Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

30465458 .. 30465697

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCAGGATGAGGTAGGGTTTGATGGGACGTCGTCGTTTGGTGGTTCAATGAGACCGTTGAAAAGGCCGAAAGTGGGTGAAGAGAAGAATGGTGACGGAGATGATGGCGGTGAATCGGAGTGGAGAGCAACGGCGATCATGAGCTCAATTCAGAGGCTGGAAAAGGAAGTGATCAACGGCGCTGGTAATGCGTCCACCGCGGTTCTTAGGATTTGCAAACTCAGTAGAGATGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

79

Amino Acids

8.48

Weight (kDa)

4.88

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	32
AccII	CGCG	1 cut(s)	200
AciI	CCGC	3 cut(s)	108, 198, 200
AcyI	GRCGYC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	48, 61
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	46, 227
AlwNI	CAGNNNCTG	1 cut(s)	157
AoxI	GGCC	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	89, 104, 122
BanII	GRGCYC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BccI	CCATC	2 cut(s)	17, 98
BceAI	ACGGC	2 cut(s)	147, 193
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	46, 227
BfoI	RGCGCY	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	46, 227
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	135, 171
BspACI	CCGC	3 cut(s)	108, 198, 200
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	135, 171
BssNI	GRCGYC	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	206, 221
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	138, 174
BstMAI	GTCTC	2 cut(s)	46, 227
BstMBI	GATC	2 cut(s)	135, 171
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstUI	CGCG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	13
CaiI	CAGNNNCTG	1 cut(s)	157
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	1 cut(s)	182
Cfr42I	CCGCGG	1 cut(s)	201
CseI	GACGC	1 cut(s)	180
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	3 cut(s)	67, 144, 157
CviKI_1	RGCY	3 cut(s)	67, 144, 157
DdeI	CTNAG	2 cut(s)	206, 221
DpnI	GATC	2 cut(s)	137, 173
DpnII	GATC	2 cut(s)	135, 171
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	146
FaeI	CATG	1 cut(s)	142
FaiI	YATR	1 cut(s)	140
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	171
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	146
GlaI	GCGC	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	67
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	3 cut(s)	89, 104, 122
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	2 cut(s)	118, 153
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	2 cut(s)	34, 37
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	4, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
HpyF3I	CTNAG	2 cut(s)	206, 221
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	180
Ksp22I	TGATCA	1 cut(s)	171
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	135, 171
LpnPI	CCDG	2 cut(s)	143, 168
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	137, 173
MboI	GATC	2 cut(s)	135, 171
MboII	GAAGA	2 cut(s)	92, 97
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	2 cut(s)	4, 147
MspA1I	CMGCKG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NdeII	GATC	2 cut(s)	135, 171
NlaIII	CATG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	92
PagI	TCATGA	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	146
SacII	CCGCGG	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	135, 171
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	3 cut(s)	15, 32, 146
Sfr303I	CCGCGG	1 cut(s)	201
SgeI	CNNG	5 cut(s)	17, 151, 170, 195, 211
SgrBI	CCGCGG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	3 cut(s)	108, 198, 200
SstI	GAGCTC	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	1 cut(s)	32
TasI	AATT	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	111
Tth111I	GACNNNGTC	1 cut(s)	31
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.