Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

11597386 .. 11600453

Gene Structure 3068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G192700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGAGAGTGCGAGCTGTGTGGACTGAGAGCTCGGATTCACTGCGAGGCGGACCAGGCGAAGTTATGCTGGGACTGCGATGAGAAAGTTCACGGAGCCAATTTTCTGGTGGCGAAGCACCCGAGGAACCTCCTCTGCCATGGATGCCAGTTGCCGACTCCATGGATGGGCTCGGGACCCAAGCTTACGCCGACCGTCTCGGTATGTGAGATTTGTGTCGAAAGGCGTGGAATTAAGTTTCAGCGGTACGAGGATCAAGAAAGCGAAGCAGAGAACGAAGACGATGTTGATCTTGATGATGAGGAGGATGATGATGATGGTGGTCATGATGGTGAAGATGTTGATGATGATGCTGATGATGATGATGATGATGAGGATGAAAATCAGGTGGTTCCGTGGTCTAGTTCGCATTCGGCGGCGGCAGAGCCTCCGCCTGCGGTGAGTTGTTCGAGTAGTGAAGAAGAAGAAGAGGAGGAGGAATTTTTGGTGGTGTCGAAGCGAATGCGAGAGAATGCGGATCCAGATTCTGATTTGGGATGCGACGAAACGTCGTCGTTGGCTTCGCTGAGGCTGTTGAAGCGAGCCAGACCGGGCGAAGAGAACCGTTTACTGAGTGAGAGATCAAGTGAAGCGGAGTTAAGATCAACGGCGATCGTGAGCTCAATTGAGAGTCTTCAAAATCAAACGGACGTGATCAGCGACGGTGATGATCAGGCGTCCGCCGCGGTCCTCGGGATTTGCGAACCCAGAAGAGATGTACTAGTTGCGGATATTGTGTTCTTGCGAGGAACATTCATACATGATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

270

Amino Acids

29.77

Weight (kDa)

4.17

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	725
AclWI	GGATC	3 cut(s)	261, 512, 525
AcsI	RAATTY	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	2 cut(s)	248, 759
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	577, 677
AhdI	GACNNNNNGTC	1 cut(s)	547
AhlI	ACTAGT	1 cut(s)	760
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	54
AloI	GAACNNNNNNTCC	2 cut(s)	761, 793
AluBI	AGCT	4 cut(s)	16, 32, 184, 660
AluI	AGCT	4 cut(s)	16, 32, 184, 660
Alw21I	GWGCWC	2 cut(s)	34, 662
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	3 cut(s)	261, 512, 525
AlwNI	CAGNNNCTG	1 cut(s)	527
Ama87I	CYCGRG	3 cut(s)	121, 172, 731
ApoI	RAATTY	1 cut(s)	479
AspS9I	GGNCC	3 cut(s)	52, 176, 727
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	3 cut(s)	344, 451, 716
AvaI	CYCGRG	3 cut(s)	121, 172, 731
AvaII	GGWCC	3 cut(s)	52, 176, 727
BamHI	GGATCC	1 cut(s)	517
BanII	GRGCYC	3 cut(s)	34, 173, 662
BbsI	GAAGAC	2 cut(s)	285, 665
Bbv12I	GWGCWC	2 cut(s)	34, 662
BbvCI	CCTCAGC	1 cut(s)	566
BccI	CCATC	3 cut(s)	160, 311, 323
BceAI	ACGGC	1 cut(s)	663
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BciT130I	CCWGG	1 cut(s)	56
BclI	TGATCA	2 cut(s)	693, 709
BcnI	CCSGG	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	202
BcuI	ACTAGT	1 cut(s)	760
BfaI	CTAG	2 cut(s)	402, 761
BisI	GCNGC	3 cut(s)	417, 420, 723
BlsI	GCNGC	3 cut(s)	418, 421, 724
Bme1390I	CCNGG	2 cut(s)	56, 591
Bme18I	GGWCC	3 cut(s)	52, 176, 727
BmeRI	GACNNNNNGTC	1 cut(s)	547
BmeT110I	CYCGRG	3 cut(s)	121, 172, 731
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	3 cut(s)	52, 176, 727
BmiI	GGNNCC	6 cut(s)	97, 128, 177, 178, 393, 519
BmrFI	CCNGG	2 cut(s)	56, 591
BmsI	GCATC	4 cut(s)	134, 340, 527, 793
BpiI	GAAGAC	2 cut(s)	285, 665
Bpu10I	CCTNAGC	1 cut(s)	566
BpuMI	CCSGG	1 cut(s)	591
BsaBI	GATNNNNATC	2 cut(s)	288, 381
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	6 cut(s)	122, 139, 161, 395, 723, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	148
Bse8I	GATNNNNATC	2 cut(s)	288, 381
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	6 cut(s)	122, 139, 161, 395, 723, 730
BseGI	GGATG	5 cut(s)	149, 171, 313, 382, 542
BseJI	GATNNNNATC	2 cut(s)	288, 381
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	3 cut(s)	17, 557, 602
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	4 cut(s)	122, 317, 485, 488
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	725
Bsh1285I	CGRYCG	2 cut(s)	195, 654
BsiEI	CGRYCG	2 cut(s)	195, 654
BsiHKAI	GWGCWC	2 cut(s)	34, 662
BsiHKCI	CYCGRG	3 cut(s)	121, 172, 731
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	2 cut(s)	86, 189
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	202
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	86, 189
BsmI	GAATGC	3 cut(s)	409, 507, 517
BsoBI	CYCGRG	3 cut(s)	121, 172, 731
Bsp1286I	GDGCHC	3 cut(s)	34, 173, 662
Bsp143I	GATC	8 cut(s)	253, 289, 517, 620, 641, 651, 693, 709
Bsp19I	CCATGG	2 cut(s)	139, 161
BspCNI	CTCAG	3 cut(s)	18, 558, 603
BspFNI	CGCG	1 cut(s)	725
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	6 cut(s)	97, 128, 177, 178, 393, 519
BspPI	GGATC	3 cut(s)	261, 512, 525
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	6 cut(s)	122, 139, 161, 395, 723, 730
BssMI	GATC	8 cut(s)	253, 289, 517, 620, 641, 651, 693, 709
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	2 cut(s)	139, 161
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	3 cut(s)	196, 605, 704
Bst6I	CTCTTC	3 cut(s)	462, 591, 745
BstACI	GRCGYC	1 cut(s)	716
BstC8I	GCNNGC	3 cut(s)	14, 435, 582
BstDEI	CTNAG	3 cut(s)	26, 566, 611
BstDSI	CCRYGG	4 cut(s)	139, 161, 395, 723
BstF5I	GGATG	5 cut(s)	149, 171, 313, 382, 542
BstFNI	CGCG	1 cut(s)	725
BstKTI	GATC	8 cut(s)	256, 292, 520, 623, 644, 654, 696, 712
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	8 cut(s)	253, 289, 517, 620, 641, 651, 693, 709
BstMCI	CGRYCG	2 cut(s)	195, 654
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 75, 144, 577, 722
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	54, 589
BstUI	CGCG	1 cut(s)	725
BstV2I	GAAGAC	2 cut(s)	285, 665
BstX2I	RGATCY	1 cut(s)	517
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	517
BtgI	CCRYGG	4 cut(s)	139, 161, 395, 723
BtgZI	GCGATG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	5 cut(s)	149, 171, 313, 382, 542
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	14, 435, 582
CaiI	CAGNNNCTG	1 cut(s)	527
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	3 cut(s)	52, 176, 727
Cfr42I	CCGCGG	1 cut(s)	726
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	2 cut(s)	247, 758
CviAII	CATG	4 cut(s)	140, 162, 326, 800
CviQI	GTAC	2 cut(s)	247, 758
DdeI	CTNAG	3 cut(s)	26, 566, 611
DpnI	GATC	8 cut(s)	255, 291, 519, 622, 643, 653, 695, 711
DpnII	GATC	8 cut(s)	253, 289, 517, 620, 641, 651, 693, 709
DriI	GACNNNNNGTC	1 cut(s)	547
Eam1104I	CTCTTC	3 cut(s)	462, 591, 745
Eam1105I	GACNNNNNGTC	1 cut(s)	547
EarI	CTCTTC	3 cut(s)	462, 591, 745
EciI	GGCGGA	3 cut(s)	65, 420, 709
Ecl136II	GAGCTC	2 cut(s)	32, 660
Eco130I	CCWWGG	2 cut(s)	139, 161
Eco24I	GRGCYC	3 cut(s)	34, 173, 662
Eco47I	GGWCC	3 cut(s)	52, 176, 727
Eco53kI	GAGCTC	2 cut(s)	32, 660
Eco88I	CYCGRG	3 cut(s)	121, 172, 731
EcoICRI	GAGCTC	2 cut(s)	32, 660
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	139, 161
EcoT38I	GRGCYC	3 cut(s)	34, 173, 662
ErhI	CCWWGG	2 cut(s)	139, 161
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	4 cut(s)	143, 165, 329, 803
FaiI	YATR	7 cut(s)	67, 141, 163, 205, 327, 797, 801
FaqI	GGGAC	2 cut(s)	86, 189
FatI	CATG	4 cut(s)	139, 161, 325, 799
FbaI	TGATCA	2 cut(s)	693, 709
Fnu4HI	GCNGC	3 cut(s)	417, 420, 723
FokI	GGATG	5 cut(s)	156, 178, 320, 389, 549
FriOI	GRGCYC	3 cut(s)	34, 173, 662
Fsp4HI	GCNGC	3 cut(s)	417, 420, 723
FspBI	CTAG	2 cut(s)	402, 761
GluI	GCNGC	3 cut(s)	417, 420, 723
GsaI	CCCAGC	1 cut(s)	73
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	1 cut(s)	705
Hin1I	GRCGYC	1 cut(s)	716
Hin1II	CATG	4 cut(s)	143, 165, 329, 803
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	4 cut(s)	37, 157, 524, 670
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	3 cut(s)	344, 451, 716
Hpy166II	GTNNAC	3 cut(s)	23, 91, 608
Hpy188I	TCNGA	2 cut(s)	36, 529
Hpy188III	TCNNGA	7 cut(s)	174, 257, 293, 326, 521, 655, 733
Hpy8I	GTNNAC	3 cut(s)	23, 91, 608
Hpy99I	CGWCG	4 cut(s)	545, 553, 556, 704
HpyCH4III	ACNGT	3 cut(s)	196, 605, 704
HpyCH4IV	ACGT	2 cut(s)	548, 690
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 75, 144, 577, 722
HpyF3I	CTNAG	3 cut(s)	26, 566, 611
HpySE526I	ACGT	2 cut(s)	548, 690
Hsp92I	GRCGYC	1 cut(s)	716
Hsp92II	CATG	4 cut(s)	143, 165, 329, 803
KflI	GGGWCCC	1 cut(s)	176
Ksp22I	TGATCA	2 cut(s)	693, 709
KspI	CCGCGG	1 cut(s)	726
Kzo9I	GATC	8 cut(s)	253, 289, 517, 620, 641, 651, 693, 709
LmnI	GCTCC	1 cut(s)	95
LweI	GCATC	4 cut(s)	134, 340, 527, 793
MaeI	CTAG	2 cut(s)	402, 761
MaeII	ACGT	2 cut(s)	548, 690
MalI	GATC	8 cut(s)	255, 291, 519, 622, 643, 653, 695, 711
MboI	GATC	8 cut(s)	253, 289, 517, 620, 641, 651, 693, 709
MboII	GAAGA	9 cut(s)	290, 347, 470, 473, 476, 479, 608, 665, 762
MfeI	CAATTG	1 cut(s)	663
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	3 cut(s)	34, 173, 662
MluCI	AATT	4 cut(s)	100, 231, 479, 663
MlyI	GAGTC	2 cut(s)	151, 679
MseI	TTAA	2 cut(s)	234, 638
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	2 cut(s)	244, 725
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	56, 591
MunI	CAATTG	1 cut(s)	663
Mva1269I	GAATGC	3 cut(s)	409, 507, 517
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	5 cut(s)	56, 75, 144, 577, 722
NciI	CCSGG	1 cut(s)	591
NcoI	CCATGG	2 cut(s)	139, 161
NdeII	GATC	8 cut(s)	253, 289, 517, 620, 641, 651, 693, 709
NlaIII	CATG	4 cut(s)	143, 165, 329, 803
NlaIV	GGNNCC	6 cut(s)	97, 128, 177, 178, 393, 519
PagI	TCATGA	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	2 cut(s)	696, 738
PctI	GAATGC	3 cut(s)	409, 507, 517
PfeI	GAWTC	2 cut(s)	37, 524
PkrI	GCNGC	3 cut(s)	418, 421, 724
Ple19I	CGATCG	1 cut(s)	654
PleI	GAGTC	2 cut(s)	151, 678
PpsI	GAGTC	2 cut(s)	151, 678
PpuMI	RGGWCCY	1 cut(s)	176
Psp124BI	GAGCTC	2 cut(s)	34, 662
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	6 cut(s)	97, 128, 177, 178, 393, 519
PspPI	GGNCC	3 cut(s)	52, 176, 727
PspPPI	RGGWCCY	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	517
PvuI	CGATCG	1 cut(s)	654
RsaI	GTAC	2 cut(s)	248, 759
RsaNI	GTAC	2 cut(s)	247, 758
RseI	CAYNNNNRTG	1 cut(s)	330
SacI	GAGCTC	2 cut(s)	34, 662
SacII	CCGCGG	1 cut(s)	726
SaqAI	TTAA	2 cut(s)	234, 638
SatI	GCNGC	3 cut(s)	417, 420, 723
Sau3AI	GATC	8 cut(s)	253, 289, 517, 620, 641, 651, 693, 709
Sau96I	GGNCC	3 cut(s)	52, 176, 727
SchI	GAGTC	2 cut(s)	151, 679
ScrFI	CCNGG	2 cut(s)	56, 591
SduI	GDGCHC	3 cut(s)	34, 173, 662
SetI	ASST	8 cut(s)	18, 34, 132, 186, 390, 551, 662, 693
SfaNI	GCATC	4 cut(s)	134, 340, 527, 793
Sfr303I	CCGCGG	1 cut(s)	726
SgrBI	CCGCGG	1 cut(s)	726
SinI	GGWCC	3 cut(s)	52, 176, 727
SmiMI	CAYNNNNRTG	1 cut(s)	330
SpeI	ACTAGT	1 cut(s)	760
Sse9I	AATT	4 cut(s)	100, 231, 479, 663
SspMI	CTAG	2 cut(s)	402, 761
SstI	GAGCTC	2 cut(s)	34, 662
StyD4I	CCNGG	2 cut(s)	54, 589
StyI	CCWWGG	2 cut(s)	139, 161
TaaI	ACNGT	3 cut(s)	196, 605, 704
TaiI	ACGT	2 cut(s)	551, 693
TaqI	TCGA	3 cut(s)	219, 449, 494
TasI	AATT	4 cut(s)	100, 231, 479, 663
TatI	WGTACW	1 cut(s)	757
TauI	GCSGC	3 cut(s)	419, 422, 725
TfiI	GAWTC	2 cut(s)	37, 524
Tru1I	TTAA	2 cut(s)	234, 638
Tru9I	TTAA	2 cut(s)	234, 638
TscAI	CASTG	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	393, 784
TspGWI	ACGGA	3 cut(s)	108, 384, 701
TspRI	CASTG	1 cut(s)	47
VpaK11BI	GGWCC	3 cut(s)	52, 176, 727
XapI	RAATTY	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	2 cut(s)	402, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.