Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Forward (+)

23723983 .. 23724489

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGAGAGTGCGAACTTTGCGGAGTTCGGGCGCGGGTTCACTGCGAGGCGGACCAGGCGAGGCTGTGCTGGGACTGCGACGGGAAGGTTCACGGAGCTAACTTTCTGGTGGCGAAGCATCCAAGGAGCCTCCTCTGCCACGGATGCCAGTCGCTGACGCCGTGGACGGGGTCGGGTTCCAAGCTCACGCCGACGGTCTCTGTCTGCGAGACATGCGTGGAACGCCGCGGGAGTAAGTTCGAGCGGCGGGGGGAGGTTCAAGAAAGCGAAGCGGAGAATGACGGCGATGATGATGACGAGGAGGAGGATGATGACGATGATGATTGTGACGAGAGTGATGAAGATGAGAATCAGGTGGTTCCATGGTCGTGTTGTTCGTATTCGGCCGCGGAGCCTCCGCTGGTGGCTAGTTGTTCGAGCAGTAAAGAAGAGGAAGAGGAAGAGGAATATTCGGTGTCGAAGCGAATGCGTGGGACTTCACCTTTGAAGAATGACATATATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

169

Amino Acids

18.74

Weight (kDa)

4.33

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	244
AccII	CGCG	3 cut(s)	34, 228, 389
AcoI	YGGCCR	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	260, 487
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	2 cut(s)	98, 184
AluI	AGCT	2 cut(s)	98, 184
Alw26I	GTCTC	2 cut(s)	202, 203
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	384
ArsI	GACNNNNNNTTYG	2 cut(s)	466, 498
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	471
AvaII	GGWCC	1 cut(s)	52
BceAI	ACGGC	2 cut(s)	145, 298
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	202, 203
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	226, 245, 387
BlsI	GCNGC	3 cut(s)	227, 246, 388
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	4 cut(s)	128, 178, 360, 393
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	127, 134
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	6 cut(s)	122, 139, 161, 226, 362, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	6 cut(s)	122, 139, 161, 226, 362, 387
BseGI	GGATG	3 cut(s)	118, 149, 313
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	3 cut(s)	122, 314, 317
BseX3I	CGGCCG	1 cut(s)	384
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	3 cut(s)	34, 228, 389
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	386
BsiEI	CGRYCG	1 cut(s)	387
BslFI	GGGAC	2 cut(s)	86, 487
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	202, 203
BsmFI	GGGAC	2 cut(s)	86, 487
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	202
Bsp19I	CCATGG	1 cut(s)	362
BspANI	GGCC	1 cut(s)	386
BspFNI	CGCG	3 cut(s)	34, 228, 389
BspLI	GGNNCC	4 cut(s)	128, 178, 360, 393
BspTNI	GGTCTC	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	6 cut(s)	122, 139, 161, 226, 362, 387
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	122, 362
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	3 cut(s)	423, 429, 435
BstACI	GRCGYC	1 cut(s)	158
BstDSI	CCRYGG	5 cut(s)	139, 161, 226, 362, 387
BstF5I	GGATG	3 cut(s)	118, 149, 313
BstFNI	CGCG	3 cut(s)	34, 228, 389
BstHHI	GCGC	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	202, 203
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 56, 75, 135, 144, 213, 222
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	54
BstUI	CGCG	3 cut(s)	34, 228, 389
BstZI	CGGCCG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	386
BtgI	CCRYGG	5 cut(s)	139, 161, 226, 362, 387
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	118, 149, 313
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	154
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	52
Cfr42I	CCGCGG	2 cut(s)	229, 390
CseI	GACGC	1 cut(s)	166
CviAII	CATG	2 cut(s)	213, 363
CviJI	RGCY	7 cut(s)	64, 98, 129, 184, 386, 394, 407
CviKI_1	RGCY	7 cut(s)	64, 98, 129, 184, 386, 394, 407
EaeI	YGGCCR	1 cut(s)	384
EagI	CGGCCG	1 cut(s)	384
Eam1104I	CTCTTC	3 cut(s)	423, 429, 435
EarI	CTCTTC	3 cut(s)	423, 429, 435
EciI	GGCGGA	1 cut(s)	65
EclXI	CGGCCG	1 cut(s)	384
Eco130I	CCWWGG	2 cut(s)	122, 362
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	52
Eco52I	CGGCCG	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	122, 362
ErhI	CCWWGG	2 cut(s)	122, 362
FaeI	CATG	2 cut(s)	216, 366
FaiI	YATR	5 cut(s)	214, 364, 497, 499, 505
FaqI	GGGAC	2 cut(s)	86, 487
FatI	CATG	2 cut(s)	212, 362
FauI	CCCGC	3 cut(s)	27, 221, 240
Fnu4HI	GCNGC	3 cut(s)	226, 245, 387
FokI	GGATG	3 cut(s)	105, 156, 320
Fsp4HI	GCNGC	3 cut(s)	226, 245, 387
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	3 cut(s)	226, 245, 387
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	386
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	216, 366
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	1 cut(s)	471
Hpy166II	GTNNAC	3 cut(s)	40, 91, 165
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	3 cut(s)	40, 91, 165
Hpy99I	CGWCG	2 cut(s)	83, 196
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 56, 75, 135, 144, 213, 222
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	2 cut(s)	216, 366
HspAI	GCGC	1 cut(s)	32
KspI	CCGCGG	2 cut(s)	229, 390
LmnI	GCTCC	3 cut(s)	95, 126, 391
LpnPI	CCDG	7 cut(s)	41, 55, 68, 92, 161, 338, 386
LweI	GCATC	2 cut(s)	127, 134
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	326
MbiI	CCGCTC	1 cut(s)	244
MboII	GAAGA	5 cut(s)	353, 440, 446, 452, 499
MslI	CAYNNNNRTG	1 cut(s)	367
MspA1I	CMGCKG	3 cut(s)	228, 389, 400
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	3 cut(s)	34, 228, 389
MwoI	GCNNNNNNNGC	7 cut(s)	18, 56, 75, 135, 144, 213, 222
NcoI	CCATGG	1 cut(s)	362
NlaIII	CATG	2 cut(s)	216, 366
NlaIV	GGNNCC	4 cut(s)	128, 178, 360, 393
NmuCI	GTSAC	1 cut(s)	326
NspI	RCATGY	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 374
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	349
PflFI	GACNNNGTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	227, 246, 388
Psp6I	CCWGG	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	4 cut(s)	128, 178, 360, 393
PspPI	GGNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	154
PsyI	GACNNNGTC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	367
SacII	CCGCGG	2 cut(s)	229, 390
SatI	GCNGC	3 cut(s)	226, 245, 387
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	56
SetI	ASST	6 cut(s)	90, 100, 186, 258, 357, 484
SfaNI	GCATC	2 cut(s)	127, 134
Sfr303I	CCGCGG	2 cut(s)	229, 390
SgrBI	CCGCGG	2 cut(s)	229, 390
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	367
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	2 cut(s)	122, 362
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	3 cut(s)	240, 416, 458
TauI	GCSGC	3 cut(s)	228, 247, 389
TfiI	GAWTC	1 cut(s)	349
TscAI	CASTG	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	354, 492
TspGWI	ACGGA	2 cut(s)	108, 156
TspRI	CASTG	1 cut(s)	47
Tth111I	GACNNNGTC	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	52
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.