Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006420.1

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Forward (+)

137837 .. 138716

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006420.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgaagaactgcgagctttgtcacctaactgcgcggacctactgcgaatcggaccaggcgattctctgctgggactgcgatttcaaggttcacggcgccaatttcctggtggccaggcactccaggacgctcctctgccacgcgtgccacgcgccgactgcctggaaggcctccggcgagaaactcggccatactttttccgtttgcgagcgctgtgtggcgagaaatgaaagcagagacgacgaggaagagagccaggctggcaatgatgatgctacggatgatgacgacctcgatgactccgattacgatgacgacgacggcgatattgattttgatgaggacggagacaatcaggtggtgccgtggggttcgacgcctcctccgccagctgcgagctctaccagcagcgacgaggttagcaatgacggtagatatggtcgccgatcagtcggcgtggtttcgttgaagcgaaccagagataatgcttccgatcttcgctctctggacgatctccgccgtttagccgcccgactgaggggtgaaacaactggcaccgcccattccggtcggtcagagaccgacggcggagccactgtggttgactgcagaagaccttcaaaagaccggagagtggatctaaacgggtcgggtccgcgtttctcgcccgctatagagtcgacgaggagaaatctccggcaaaatggccgtagactcagcgaagccgtcgatcttgactcctcagagcctcgtatccctccgatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

255

Amino Acids

28.07

Weight (kDa)

4.83

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	95, 361, 554
AccI	GTMKAC	2 cut(s)	680, 712
AccII	CGCG	4 cut(s)	34, 143, 152, 658
AciI	CCGC	8 cut(s)	34, 386, 517, 528, 558, 588, 656, 669
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	3 cut(s)	111, 187, 706
AcyI	GRCGYC	2 cut(s)	96, 377
AfeI	AGCGCT	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	537, 538, 634
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	85, 469, 621
AjnI	CCWGG	6 cut(s)	54, 105, 113, 122, 161, 255
AluBI	AGCT	3 cut(s)	16, 392, 399
AluI	AGCT	3 cut(s)	16, 392, 399
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	3 cut(s)	231, 342, 572
AlwI	GGATC	1 cut(s)	645
Aor51HI	AGCGCT	1 cut(s)	212
AoxI	GGCC	4 cut(s)	111, 168, 187, 706
ApeKI	GCWGC	2 cut(s)	392, 408
Asp700I	GAANNNNTTC	1 cut(s)	616
AspLEI	GCGC	4 cut(s)	34, 98, 154, 213
AspS9I	GGNCC	3 cut(s)	36, 52, 653
AsuHPI	GGTGA	2 cut(s)	14, 554
AvaII	GGWCC	3 cut(s)	36, 52, 653
BalI	TGGCCA	1 cut(s)	113
BanI	GGYRCC	3 cut(s)	95, 361, 554
BanII	GRGCYC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	379, 420
BceAI	ACGGC	7 cut(s)	109, 337, 349, 504, 601, 693, 710
BciT130I	CCWGG	6 cut(s)	56, 107, 115, 124, 163, 257
BciVI	GTATCC	1 cut(s)	764
BcoDI	GTCTC	3 cut(s)	231, 342, 572
BfmI	CTRYAG	2 cut(s)	607, 672
BfoI	RGCGCY	2 cut(s)	99, 214
BfuI	GTATCC	1 cut(s)	764
BglI	GCCNNNNNGGC	2 cut(s)	167, 261
BisI	GCNGC	3 cut(s)	393, 409, 528
BlsI	GCNGC	3 cut(s)	394, 410, 529
Bme1390I	CCNGG	6 cut(s)	56, 107, 115, 124, 163, 257
Bme18I	GGWCC	3 cut(s)	36, 52, 653
BmgT120I	GGNCC	3 cut(s)	36, 52, 653
BmiI	GGNNCC	5 cut(s)	97, 363, 556, 592, 654
BmrFI	CCNGG	6 cut(s)	56, 107, 115, 124, 163, 257
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	619
BpmI	CTGGAG	1 cut(s)	106
BsaHI	GRCGYC	2 cut(s)	96, 377
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	2 cut(s)	566, 627
BsaXI	ACNNNNNCTCC	4 cut(s)	367, 397, 582, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	537, 538, 634
Bse1I	ACTGG	1 cut(s)	556
Bse3DI	GCAATG	2 cut(s)	271, 430
BseBI	CCWGG	6 cut(s)	56, 107, 115, 124, 163, 257
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	537, 538, 634
BseMI	GCAATG	2 cut(s)	271, 430
BseMII	CTCAG	3 cut(s)	527, 730, 756
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	4 cut(s)	122, 372, 700, 730
BseXI	GCAGC	2 cut(s)	379, 420
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	4 cut(s)	34, 143, 152, 658
Bsh1285I	CGRYCG	1 cut(s)	571
BshFI	GGCC	4 cut(s)	113, 170, 189, 708
BshNI	GGYRCC	3 cut(s)	95, 361, 554
BsiEI	CGRYCG	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	174, 567, 628, 697
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	537, 538, 634
BsmAI	GTCTC	3 cut(s)	231, 342, 572
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	113, 170, 189, 708
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	5 cut(s)	446, 493, 511, 637, 730
BspACI	CCGC	8 cut(s)	34, 386, 517, 528, 558, 588, 656, 669
BspANI	GGCC	4 cut(s)	113, 170, 189, 708
BspCNI	CTCAG	3 cut(s)	528, 729, 755
BspFNI	CGCG	4 cut(s)	34, 143, 152, 658
BspLI	GGNNCC	5 cut(s)	97, 363, 556, 592, 654
BspMAI	CTGCAG	1 cut(s)	611
BspPI	GGATC	1 cut(s)	645
BspT107I	GGYRCC	3 cut(s)	95, 361, 554
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	2 cut(s)	271, 430
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	5 cut(s)	446, 493, 511, 637, 730
BssNI	GRCGYC	2 cut(s)	96, 377
Bst2UI	CCWGG	6 cut(s)	56, 107, 115, 124, 163, 257
Bst4CI	ACNGT	2 cut(s)	431, 598
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	2 cut(s)	96, 377
BstC8I	GCNNGC	7 cut(s)	14, 145, 209, 262, 390, 397, 669
BstDEI	CTNAG	3 cut(s)	536, 716, 742
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	4 cut(s)	34, 143, 152, 658
BstH2I	RGCGCY	2 cut(s)	99, 214
BstHHI	GCGC	4 cut(s)	34, 98, 154, 213
BstKTI	GATC	5 cut(s)	449, 496, 514, 640, 733
BstMAI	GTCTC	3 cut(s)	231, 342, 572
BstMBI	GATC	5 cut(s)	446, 493, 511, 637, 730
BstMCI	CGRYCG	1 cut(s)	571
BstMWI	GCNNNNNNNGC	9 cut(s)	75, 144, 149, 158, 167, 261, 385, 405, 664
BstNI	CCWGG	6 cut(s)	56, 107, 115, 124, 163, 257
BstSCI	CCNGG	6 cut(s)	54, 105, 113, 122, 161, 255
BstSFI	CTRYAG	2 cut(s)	607, 672
BstUI	CGCG	4 cut(s)	34, 143, 152, 658
BstV1I	GCAGC	2 cut(s)	379, 420
BstV2I	GAAGAC	1 cut(s)	619
BstX2I	RGATCY	1 cut(s)	637
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	637
BsuI	GTATCC	1 cut(s)	764
BsuRI	GGCC	4 cut(s)	113, 170, 189, 708
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	7 cut(s)	14, 145, 209, 262, 390, 397, 669
CfoI	GCGC	4 cut(s)	34, 98, 154, 213
Cfr13I	GGNCC	3 cut(s)	36, 52, 653
CseI	GACGC	2 cut(s)	136, 385
CspCI	CAANNNNNGTGG	2 cut(s)	583, 618
DdeI	CTNAG	3 cut(s)	536, 716, 742
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	5 cut(s)	448, 495, 513, 639, 732
DpnII	GATC	5 cut(s)	446, 493, 511, 637, 730
EaeI	YGGCCR	3 cut(s)	111, 187, 706
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	3 cut(s)	375, 506, 603
Ecl136II	GAGCTC	1 cut(s)	399
Eco147I	AGGCCT	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	3 cut(s)	36, 52, 653
Eco47III	AGCGCT	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	399
EcoRII	CCWGG	6 cut(s)	54, 105, 113, 122, 161, 255
EcoT38I	GRGCYC	1 cut(s)	401
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	231
FaiI	YATR	4 cut(s)	192, 438, 674, 766
FaqI	GGGAC	1 cut(s)	86
FauI	CCCGC	1 cut(s)	676
FblI	GTMKAC	2 cut(s)	680, 712
Fnu4HI	GCNGC	3 cut(s)	393, 409, 528
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	3 cut(s)	393, 409, 528
GlaI	GCGC	4 cut(s)	33, 97, 153, 212
GluI	GCNGC	3 cut(s)	393, 409, 528
GsaI	CCCAGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	106
HaeII	RGCGCY	2 cut(s)	99, 214
HaeIII	GGCC	4 cut(s)	113, 170, 189, 708
HapII	CCGG	4 cut(s)	174, 567, 628, 697
HgaI	GACGC	2 cut(s)	136, 385
HhaI	GCGC	4 cut(s)	34, 98, 154, 213
Hin1I	GRCGYC	2 cut(s)	96, 377
Hin6I	GCGC	4 cut(s)	32, 96, 152, 211
HinP1I	GCGC	4 cut(s)	32, 96, 152, 211
HincII	GTYRAC	2 cut(s)	604, 681
HindII	GTYRAC	2 cut(s)	604, 681
HinfI	GANTC	6 cut(s)	47, 61, 299, 677, 714, 737
HpaII	CCGG	4 cut(s)	174, 567, 628, 697
HphI	GGTGA	2 cut(s)	14, 554
Hpy166II	GTNNAC	4 cut(s)	91, 604, 681, 713
Hpy188I	TCNGA	6 cut(s)	52, 304, 493, 577, 745, 762
Hpy188III	TCNNGA	2 cut(s)	506, 734
Hpy8I	GTNNAC	4 cut(s)	91, 604, 681, 713
Hpy99I	CGWCG	8 cut(s)	245, 320, 323, 379, 416, 587, 685, 731
HpyAV	CCTTC	2 cut(s)	160, 627
HpyCH4III	ACNGT	2 cut(s)	431, 598
HpyCH4V	TGCA	1 cut(s)	609
HpyF10VI	GCNNNNNNNGC	9 cut(s)	75, 144, 149, 158, 167, 261, 385, 405, 664
HpyF3I	CTNAG	3 cut(s)	536, 716, 742
Hsp92I	GRCGYC	2 cut(s)	96, 377
HspAI	GCGC	4 cut(s)	32, 96, 152, 211
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	5 cut(s)	446, 493, 511, 637, 730
LmnI	GCTCC	2 cut(s)	135, 590
Lsp1109I	GCAGC	2 cut(s)	379, 420
LweI	GCATC	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	5 cut(s)	448, 495, 513, 639, 732
MboI	GATC	5 cut(s)	446, 493, 511, 637, 730
MboII	GAAGA	4 cut(s)	16, 260, 488, 624
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	401
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	1 cut(s)	100
MluI	ACGCGT	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	113
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	4 cut(s)	293, 686, 708, 731
Mox20I	TGGCCA	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	616
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	4 cut(s)	174, 567, 628, 697
MspR9I	CCNGG	6 cut(s)	56, 107, 115, 124, 163, 257
MvaI	CCWGG	6 cut(s)	56, 107, 115, 124, 163, 257
MvnI	CGCG	4 cut(s)	34, 143, 152, 658
MwoI	GCNNNNNNNGC	9 cut(s)	75, 144, 149, 158, 167, 261, 385, 405, 664
NarI	GGCGCC	1 cut(s)	96
NdeII	GATC	5 cut(s)	446, 493, 511, 637, 730
NlaIV	GGNNCC	5 cut(s)	97, 363, 556, 592, 654
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	4 cut(s)	56, 300, 315, 321
PdmI	GAANNNNTTC	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	47, 61
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	394, 410, 529
PleI	GAGTC	4 cut(s)	293, 685, 708, 731
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	4 cut(s)	293, 685, 708, 731
Psp124BI	GAGCTC	1 cut(s)	401
Psp6I	CCWGG	6 cut(s)	54, 105, 113, 122, 161, 255
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	6 cut(s)	54, 105, 113, 122, 161, 255
PspN4I	GGNNCC	5 cut(s)	97, 363, 556, 592, 654
PspPI	GGNCC	3 cut(s)	36, 52, 653
PstI	CTGCAG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	401
SalI	GTCGAC	1 cut(s)	679
SatI	GCNGC	3 cut(s)	393, 409, 528
Sau3AI	GATC	5 cut(s)	446, 493, 511, 637, 730
Sau96I	GGNCC	3 cut(s)	36, 52, 653
SchI	GAGTC	4 cut(s)	293, 686, 708, 731
ScrFI	CCNGG	6 cut(s)	56, 107, 115, 124, 163, 257
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	2 cut(s)	607, 672
SfoI	GGCGCC	1 cut(s)	97
SinI	GGWCC	3 cut(s)	36, 52, 653
Sse9I	AATT	1 cut(s)	100
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	8 cut(s)	34, 386, 517, 528, 558, 588, 656, 669
SspDI	GGCGCC	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	401
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	6 cut(s)	54, 105, 113, 122, 161, 255
TaaI	ACNGT	2 cut(s)	431, 598
TaqI	TCGA	4 cut(s)	294, 374, 680, 729
TaqII	GACCGA	2 cut(s)	561, 596
TasI	AATT	1 cut(s)	100
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	2 cut(s)	47, 61
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	392, 408
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	17, 243
TspGWI	ACGGA	3 cut(s)	190, 293, 360
TspRI	CASTG	1 cut(s)	601
VpaK11BI	GGWCC	3 cut(s)	36, 52, 653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	2 cut(s)	680, 712
XmnI	GAANNNNTTC	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.