Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Forward (+)

1563005 .. 1564645

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G033600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAGAAGAAGTGTGAGCTTTGTGATTCTGTAGCAAAGATGTATTGTGAATCAGATCAGGCTAGCCTGTGTTGGGAGTGTGACATCAAGGTTCATGCTGCAAACTTCCTGGTGGCTAAGCATTCAAGGACTCTGCTTTGCCATGTCTGTCAATCTCCAACCCCCTGGACTGGCTCTGGACTGAACCTCGGCCCTACAGTTTCGGTTTGTGAGAAATGCGTTCATACTTCTAACCAGGAACCCAGAAATGAAGAAAATGATGAACAAGAAGAAGATGATGATCATGACCATGATCATGATGATAGAGATGATGGAGAAAATAACCCTGAAGAAGAAGATGATGGTGATGATGATGATGGGGATCGGGATGATGATGATGAAGAAGAAAATCAAGTTGTTCCATGGTCTCCTCCACCAGTCTCATCAAGTTCTTTAAGTAGTAGTGAAGAATGTTTCAGTGAAAGCCTCTCCAAATCAACAACAGCATTTTCATGTAAGCGCATGCGCTCCTGCAATTCACACTCGAATTTTCAGAACGAGGAGGGCCTCAATTGGGACACAAGGACCCGAAGAGAACCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

195

Amino Acids

21.98

Weight (kDa)

4.35

Isoelectric Point (pI)

66.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	348
AfiI	CCNNNNNNNGG	3 cut(s)	73, 170, 553
AgsI	TTSAA	1 cut(s)	126
AjnI	CCWGG	3 cut(s)	108, 164, 234
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	411, 424
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	190, 544
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	2 cut(s)	501, 507
AspS9I	GGNCC	3 cut(s)	191, 544, 564
AsuHPI	GGTGA	1 cut(s)	356
AsuNHI	GCTAGC	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	305, 335, 350
BciT130I	CCWGG	3 cut(s)	110, 166, 236
BclI	TGATCA	2 cut(s)	280, 292
BcoDI	GTCTC	2 cut(s)	411, 424
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	2 cut(s)	30, 195
BisI	GCNGC	1 cut(s)	99
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	3 cut(s)	110, 166, 236
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	3 cut(s)	191, 544, 564
BmiI	GGNNCC	2 cut(s)	240, 566
BmrFI	CCNGG	3 cut(s)	110, 166, 236
BmtI	GCTAGC	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	117
BsaBI	GATNNNNATC	2 cut(s)	279, 360
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	164, 187, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 170, 553
Bse1I	ACTGG	2 cut(s)	175, 416
Bse8I	GATNNNNATC	2 cut(s)	279, 360
BseBI	CCWGG	3 cut(s)	110, 166, 236
BseDI	CCNNGG	3 cut(s)	164, 187, 401
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	2 cut(s)	279, 360
BseLI	CCNNNNNNNGG	3 cut(s)	73, 170, 553
BseNI	ACTGG	2 cut(s)	175, 416
BseRI	GAGGAG	2 cut(s)	399, 554
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	192, 546
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	3 cut(s)	73, 170, 553
BsmAI	GTCTC	2 cut(s)	411, 424
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	192, 546
Bso31I	GGTCTC	1 cut(s)	411
Bsp143I	GATC	4 cut(s)	55, 280, 292, 361
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	401
BspANI	GGCC	2 cut(s)	192, 546
BspHI	TCATGA	2 cut(s)	283, 295
BspLI	GGNNCC	2 cut(s)	240, 566
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	175, 416
BssECI	CCNNGG	3 cut(s)	164, 187, 401
BssMI	GATC	4 cut(s)	55, 280, 292, 361
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	3 cut(s)	110, 166, 236
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	565
BstC8I	GCNNGC	2 cut(s)	64, 503
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	2 cut(s)	501, 507
BstKTI	GATC	4 cut(s)	58, 283, 295, 364
BstMAI	GTCTC	2 cut(s)	411, 424
BstMBI	GATC	4 cut(s)	55, 280, 292, 361
BstNI	CCWGG	3 cut(s)	110, 166, 236
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	3 cut(s)	108, 164, 234
BstSFI	CTRYAG	2 cut(s)	30, 195
BstV1I	GCAGC	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	192, 546
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	64, 503
CciI	TCATGA	2 cut(s)	283, 295
CfoI	GCGC	2 cut(s)	501, 507
Cfr13I	GGNCC	3 cut(s)	191, 544, 564
CviAII	CATG	8 cut(s)	95, 143, 284, 290, 296, 402, 492, 502
CviJI	RGCY	8 cut(s)	19, 62, 66, 116, 174, 192, 465, 546
CviKI_1	RGCY	8 cut(s)	19, 62, 66, 116, 174, 192, 465, 546
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	4 cut(s)	57, 282, 294, 363
DpnII	GATC	4 cut(s)	55, 280, 292, 361
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	348
EcoO109I	RGGNCCY	2 cut(s)	544, 564
EcoRII	CCWGG	3 cut(s)	108, 164, 234
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	8 cut(s)	98, 146, 287, 293, 299, 405, 495, 505
FaiI	YATR	9 cut(s)	96, 144, 225, 285, 291, 297, 403, 493, 503
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	8 cut(s)	94, 142, 283, 289, 295, 401, 491, 501
FbaI	TGATCA	2 cut(s)	280, 292
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	2 cut(s)	500, 506
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	192, 546
HhaI	GCGC	2 cut(s)	501, 507
Hin1II	CATG	8 cut(s)	98, 146, 287, 293, 299, 405, 495, 505
Hin6I	GCGC	2 cut(s)	499, 505
HinP1I	GCGC	2 cut(s)	499, 505
HinfI	GANTC	3 cut(s)	26, 50, 130
HphI	GGTGA	1 cut(s)	356
Hpy188I	TCNGA	2 cut(s)	55, 534
Hpy188III	TCNNGA	4 cut(s)	177, 284, 296, 365
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	101, 513
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	8 cut(s)	98, 146, 287, 293, 299, 405, 495, 505
HspAI	GCGC	2 cut(s)	499, 505
Ksp22I	TGATCA	2 cut(s)	280, 292
Kzo9I	GATC	4 cut(s)	55, 280, 292, 361
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	4 cut(s)	57, 282, 294, 363
MboI	GATC	4 cut(s)	55, 280, 292, 361
MfeI	CAATTG	1 cut(s)	550
MluCI	AATT	3 cut(s)	514, 526, 550
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	6 cut(s)	197, 420, 476, 532, 535, 557
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	3 cut(s)	288, 294, 490
MspR9I	CCNGG	3 cut(s)	110, 166, 236
MunI	CAATTG	1 cut(s)	550
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	3 cut(s)	110, 166, 236
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	4 cut(s)	55, 280, 292, 361
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	8 cut(s)	98, 146, 287, 293, 299, 405, 495, 505
NlaIV	GGNNCC	2 cut(s)	240, 566
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	505
PagI	TCATGA	2 cut(s)	283, 295
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	26, 50
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	564
Psp6I	CCWGG	3 cut(s)	108, 164, 234
PspGI	CCWGG	3 cut(s)	108, 164, 234
PspN4I	GGNNCC	2 cut(s)	240, 566
PspPI	GGNCC	3 cut(s)	191, 544, 564
PspPPI	RGGWCCY	1 cut(s)	564
RseI	CAYNNNNRTG	3 cut(s)	288, 294, 490
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	4 cut(s)	55, 280, 292, 361
Sau96I	GGNCC	3 cut(s)	191, 544, 564
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	3 cut(s)	110, 166, 236
SetI	ASST	3 cut(s)	21, 93, 189
SfcI	CTRYAG	2 cut(s)	30, 195
SinI	GGWCC	1 cut(s)	564
SmiMI	CAYNNNNRTG	3 cut(s)	288, 294, 490
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	3 cut(s)	514, 526, 550
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	3 cut(s)	108, 164, 234
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	524
TasI	AATT	3 cut(s)	514, 526, 550
TfiI	GAWTC	2 cut(s)	26, 50
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	7 cut(s)	17, 83, 212, 264, 276, 393, 480
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	564
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	505
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.