Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

22114304 .. 22115539

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGGAAGAAGAAGTGCGAGTTATGTTGTGGTGTAGCGAGAATGTATTGTGAGTCAGATCAAGCGAGTTTATGTTGGGATTGTGACGGTAAAGTTCACGGAGCTAATTTTCTGGTGGCGAAACACATGCGTTGTCTTCTATGTAGCGCGTGTCAGTCACACACGCCTTGGAAAGCTTCTGGGCTGAATCTTGGCCCAACTGTTTCTATCTGTGAGTCTTGTTTAGCTCGTAAGAAGAATAACAACAGCTCCCTCGCCGGGAGGGATCAGAATCTTAACCAAGAAGAAGAGATCATTGGTTGTAACGACGGAGCTGAGTCTTATGATGAGGAAAGCGATGAGGATGAAGAAGAAGAAGAAGTGGAGAATCAGGTTGTTCCGGCTGCGGTGGAGCAAGAACTTCCGGTGGTGAGTTCGTCGTCTTCGGTTAGTAGTGGTGAAGGAGATCAGGTGGTGAAAAGGACGAGACTTGATTTGGATCTTAACCTCTCCGATGAGGAGAACCAATCTAGACCATTGAAAAGATTATCGAGAGACGAAGGTTTGTCAAGATCAACTGTTGTGATGAATAGCTCAATCGTGAAATTACACGGAGGGAGGAGAAAAGCAGAGGGATGTGATACATCATCGTCGTCTTCGTTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

215

Amino Acids

23.48

Weight (kDa)

4.8

Isoelectric Point (pI)

62.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	149
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	2 cut(s)	273, 486
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	520
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	6 cut(s)	104, 176, 227, 249, 314, 573
AluI	AGCT	6 cut(s)	104, 176, 227, 249, 314, 573
Alw26I	GTCTC	2 cut(s)	460, 528
AlwI	GGATC	2 cut(s)	273, 486
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	421, 449, 466
BbsI	GAAGAC	3 cut(s)	128, 414, 627
BbvI	GCAGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	460, 528
BfaI	CTAG	1 cut(s)	510
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	259
BpiI	GAAGAC	3 cut(s)	128, 414, 627
BpuMI	CCSGG	1 cut(s)	259
BsaBI	GATNNNNATC	2 cut(s)	270, 477
BsaJI	CCNNGG	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 435, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse8I	GATNNNNATC	2 cut(s)	270, 477
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	349, 620
BseJI	GATNNNNATC	2 cut(s)	270, 477
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	512, 613
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	258, 380, 404
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	460, 528
BsmBI	CGTCTC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	6 cut(s)	58, 265, 291, 445, 478, 551
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	149
BspPI	GGATC	2 cut(s)	273, 486
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	6 cut(s)	58, 265, 291, 445, 478, 551
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	3 cut(s)	89, 202, 559
Bst6I	CTCTTC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	349, 620
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	6 cut(s)	61, 268, 294, 448, 481, 554
BstMAI	GTCTC	2 cut(s)	460, 528
BstMBI	GATC	6 cut(s)	58, 265, 291, 445, 478, 551
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	257
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	3 cut(s)	128, 414, 627
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	349, 620
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	9 cut(s)	104, 176, 184, 195, 227, 249, 314, 383, 573
CviKI_1	RGCY	9 cut(s)	104, 176, 184, 195, 227, 249, 314, 383, 573
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	6 cut(s)	60, 267, 293, 447, 480, 553
DpnII	GATC	6 cut(s)	58, 265, 291, 445, 478, 551
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	528
FaeI	CATG	1 cut(s)	130
FaiI	YATR	5 cut(s)	25, 73, 128, 142, 324
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	2 cut(s)	356, 627
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	3 cut(s)	258, 380, 404
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	6 cut(s)	53, 187, 215, 271, 317, 367
HpaII	CCGG	3 cut(s)	258, 380, 404
HphI	GGTGA	3 cut(s)	421, 449, 466
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	58, 270, 493
Hpy188III	TCNNGA	4 cut(s)	510, 531, 549, 580
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	3 cut(s)	311, 421, 634
HpyAV	CCTTC	2 cut(s)	434, 533
HpyCH4III	ACNGT	3 cut(s)	89, 202, 559
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	6 cut(s)	58, 265, 291, 445, 478, 551
LmnI	GCTCC	4 cut(s)	101, 254, 311, 391
LpnPI	CCDG	7 cut(s)	98, 165, 271, 356, 393, 417, 434
Lsp1109I	GCAGC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	510
MaeIII	GTNAC	3 cut(s)	83, 156, 302
MalI	GATC	6 cut(s)	60, 267, 293, 447, 480, 553
MboI	GATC	6 cut(s)	58, 265, 291, 445, 478, 551
MflI	RGATCY	1 cut(s)	478
MluCI	AATT	2 cut(s)	106, 584
MlyI	GAGTC	3 cut(s)	62, 224, 326
MnlI	CCTC	9 cut(s)	255, 263, 322, 334, 490, 497, 587, 591, 604
MseI	TTAA	2 cut(s)	276, 483
MspI	CCGG	3 cut(s)	258, 380, 404
MspR9I	CCNGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	149
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	6 cut(s)	58, 265, 291, 445, 478, 551
NlaIII	CATG	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	83, 156
NspI	RCATGY	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	635
PfeI	GAWTC	3 cut(s)	187, 271, 367
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	3 cut(s)	61, 223, 325
PpsI	GAGTC	3 cut(s)	61, 223, 325
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	478
SaqAI	TTAA	2 cut(s)	276, 483
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	6 cut(s)	58, 265, 291, 445, 478, 551
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	3 cut(s)	62, 224, 326
ScrFI	CCNGG	1 cut(s)	259
Sse9I	AATT	2 cut(s)	106, 584
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	89, 202, 559
TaqI	TCGA	1 cut(s)	530
TasI	AATT	2 cut(s)	106, 584
TfiI	GAWTC	3 cut(s)	187, 271, 367
Tru1I	TTAA	2 cut(s)	276, 483
Tru9I	TTAA	2 cut(s)	276, 483
TseFI	GTSAC	2 cut(s)	83, 156
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	2 cut(s)	83, 156
TspDTI	ATGAA	2 cut(s)	360, 581
TspGWI	ACGGA	3 cut(s)	114, 324, 606
XbaI	TCTAGA	1 cut(s)	509
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.