RchiOBHm_Chr2g0161131

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001915
Physical Location & Seq
Forward (+)
77046178 .. 77048047
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52949

Sequence Viewer

Length: 768 bp
ATGAAGAACTGCGAGCTTTGTCACCTAACTGCGCGGACCTACTGCGAATCGGACCAGGCGATTCTCTGCTGGGACTGCGATTTCAAGGTTCACGGCGCCAATTTCCTGGTGGCCAGGCACTCCAGGACGCTCCTCTGCCACGCGTGCCACGCGCCGACTGCCTGGAAGGCCTCCGGCGAGAAACTCGGCCATACTTTTTCCGTTTGCGAGCGCTGTGTGGCGAGAAATGAAAGCAGAGACGACGAGGAAGAGAGCCAGGCTGGCAATGATGATGCTACGGATGATGACGACCTCGATGACTCCGATTACGATGATGACGACGGCGATATTGATTTTGATGAGGACGGAGATAATCAGGTGGTGCCGTGGGGTTCGACGCCTCCTCCGCCAGCTGCGAGCTCTACCAGCAGCGACGAGGTTAACAATGACGGTAGATATGGTCGCCGATCATTCGGCGTGGTTTCGTTGAAGCGAACCAGAGATAATGCTTCCGATCTTCGCTCTCTGGACGATCTCCGCCGTTTAGCCGCCCGACTGAGGGGTGAAACAGCTGGCACCGCCCATTCCGGTCGGTCAGAGACCGACTCCGGAGCCACTTTGATTGACTGCAGAAGACCTTCAAAAGACCGGAGAGTGGATCTAAACGGGTCGGGTCCGCGTTTCTCGCCCGCTATAGAGTCGACGAGGAGAAATCTCCGGCAAAATGGCCGTAGACTCAGCGAAGCCGTCGATCTTGACTCCTCAGAGCCTCGTATCCCTCCGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

255

Amino Acids

28.17

Weight (kDa)

4.83

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 95, 361, 554
AccI GTMKAC 2 cut(s) 680, 712
AccII CGCG 4 cut(s) 34, 143, 152, 658
AccIII TCCGGA 1 cut(s) 587
AciI CCGC 7 cut(s) 34, 386, 517, 528, 558, 656, 669
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 3 cut(s) 111, 187, 706
AcyI GRCGYC 2 cut(s) 96, 377
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 3 cut(s) 537, 538, 634
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 3 cut(s) 85, 469, 621
AjnI CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
AluBI AGCT 4 cut(s) 16, 392, 399, 551
AluI AGCT 4 cut(s) 16, 392, 399, 551
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 2 cut(s) 231, 572
AlwI GGATC 1 cut(s) 645
Aor13HI TCCGGA 1 cut(s) 587
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 4 cut(s) 111, 168, 187, 706
ApeKI GCWGC 2 cut(s) 392, 408
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 4 cut(s) 34, 98, 154, 213
AspS9I GGNCC 3 cut(s) 36, 52, 653
AsuHPI GGTGA 2 cut(s) 14, 554
AvaII GGWCC 3 cut(s) 36, 52, 653
BalI TGGCCA 1 cut(s) 113
BanI GGYRCC 3 cut(s) 95, 361, 554
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 619
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 379, 420
BceAI ACGGC 6 cut(s) 109, 337, 349, 504, 693, 710
BciT130I CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BciVI GTATCC 1 cut(s) 764
BcoDI GTCTC 2 cut(s) 231, 572
BfmI CTRYAG 2 cut(s) 607, 672
BfoI RGCGCY 2 cut(s) 99, 214
BfuI GTATCC 1 cut(s) 764
BglI GCCNNNNNGGC 2 cut(s) 167, 261
BisI GCNGC 3 cut(s) 393, 409, 528
BlsI GCNGC 3 cut(s) 394, 410, 529
Bme1390I CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
Bme18I GGWCC 3 cut(s) 36, 52, 653
BmgT120I GGNCC 3 cut(s) 36, 52, 653
BmiI GGNNCC 5 cut(s) 97, 363, 556, 592, 654
BmrFI CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 619
BplI GAGNNNNNCTC 2 cut(s) 569, 601
BpmI CTGGAG 1 cut(s) 106
BsaHI GRCGYC 2 cut(s) 96, 377
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 3 cut(s) 566, 587, 627
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 3 cut(s) 537, 538, 634
Bse3DI GCAATG 1 cut(s) 271
BseAI TCCGGA 1 cut(s) 587
BseBI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 537, 538, 634
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 3 cut(s) 527, 730, 756
BseRI GAGGAG 4 cut(s) 122, 372, 700, 730
BseXI GCAGC 2 cut(s) 379, 420
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 4 cut(s) 34, 143, 152, 658
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 4 cut(s) 113, 170, 189, 708
BshNI GGYRCC 3 cut(s) 95, 361, 554
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 401
BsiSI CCGG 5 cut(s) 174, 567, 588, 628, 697
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 537, 538, 634
BsmAI GTCTC 2 cut(s) 231, 572
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 4 cut(s) 113, 170, 189, 708
Bso31I GGTCTC 1 cut(s) 572
Bsp1286I GDGCHC 1 cut(s) 401
Bsp13I TCCGGA 1 cut(s) 587
Bsp143I GATC 5 cut(s) 446, 493, 511, 637, 730
BspACI CCGC 7 cut(s) 34, 386, 517, 528, 558, 656, 669
BspANI GGCC 4 cut(s) 113, 170, 189, 708
BspCNI CTCAG 3 cut(s) 528, 729, 755
BspEI TCCGGA 1 cut(s) 587
BspFNI CGCG 4 cut(s) 34, 143, 152, 658
BspLI GGNNCC 5 cut(s) 97, 363, 556, 592, 654
BspMAI CTGCAG 1 cut(s) 611
BspPI GGATC 1 cut(s) 645
BspT107I GGYRCC 3 cut(s) 95, 361, 554
BspTNI GGTCTC 1 cut(s) 572
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 5 cut(s) 446, 493, 511, 637, 730
BssNI GRCGYC 2 cut(s) 96, 377
Bst2UI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 2 cut(s) 96, 377
BstC8I GCNNGC 8 cut(s) 14, 145, 209, 262, 390, 397, 553, 669
BstDEI CTNAG 3 cut(s) 536, 716, 742
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 4 cut(s) 34, 143, 152, 658
BstH2I RGCGCY 2 cut(s) 99, 214
BstHHI GCGC 4 cut(s) 34, 98, 154, 213
BstKTI GATC 5 cut(s) 449, 496, 514, 640, 733
BstMAI GTCTC 2 cut(s) 231, 572
BstMBI GATC 5 cut(s) 446, 493, 511, 637, 730
BstMCI CGRYCG 1 cut(s) 571
BstNI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BstSCI CCNGG 6 cut(s) 54, 105, 113, 122, 161, 255
BstSFI CTRYAG 2 cut(s) 607, 672
BstUI CGCG 4 cut(s) 34, 143, 152, 658
BstV1I GCAGC 2 cut(s) 379, 420
BstV2I GAAGAC 1 cut(s) 619
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 637
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 4 cut(s) 113, 170, 189, 708
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 8 cut(s) 14, 145, 209, 262, 390, 397, 553, 669
CfoI GCGC 4 cut(s) 34, 98, 154, 213
Cfr13I GGNCC 3 cut(s) 36, 52, 653
CseI GACGC 2 cut(s) 136, 385
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
DdeI CTNAG 3 cut(s) 536, 716, 742
DinI GGCGCC 1 cut(s) 97
DpnI GATC 5 cut(s) 448, 495, 513, 639, 732
DpnII GATC 5 cut(s) 446, 493, 511, 637, 730
EaeI YGGCCR 3 cut(s) 111, 187, 706
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 2 cut(s) 375, 506
Ecl136II GAGCTC 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 401
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 3 cut(s) 36, 52, 653
Eco47III AGCGCT 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 399
EcoRII CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
EcoT38I GRGCYC 1 cut(s) 401
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 231
FaiI YATR 4 cut(s) 192, 438, 674, 766
FaqI GGGAC 1 cut(s) 86
FauI CCCGC 1 cut(s) 676
FblI GTMKAC 2 cut(s) 680, 712
Fnu4HI GCNGC 3 cut(s) 393, 409, 528
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 3 cut(s) 393, 409, 528
GlaI GCGC 4 cut(s) 33, 97, 153, 212
GluI GCNGC 3 cut(s) 393, 409, 528
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 2 cut(s) 99, 214
HaeIII GGCC 4 cut(s) 113, 170, 189, 708
HapII CCGG 5 cut(s) 174, 567, 588, 628, 697
HgaI GACGC 2 cut(s) 136, 385
HhaI GCGC 4 cut(s) 34, 98, 154, 213
Hin1I GRCGYC 2 cut(s) 96, 377
Hin6I GCGC 4 cut(s) 32, 96, 152, 211
HinP1I GCGC 4 cut(s) 32, 96, 152, 211
HincII GTYRAC 2 cut(s) 421, 681
HindII GTYRAC 2 cut(s) 421, 681
HinfI GANTC 7 cut(s) 47, 61, 299, 584, 677, 714, 737
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 5 cut(s) 174, 567, 588, 628, 697
HphI GGTGA 2 cut(s) 14, 554
Hpy166II GTNNAC 4 cut(s) 91, 421, 681, 713
Hpy188I TCNGA 6 cut(s) 52, 304, 493, 577, 745, 762
Hpy188III TCNNGA 3 cut(s) 506, 588, 734
Hpy8I GTNNAC 4 cut(s) 91, 421, 681, 713
Hpy99I CGWCG 6 cut(s) 245, 323, 379, 416, 685, 731
HpyAV CCTTC 2 cut(s) 160, 627
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 1 cut(s) 609
HpyF3I CTNAG 3 cut(s) 536, 716, 742
Hsp92I GRCGYC 2 cut(s) 96, 377
HspAI GCGC 4 cut(s) 32, 96, 152, 211
KasI GGCGCC 1 cut(s) 95
Kpn2I TCCGGA 1 cut(s) 587
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 5 cut(s) 446, 493, 511, 637, 730
LmnI GCTCC 2 cut(s) 135, 590
Lsp1109I GCAGC 2 cut(s) 379, 420
LweI GCATC 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 20
MalI GATC 5 cut(s) 448, 495, 513, 639, 732
MboI GATC 5 cut(s) 446, 493, 511, 637, 730
MboII GAAGA 4 cut(s) 16, 260, 488, 624
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 401
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 1 cut(s) 100
MluI ACGCGT 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 113
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 5 cut(s) 293, 578, 686, 708, 731
Mox20I TGGCCA 1 cut(s) 113
MroI TCCGGA 1 cut(s) 587
MroXI GAANNNNTTC 1 cut(s) 616
MscI TGGCCA 1 cut(s) 113
MseI TTAA 1 cut(s) 420
Msp20I TGGCCA 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 392, 551
MspI CCGG 5 cut(s) 174, 567, 588, 628, 697
MspR9I CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
MvaI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
MvnI CGCG 4 cut(s) 34, 143, 152, 658
NarI GGCGCC 1 cut(s) 96
NdeII GATC 5 cut(s) 446, 493, 511, 637, 730
NlaIV GGNNCC 5 cut(s) 97, 363, 556, 592, 654
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 20
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 3 cut(s) 56, 300, 315
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 47, 61
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 3 cut(s) 394, 410, 529
PleI GAGTC 5 cut(s) 293, 578, 685, 708, 731
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 5 cut(s) 293, 578, 685, 708, 731
Psp124BI GAGCTC 1 cut(s) 401
Psp6I CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
PspN4I GGNNCC 5 cut(s) 97, 363, 556, 592, 654
PspPI GGNCC 3 cut(s) 36, 52, 653
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 637
PvuII CAGCTG 2 cut(s) 392, 551
SacI GAGCTC 1 cut(s) 401
SalI GTCGAC 1 cut(s) 679
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 3 cut(s) 393, 409, 528
Sau3AI GATC 5 cut(s) 446, 493, 511, 637, 730
Sau96I GGNCC 3 cut(s) 36, 52, 653
SchI GAGTC 5 cut(s) 293, 578, 686, 708, 731
ScrFI CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
SduI GDGCHC 1 cut(s) 401
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 2 cut(s) 607, 672
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 3 cut(s) 36, 52, 653
Sse9I AATT 1 cut(s) 100
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 7 cut(s) 34, 386, 517, 528, 558, 656, 669
SspDI GGCGCC 1 cut(s) 95
SstI GAGCTC 1 cut(s) 401
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 6 cut(s) 54, 105, 113, 122, 161, 255
TaaI ACNGT 1 cut(s) 431
TaqI TCGA 4 cut(s) 294, 374, 680, 729
TaqII GACCGA 2 cut(s) 561, 596
TasI AATT 1 cut(s) 100
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 2 cut(s) 47, 61
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 392, 408
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 17, 243
TspGWI ACGGA 3 cut(s) 190, 293, 360
VpaK11BI GGWCC 3 cut(s) 36, 52, 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmiI GTMKAC 2 cut(s) 680, 712
XmnI GAANNNNTTC 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.