Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Forward (+)

3760560 .. 3762257

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG044800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGAAGTGTGAGCTGTGTGATTCTATGGCAAAGATGTACTGTGAATCAGATCAGGCTAGTCTGTGTTGGGATTGTGACATCAAGGTTCATGGTGCAAACTTCTTGGTGGCGAAGCATTTAAGGACTCTGCTCTGCCATGTCTGTCAATCTCTAACCCCATGGAATGCCTCTGGACCCAAGCTTGGTCATACTGTTTCAGTTTGTGAGAATTGTGTGAACAGTTCTAACAAGGAGTCCACAAATGAAGAAGAAGAAGAAGAACATGATGATGATGATCATGAAGAAAATAGCATTGGAGAAGATGATGAACATGATGGTGGTGGTGGCGACAATGGCGCTGATGATAACGATGGTGGTAATGATGATGATGATGAGGAGAATCAAGTTGTTCCATGGTCATCCAGCTCTTCTACTCCACCGGACTCAAGTTCTTTAAGTGATGAAGAATGTTGCCATGAAAGCTTCTCAGAAACAAGATCATCATATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

164

Amino Acids

17.95

Weight (kDa)

4.09

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 40	3.4e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	4 cut(s)	16, 184, 408, 465
AluI	AGCT	4 cut(s)	16, 184, 408, 465
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	176
BccI	CCATC	2 cut(s)	311, 347
BclI	TGATCA	1 cut(s)	277
BfaI	CTAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	161, 395
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	161, 395
BseGI	GGATG	1 cut(s)	401
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	483
BseRI	GAGGAG	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	52, 277, 479
Bsp19I	CCATGG	2 cut(s)	161, 395
BspCNI	CTCAG	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	161, 395
BssMI	GATC	3 cut(s)	52, 277, 479
BssT1I	CCWWGG	2 cut(s)	161, 395
Bst4CI	ACNGT	3 cut(s)	44, 196, 224
Bst6I	CTCTTC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	469
BstDSI	CCRYGG	2 cut(s)	161, 395
BstF5I	GGATG	1 cut(s)	401
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	55, 280, 482
BstMBI	GATC	3 cut(s)	52, 277, 479
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 462
BtgI	CCRYGG	2 cut(s)	161, 395
BtsCI	GGATG	1 cut(s)	401
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	8 cut(s)	92, 140, 162, 266, 281, 314, 396, 458
CviJI	RGCY	5 cut(s)	16, 59, 184, 408, 465
CviKI_1	RGCY	5 cut(s)	16, 59, 184, 408, 465
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	3 cut(s)	54, 279, 481
DpnII	GATC	3 cut(s)	52, 277, 479
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	161, 395
Eco47I	GGWCC	1 cut(s)	176
EcoT14I	CCWWGG	2 cut(s)	161, 395
ErhI	CCWWGG	2 cut(s)	161, 395
FaeI	CATG	8 cut(s)	95, 143, 165, 269, 284, 317, 399, 461
FatI	CATG	8 cut(s)	91, 139, 161, 265, 280, 313, 395, 457
FbaI	TGATCA	1 cut(s)	277
FokI	GGATG	1 cut(s)	388
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	340
HaeII	RGCGCY	1 cut(s)	342
HapII	CCGG	1 cut(s)	422
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	8 cut(s)	95, 143, 165, 269, 284, 317, 399, 461
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HindIII	AAGCTT	2 cut(s)	182, 463
HinfI	GANTC	6 cut(s)	23, 47, 127, 236, 382, 425
HpaII	CCGG	1 cut(s)	422
Hpy166II	GTNNAC	2 cut(s)	220, 240
Hpy188I	TCNGA	2 cut(s)	52, 472
Hpy188III	TCNNGA	2 cut(s)	174, 281
Hpy8I	GTNNAC	2 cut(s)	220, 240
HpyCH4III	ACNGT	3 cut(s)	44, 196, 224
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 462
HpyF3I	CTNAG	1 cut(s)	469
Hsp92II	CATG	8 cut(s)	95, 143, 165, 269, 284, 317, 399, 461
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	52, 277, 479
LguI	GCTCTTC	1 cut(s)	415
LpnPI	CCDG	4 cut(s)	41, 159, 418, 435
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	54, 279, 481
MboI	GATC	3 cut(s)	52, 277, 479
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	3 cut(s)	121, 245, 419
MnlI	CCTC	2 cut(s)	181, 370
MseI	TTAA	2 cut(s)	122, 437
MslI	CAYNNNNRTG	2 cut(s)	270, 318
MspI	CCGG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	336, 462
NcoI	CCATGG	2 cut(s)	161, 395
NdeII	GATC	3 cut(s)	52, 277, 479
NlaIII	CATG	8 cut(s)	95, 143, 165, 269, 284, 317, 399, 461
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	415
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	23, 47, 382
PleI	GAGTC	3 cut(s)	121, 244, 419
PpsI	GAGTC	3 cut(s)	121, 244, 419
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	270, 318
SapI	GCTCTTC	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	122, 437
Sau3AI	GATC	3 cut(s)	52, 277, 479
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	3 cut(s)	121, 245, 419
SetI	ASST	5 cut(s)	18, 90, 186, 410, 467
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	270, 318
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	161, 395
TaaI	ACNGT	3 cut(s)	44, 196, 224
TasI	AATT	1 cut(s)	211
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	23, 47, 382
Tru1I	TTAA	2 cut(s)	122, 437
Tru9I	TTAA	2 cut(s)	122, 437
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	7 cut(s)	17, 80, 261, 297, 324, 459, 474
VpaK11BI	GGWCC	1 cut(s)	176
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.