Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

30566277 .. 30567412

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG280200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAAGAGTGCGAGCTGTGTGGAGTGAGAGCTCGGATGTACTGCGAGGCGGACCGCGCGAGTTTATGCTGGGACTGCGACGAGAAAGTTCACGGAGCTAACTTTCTGGTGGCGAAGCATCCGAGAGTTCTTCTCTGCCATGTGTGCCAGTCGCAGACGCCGTGGACGAGTTGCGGAGCCAAGCTGGCGCCGACGGTGTCGGTCTGCCAGAGTTGCGTTGGAAGCTGTAGTAAGATTGACCTGAACGAGGAGCAAGAAAGCGAGGCAGAGAATGAAGAAGAAGATTATTATGATGATGAAGATGAAGAAGATGATGACGTTGAGGATGAGGAGGAAGAGGATGAGAACCAGGTGGTTCCATGGTCATGCTGTTCTTACTCGCCGGCACAGCCTCCACCAGCAGTGAGTGGTTCGGATAGTGAAGCCGAGATTTCGGTGTTGAAGCGACTGCGAGAGAATGTAGATGTGGATTATTCTGATGATGAGGTAGGGTTTGATGGGACGTCGTCGTTTGGTGGTTCAATGAGACCGTTGAAAAGGCCGAAAGTGGGTGAAGAGAAGAATGGTGACGGAGATGATGGCGGTGAATCGGAGTGGAGAGCAACGGCGATCATGAGCTCAATTCAGAGGCTGGAAAAGGAAGTGATCAACGGCGCTGGTAATGCATCCACCGCGGTTCTTAGGATTTGCAAACTCAGTAGAGATGAGAGCAGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

239

Amino Acids

26.34

Weight (kDa)

4.27

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 43	2.1e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	187
AccII	CGCG	3 cut(s)	57, 59, 674
AciI	CCGC	6 cut(s)	50, 55, 174, 582, 672, 674
AcyI	GRCGYC	3 cut(s)	158, 188, 503
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	247, 548
AgsI	TTSAA	3 cut(s)	442, 522, 535
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	6 cut(s)	16, 32, 98, 184, 225, 618
AluI	AGCT	6 cut(s)	16, 32, 98, 184, 225, 618
Alw21I	GWGCWC	2 cut(s)	34, 620
Alw26I	GTCTC	1 cut(s)	520
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	711
AspLEI	GCGC	3 cut(s)	59, 190, 656
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	3 cut(s)	563, 578, 596
AvaII	GGWCC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	34, 620
Bbv12I	GWGCWC	2 cut(s)	34, 620
BccI	CCATC	2 cut(s)	491, 572
BceAI	ACGGC	3 cut(s)	145, 621, 667
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	520
BfmI	CTRYAG	1 cut(s)	226
BfoI	RGCGCY	2 cut(s)	191, 657
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	712
BlsI	GCNGC	1 cut(s)	713
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	3 cut(s)	178, 189, 357
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	127, 674
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BsaHI	GRCGYC	3 cut(s)	158, 188, 503
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	3 cut(s)	161, 359, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 548
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	161, 359, 672
BseGI	GGATG	5 cut(s)	42, 118, 331, 346, 665
BseLI	CCNNNNNNNGG	2 cut(s)	247, 548
BseMII	CTCAG	1 cut(s)	709
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	263, 344
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	3 cut(s)	57, 59, 674
BshFI	GGCC	1 cut(s)	541
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	34, 620
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	86, 514
BslI	CCNNNNNNNGG	2 cut(s)	247, 548
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	2 cut(s)	86, 514
BsnI	GGCC	1 cut(s)	541
Bso31I	GGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	34, 620
Bsp143I	GATC	2 cut(s)	609, 645
Bsp19I	CCATGG	1 cut(s)	359
BspACI	CCGC	6 cut(s)	50, 55, 174, 582, 672, 674
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	1 cut(s)	708
BspFNI	CGCG	3 cut(s)	57, 59, 674
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	178, 189, 357
BspT107I	GGYRCC	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	3 cut(s)	161, 359, 672
BssMI	GATC	2 cut(s)	609, 645
BssNI	GRCGYC	3 cut(s)	158, 188, 503
BssT1I	CCWWGG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	196, 531
Bst6I	CTCTTC	2 cut(s)	330, 549
BstACI	GRCGYC	3 cut(s)	158, 188, 503
BstC8I	GCNNGC	3 cut(s)	14, 186, 384
BstDEI	CTNAG	2 cut(s)	680, 695
BstDSI	CCRYGG	3 cut(s)	161, 359, 672
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	5 cut(s)	42, 118, 331, 346, 665
BstFNI	CGCG	3 cut(s)	57, 59, 674
BstH2I	RGCGCY	2 cut(s)	191, 657
BstHHI	GCGC	3 cut(s)	59, 190, 656
BstKTI	GATC	2 cut(s)	612, 648
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	2 cut(s)	609, 645
BstMWI	GCNNNNNNNGC	9 cut(s)	56, 75, 144, 185, 213, 222, 388, 662, 671
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	3 cut(s)	57, 59, 674
BsuRI	GGCC	1 cut(s)	541
BtgI	CCRYGG	3 cut(s)	161, 359, 672
BtsCI	GGATG	5 cut(s)	42, 118, 331, 346, 665
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	3 cut(s)	14, 186, 384
CaiI	CAGNNNCTG	1 cut(s)	631
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	3 cut(s)	59, 190, 656
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	52
Cfr42I	CCGCGG	1 cut(s)	675
CpoI	CGGWCCG	1 cut(s)	52
CseI	GACGC	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	40
CspI	CGGWCCG	1 cut(s)	52
CviAII	CATG	4 cut(s)	140, 360, 366, 613
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	680, 695
DinI	GGCGCC	1 cut(s)	189
DpnI	GATC	2 cut(s)	611, 647
DpnII	GATC	2 cut(s)	609, 645
Eam1104I	CTCTTC	2 cut(s)	330, 549
EarI	CTCTTC	2 cut(s)	330, 549
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	32, 618
Eco130I	CCWWGG	1 cut(s)	359
Eco24I	GRGCYC	2 cut(s)	34, 620
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	32, 618
EcoICRI	GAGCTC	2 cut(s)	32, 618
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	359
EcoT22I	ATGCAT	1 cut(s)	667
EcoT38I	GRGCYC	2 cut(s)	34, 620
EgeI	GGCGCC	1 cut(s)	189
EheI	GGCGCC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	4 cut(s)	143, 363, 369, 616
FaiI	YATR	6 cut(s)	67, 141, 291, 361, 367, 614
FaqI	GGGAC	2 cut(s)	86, 514
FatI	CATG	4 cut(s)	139, 359, 365, 612
FbaI	TGATCA	1 cut(s)	645
Fnu4HI	GCNGC	1 cut(s)	712
FokI	GGATG	5 cut(s)	49, 105, 338, 353, 652
FriOI	GRGCYC	2 cut(s)	34, 620
Fsp4HI	GCNGC	1 cut(s)	712
GlaI	GCGC	3 cut(s)	58, 189, 655
GluI	GCNGC	1 cut(s)	712
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	2 cut(s)	191, 657
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	3 cut(s)	59, 190, 656
Hin1I	GRCGYC	3 cut(s)	158, 188, 503
Hin1II	CATG	4 cut(s)	143, 363, 369, 616
Hin6I	GCGC	3 cut(s)	57, 188, 654
HinP1I	GCGC	3 cut(s)	57, 188, 654
HinfI	GANTC	1 cut(s)	587
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	3 cut(s)	563, 578, 596
Hpy166II	GTNNAC	2 cut(s)	91, 165
Hpy188I	TCNGA	6 cut(s)	36, 123, 415, 478, 592, 627
Hpy188III	TCNNGA	1 cut(s)	613
Hpy8I	GTNNAC	2 cut(s)	91, 165
Hpy99I	CGWCG	4 cut(s)	83, 196, 508, 511
HpyCH4III	ACNGT	2 cut(s)	196, 531
HpyCH4IV	ACGT	2 cut(s)	318, 503
HpyCH4V	TGCA	2 cut(s)	665, 690
HpyF10VI	GCNNNNNNNGC	9 cut(s)	56, 75, 144, 185, 213, 222, 388, 662, 671
HpyF3I	CTNAG	2 cut(s)	680, 695
HpySE526I	ACGT	2 cut(s)	318, 503
Hsp92I	GRCGYC	3 cut(s)	158, 188, 503
Hsp92II	CATG	4 cut(s)	143, 363, 369, 616
HspAI	GCGC	3 cut(s)	57, 188, 654
KasI	GGCGCC	1 cut(s)	187
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	645
KspI	CCGCGG	1 cut(s)	675
Kzo9I	GATC	2 cut(s)	609, 645
LmnI	GCTCC	3 cut(s)	95, 176, 250
LweI	GCATC	2 cut(s)	127, 674
MabI	ACCWGGT	1 cut(s)	348
MaeII	ACGT	2 cut(s)	318, 503
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	2 cut(s)	611, 647
MboI	GATC	2 cut(s)	609, 645
MhlI	GDGCHC	2 cut(s)	34, 620
MluCI	AATT	1 cut(s)	621
Mly113I	GGCGCC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	199
Mph1103I	ATGCAT	1 cut(s)	667
MroNI	GCCGGC	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	364
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	3 cut(s)	57, 59, 674
MwoI	GCNNNNNNNGC	9 cut(s)	56, 75, 144, 185, 213, 222, 388, 662, 671
NaeI	GCCGGC	1 cut(s)	384
NarI	GGCGCC	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	359
NdeII	GATC	2 cut(s)	609, 645
NgoMIV	GCCGGC	1 cut(s)	382
NlaIII	CATG	4 cut(s)	143, 363, 369, 616
NlaIV	GGNNCC	3 cut(s)	178, 189, 357
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	566
NsiI	ATGCAT	1 cut(s)	667
PagI	TCATGA	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 164
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	587
PflFI	GACNNNGTC	2 cut(s)	196, 505
PkrI	GCNGC	1 cut(s)	713
PluTI	GGCGCC	1 cut(s)	191
Psp124BI	GAGCTC	2 cut(s)	34, 620
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	3 cut(s)	178, 189, 357
PspPI	GGNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	631
PsyI	GACNNNGTC	2 cut(s)	196, 505
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	364
Rsr2I	CGGWCCG	1 cut(s)	52
RsrII	CGGWCCG	1 cut(s)	52
SacI	GAGCTC	2 cut(s)	34, 620
SacII	CCGCGG	1 cut(s)	675
SatI	GCNGC	1 cut(s)	712
Sau3AI	GATC	2 cut(s)	609, 645
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	34, 620
SexAI	ACCWGGT	1 cut(s)	348
SfaNI	GCATC	2 cut(s)	127, 674
SfcI	CTRYAG	1 cut(s)	226
SfoI	GGCGCC	1 cut(s)	189
Sfr303I	CCGCGG	1 cut(s)	675
SgrBI	CCGCGG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	364
Sse9I	AATT	1 cut(s)	621
SsiI	CCGC	6 cut(s)	50, 55, 174, 582, 672, 674
SspDI	GGCGCC	1 cut(s)	187
SstI	GAGCTC	2 cut(s)	34, 620
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	196, 531
TaiI	ACGT	2 cut(s)	321, 506
TaqII	GACCGA	1 cut(s)	190
TasI	AATT	1 cut(s)	621
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	587
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	1 cut(s)	711
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	4 cut(s)	17, 288, 312, 318
TspGWI	ACGGA	2 cut(s)	108, 585
TspRI	CASTG	1 cut(s)	408
Tth111I	GACNNNGTC	2 cut(s)	196, 505
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
ZraI	GACGTC	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.