Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

14224305 .. 14225858

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21230.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGATGAAGGCGTGCGAGCTGTGTGGAGTGAGAGCTCGGATGTACTGCGAGGCGGACAGGGCGAGTTTATGCTGGGACTGCGACGGGAAAGTTCACGGAGCTAACTTTCTGGTGGCGAAGCATCCGAGAGTGCTGCTCTGCCACGTGTGCCAGTTGAAGACGCCGTGGACGAGTTGCGGAGCCAAGCTGACGCCGACGGTGTCGGTCTGTGAGAGTTGCGTGGGAAGGAGGAGTAAGATTGAGGTGAACGAGGAGCAAGAAAGCGAGGCAGATAATGAAGAAAAAGAAGAAGGAGAAGAAGGAGAAGAAGATTATGATGATGATGAAGAAGATGAAGTAGATGAGGATGTTGAGGATGATGATGAGGAGGATGAGAACCAGGTGGTTCCATGGTCGTGCTGTTACTCGCCGGAACAGCTTCCACCAGCGGCGAGTGGTTCGGATAGTGAAGCCGAGGTTTCGGTGTCGACGAAGCGACTACGAGAGAATGTAGATTTGGATTGTTCTGATGATGAGGTAGGGTTTGACGGGACGGCGTCGTTTGGTGGTTCATTAAGACCGTTGAAACGACCGAAACTAGGTGAAGAGAGCAATGGTGACGGAGATGATGGCGGTGAATCGGAGTGGAGAGCAACGGCGATCGTGAGCTCTATTCAGAGGCTGGAAAACGAAGTGATCCACGGTGGCGGTCATGCATCCGCCGCGGTTCTTAGGATTTGCAAACTTAGCAGAGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

248

Amino Acids

27.11

Weight (kDa)

4.32

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 45	1.4e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	470
AccII	CGCG	1 cut(s)	707
AciI	CCGC	8 cut(s)	56, 180, 431, 615, 690, 702, 705, 707
AclWI	GGATC	1 cut(s)	673
AcvI	CACGTG	1 cut(s)	148
AcyI	GRCGYC	3 cut(s)	164, 194, 539
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	581
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	160, 568
AjnI	CCWGG	1 cut(s)	381
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	6 cut(s)	22, 38, 104, 190, 421, 651
AluI	AGCT	6 cut(s)	22, 38, 104, 190, 421, 651
Alw21I	GWGCWC	2 cut(s)	40, 653
AlwI	GGATC	1 cut(s)	673
AlwNI	CAGNNNCTG	1 cut(s)	664
ApeKI	GCWGC	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	420
AsuHPI	GGTGA	4 cut(s)	259, 596, 611, 629
BanII	GRGCYC	2 cut(s)	40, 653
BbrPI	CACGTG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	2 cut(s)	40, 653
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	605
BceAI	ACGGC	3 cut(s)	151, 552, 654
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	581
BisI	GCNGC	3 cut(s)	137, 432, 705
BlsI	GCNGC	3 cut(s)	138, 433, 706
Bme1390I	CCNGG	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	184, 390
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	133, 707
BpiI	GAAGAC	1 cut(s)	167
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BsaAI	YACGTR	1 cut(s)	148
BsaHI	GRCGYC	3 cut(s)	164, 194, 539
BsaJI	CCNNGG	5 cut(s)	167, 392, 456, 682, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	5 cut(s)	167, 392, 456, 682, 705
BseGI	GGATG	6 cut(s)	48, 124, 355, 364, 379, 698
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	601
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	3 cut(s)	247, 269, 383
BseXI	GCAGC	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	707
Bsh1285I	CGRYCG	2 cut(s)	575, 645
BsiEI	CGRYCG	2 cut(s)	575, 645
BsiHKAI	GWGCWC	2 cut(s)	40, 653
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	2 cut(s)	92, 547
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmFI	GGGAC	2 cut(s)	92, 547
Bsp1286I	GDGCHC	2 cut(s)	40, 653
Bsp143I	GATC	2 cut(s)	642, 678
Bsp19I	CCATGG	1 cut(s)	392
BspACI	CCGC	8 cut(s)	56, 180, 431, 615, 690, 702, 705, 707
BspFNI	CGCG	1 cut(s)	707
BspLI	GGNNCC	2 cut(s)	184, 390
BspPI	GGATC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	5 cut(s)	167, 392, 456, 682, 705
BssMI	GATC	2 cut(s)	642, 678
BssNI	GRCGYC	3 cut(s)	164, 194, 539
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	3 cut(s)	202, 564, 686
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	3 cut(s)	164, 194, 539
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	16, 20
BstDEI	CTNAG	2 cut(s)	713, 728
BstDSI	CCRYGG	4 cut(s)	167, 392, 682, 705
BstF5I	GGATG	6 cut(s)	48, 124, 355, 364, 379, 698
BstFNI	CGCG	1 cut(s)	707
BstKTI	GATC	2 cut(s)	645, 681
BstMBI	GATC	2 cut(s)	642, 678
BstMCI	CGRYCG	2 cut(s)	575, 645
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 81, 150, 418, 704, 729
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	167
BtgI	CCRYGG	4 cut(s)	167, 392, 682, 705
BtsCI	GGATG	6 cut(s)	48, 124, 355, 364, 379, 698
Cac8I	GCNNGC	2 cut(s)	16, 20
CaiI	CAGNNNCTG	1 cut(s)	664
Cfr42I	CCGCGG	1 cut(s)	708
CseI	GACGC	3 cut(s)	172, 202, 528
CsiI	ACCWGGT	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	393, 695
CviJI	RGCY	9 cut(s)	22, 38, 104, 185, 190, 421, 455, 651, 664
CviKI_1	RGCY	9 cut(s)	22, 38, 104, 185, 190, 421, 455, 651, 664
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	713, 728
DpnI	GATC	2 cut(s)	644, 680
DpnII	GATC	2 cut(s)	642, 678
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	2 cut(s)	71, 691
Ecl136II	GAGCTC	2 cut(s)	38, 651
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	2 cut(s)	40, 653
Eco53kI	GAGCTC	2 cut(s)	38, 651
Eco72I	CACGTG	1 cut(s)	148
EcoICRI	GAGCTC	2 cut(s)	38, 651
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	2 cut(s)	40, 653
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	2 cut(s)	396, 698
FaiI	YATR	4 cut(s)	73, 318, 394, 696
FaqI	GGGAC	2 cut(s)	92, 547
FatI	CATG	2 cut(s)	392, 694
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	3 cut(s)	137, 432, 705
FokI	GGATG	6 cut(s)	55, 111, 362, 371, 386, 685
FriOI	GRGCYC	2 cut(s)	40, 653
Fsp4HI	GCNGC	3 cut(s)	137, 432, 705
FspBI	CTAG	1 cut(s)	581
GluI	GCNGC	3 cut(s)	137, 432, 705
GsaI	CCCAGC	1 cut(s)	79
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	3 cut(s)	172, 202, 528
Hin1I	GRCGYC	3 cut(s)	164, 194, 539
Hin1II	CATG	2 cut(s)	396, 698
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	1 cut(s)	620
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	4 cut(s)	259, 596, 611, 629
Hpy166II	GTNNAC	4 cut(s)	97, 171, 250, 471
Hpy188I	TCNGA	6 cut(s)	42, 129, 445, 511, 625, 660
Hpy188III	TCNNGA	1 cut(s)	646
Hpy8I	GTNNAC	4 cut(s)	97, 171, 250, 471
Hpy99I	CGWCG	4 cut(s)	89, 202, 475, 544
HpyAV	CCTTC	4 cut(s)	4, 222, 287, 296
HpyCH4III	ACNGT	3 cut(s)	202, 564, 686
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	698, 723
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 81, 150, 418, 704, 729
HpyF3I	CTNAG	2 cut(s)	713, 728
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	3 cut(s)	164, 194, 539
Hsp92II	CATG	2 cut(s)	396, 698
KspI	CCGCGG	1 cut(s)	708
Kzo9I	GATC	2 cut(s)	642, 678
LmnI	GCTCC	3 cut(s)	101, 182, 256
LpnPI	CCDG	9 cut(s)	46, 61, 98, 167, 368, 395, 426, 441, 650
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	2 cut(s)	133, 707
MabI	ACCWGGT	1 cut(s)	381
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	404, 599
MalI	GATC	2 cut(s)	644, 680
MboI	GATC	2 cut(s)	642, 678
MhlI	GDGCHC	2 cut(s)	40, 653
Mph1103I	ATGCAT	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	397
MspA1I	CMGCKG	2 cut(s)	431, 707
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	6 cut(s)	62, 81, 150, 418, 704, 729
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	2 cut(s)	642, 678
NlaIII	CATG	2 cut(s)	396, 698
NlaIV	GGNNCC	2 cut(s)	184, 390
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	599
NsiI	ATGCAT	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	2 cut(s)	170, 470
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	620
PflFI	GACNNNGTC	2 cut(s)	202, 538
PkrI	GCNGC	3 cut(s)	138, 433, 706
Ple19I	CGATCG	1 cut(s)	645
PmaCI	CACGTG	1 cut(s)	148
PmlI	CACGTG	1 cut(s)	148
Ppu21I	YACGTR	1 cut(s)	148
Psp124BI	GAGCTC	2 cut(s)	40, 653
Psp6I	CCWGG	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	184, 390
PstNI	CAGNNNCTG	1 cut(s)	664
PsyI	GACNNNGTC	2 cut(s)	202, 538
PvuI	CGATCG	1 cut(s)	645
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	397
SacI	GAGCTC	2 cut(s)	40, 653
SacII	CCGCGG	1 cut(s)	708
SalI	GTCGAC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	3 cut(s)	137, 432, 705
Sau3AI	GATC	2 cut(s)	642, 678
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	2 cut(s)	40, 653
SexAI	ACCWGGT	1 cut(s)	381
SfaNI	GCATC	2 cut(s)	133, 707
Sfr303I	CCGCGG	1 cut(s)	708
SgrBI	CCGCGG	1 cut(s)	708
SmiMI	CAYNNNNRTG	1 cut(s)	397
SsiI	CCGC	8 cut(s)	56, 180, 431, 615, 690, 702, 705, 707
SspMI	CTAG	1 cut(s)	581
SstI	GAGCTC	2 cut(s)	40, 653
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	3 cut(s)	202, 564, 686
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	470
TaqII	GACCGA	2 cut(s)	196, 589
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	2 cut(s)	434, 707
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	6 cut(s)	17, 23, 294, 342, 351, 543
TspGWI	ACGGA	2 cut(s)	114, 618
Tth111I	GACNNNGTC	2 cut(s)	202, 538
XmiI	GTMKAC	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.