	4 cut(s)	118, 139, 356, 609
Fnu4HI	GCNGC	1 cut(s)	709
FokI	GGATG	3 cut(s)	49, 350, 640
FriOI	GRGCYC	2 cut(s)	34, 617
Fsp4HI	GCNGC	1 cut(s)	709
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	1 cut(s)	709
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	654
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	3 cut(s)	166, 196, 651
HhaI	GCGC	1 cut(s)	653
Hin1I	GRCGYC	3 cut(s)	158, 188, 500
Hin1II	CATG	4 cut(s)	122, 143, 360, 613
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	1 cut(s)	584
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	3 cut(s)	560, 575, 593
Hpy166II	GTNNAC	3 cut(s)	91, 165, 666
Hpy188I	TCNGA	5 cut(s)	36, 412, 475, 589, 624
Hpy188III	TCNNGA	1 cut(s)	610
Hpy8I	GTNNAC	3 cut(s)	91, 165, 666
Hpy99I	CGWCG	4 cut(s)	196, 505, 508, 650
HpyCH4III	ACNGT	4 cut(s)	18, 77, 196, 528
HpyCH4IV	ACGT	2 cut(s)	330, 500
HpyCH4V	TGCA	1 cut(s)	687
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 119, 144, 213, 222, 385, 659, 668
HpyF3I	CTNAG	2 cut(s)	677, 692
HpySE526I	ACGT	2 cut(s)	330, 500
Hsp92I	GRCGYC	3 cut(s)	158, 188, 500
Hsp92II	CATG	4 cut(s)	122, 143, 360, 613
HspAI	GCGC	1 cut(s)	651
KroI	GCCGGC	1 cut(s)	379
KroNI	GCCGGC	1 cut(s)	381
KspI	CCGCGG	1 cut(s)	672
Kzo9I	GATC	2 cut(s)	606, 642
LmnI	GCTCC	3 cut(s)	95, 176, 250
MabI	ACCWGGT	1 cut(s)	345
MaeII	ACGT	2 cut(s)	330, 500
MaeIII	GTNAC	2 cut(s)	77, 563
MalI	GATC	2 cut(s)	608, 644
MboI	GATC	2 cut(s)	606, 642
MhlI	GDGCHC	2 cut(s)	34, 617
MluCI	AATT	1 cut(s)	618
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	40, 241, 256, 328, 475, 618
MroNI	GCCGGC	1 cut(s)	379
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	671
MwoI	GCNNNNNNNGC	8 cut(s)	56, 119, 144, 213, 222, 385, 659, 668
NaeI	GCCGGC	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	606, 642
NgoMIV	GCCGGC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	122, 143, 360, 613
NlaIV	GGNNCC	2 cut(s)	178, 354
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	77, 563
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PagI	TCATGA	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 164
PdiI	GCCGGC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	584
PflFI	GACNNNGTC	2 cut(s)	196, 502
PkrI	GCNGC	1 cut(s)	710
Psp124BI	GAGCTC	2 cut(s)	34, 617
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	178, 354
PspPI	GGNCC	1 cut(s)	52
PsyI	GACNNNGTC	2 cut(s)	196, 502
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
Rsr2I	CGGWCCG	1 cut(s)	52
RsrII	CGGWCCG	1 cut(s)	52
SacI	GAGCTC	2 cut(s)	34, 617
SacII	CCGCGG	1 cut(s)	672
SatI	GCNGC	1 cut(s)	709
Sau3AI	GATC	2 cut(s)	606, 642
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	34, 617
SexAI	ACCWGGT	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	226
Sfr303I	CCGCGG	1 cut(s)	672
SgrBI	CCGCGG	1 cut(s)	672
SinI	GGWCC	1 cut(s)	52
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	1 cut(s)	618
SsiI	CCGC	5 cut(s)	50, 174, 579, 669, 671
SstI	GAGCTC	2 cut(s)	34, 617
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	4 cut(s)	18, 77, 196, 528
TaiI	ACGT	2 cut(s)	333, 503
TaqI	TCGA	2 cut(s)	437, 645
TaqII	GACCGA	2 cut(s)	69, 190
TasI	AATT	1 cut(s)	618
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	584
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	2 cut(s)	77, 563
TseI	GCWGC	1 cut(s)	708
Tsp45I	GTSAC	2 cut(s)	77, 563
TspDTI	ATGAA	4 cut(s)	17, 288, 324, 330
TspGWI	ACGGA	2 cut(s)	108, 582
TspRI	CASTG	1 cut(s)	405
Tth111I	GACNNNGTC	2 cut(s)	196, 502
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	245
XceI	RCATGY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
ZraI	GACGTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.