Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Forward (+)

3621899 .. 3623066

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28688

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAAGAAGTGTGAGCTGTGTGATTCTATGGCAAAGATGTACTGTGAATCAGATCAGGCTGGTCTGTGTTGGGATTGTGACATCAAGGTTCATGGTGCAAACTTCTTGGTGGCGAAGCATTTAAGGACTCTGCTCTGCCATGTCTGTCAATCTCTAACCCCATGGAATGCCTCTGGACCCAAGCTTGGTCATACTGTTTCAGTTTGTGAGAATTGTGTGAACAGTTCTAACAAGGAGTCCACAAATGAAGAAGAAGAAGAACATGATGATAATGATGATCATGATCATGAAGAAAATAGCATTGGAGAAGATGATGAACATGACGGTGGTGGTGGCGACAATGGCGCTGATGATAACGATGGTGGTAATGATGATGATGATGAGGAGAATCAAGTTGTTCCATGGTCATCTAGCTCTTCTACTCCACCGGACTCAAGTTCTTTAAGTGATGAAGAATGTTGCCATGAAAGCTTCTCAGAAACAAGATCATCTTATCCATGTAAGCGCAGGCGCTACAATGCACTCTTGAATTCTCAAGCACGCAATTTCTTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

185

Amino Acids

20.5

Weight (kDa)

4.34

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 40	1.4e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	4 cut(s)	16, 184, 414, 471
AluI	AGCT	4 cut(s)	16, 184, 414, 471
ApoI	RAATTY	1 cut(s)	529
AspLEI	GCGC	3 cut(s)	347, 507, 513
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	176
BccI	CCATC	1 cut(s)	353
BclI	TGATCA	2 cut(s)	277, 283
BfaI	CTAG	1 cut(s)	411
BfoI	RGCGCY	2 cut(s)	348, 514
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	178
BpuEI	CTTGAG	2 cut(s)	418, 519
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	161, 401
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	161, 401
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	52, 277, 283, 485
Bsp19I	CCATGG	2 cut(s)	161, 401
BspCNI	CTCAG	1 cut(s)	488
BspHI	TCATGA	2 cut(s)	280, 286
BspLI	GGNNCC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	161, 401
BssMI	GATC	4 cut(s)	52, 277, 283, 485
BssT1I	CCWWGG	2 cut(s)	161, 401
Bst4CI	ACNGT	4 cut(s)	44, 196, 224, 326
Bst6I	CTCTTC	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	509, 541
BstDEI	CTNAG	1 cut(s)	475
BstDSI	CCRYGG	2 cut(s)	161, 401
BstH2I	RGCGCY	2 cut(s)	348, 514
BstHHI	GCGC	3 cut(s)	347, 507, 513
BstKTI	GATC	4 cut(s)	55, 280, 286, 488
BstMBI	GATC	4 cut(s)	52, 277, 283, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	342, 468
BtgI	CCRYGG	2 cut(s)	161, 401
Cac8I	GCNNGC	2 cut(s)	509, 541
CciI	TCATGA	2 cut(s)	280, 286
CfoI	GCGC	3 cut(s)	347, 507, 513
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	40
CviJI	RGCY	5 cut(s)	16, 59, 184, 414, 471
CviKI_1	RGCY	5 cut(s)	16, 59, 184, 414, 471
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	475
DpnI	GATC	4 cut(s)	54, 279, 285, 487
DpnII	GATC	4 cut(s)	52, 277, 283, 485
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	161, 401
Eco47I	GGWCC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	529
EcoT14I	CCWWGG	2 cut(s)	161, 401
ErhI	CCWWGG	2 cut(s)	161, 401
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FbaI	TGATCA	2 cut(s)	277, 283
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	3 cut(s)	346, 506, 512
HaeII	RGCGCY	2 cut(s)	348, 514
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	3 cut(s)	347, 507, 513
Hin6I	GCGC	3 cut(s)	345, 505, 511
HinP1I	GCGC	3 cut(s)	345, 505, 511
HindIII	AAGCTT	2 cut(s)	182, 469
HinfI	GANTC	6 cut(s)	23, 47, 127, 236, 388, 431
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	220, 240
Hpy188I	TCNGA	2 cut(s)	52, 478
Hpy188III	TCNNGA	4 cut(s)	174, 281, 287, 526
Hpy8I	GTNNAC	2 cut(s)	220, 240
HpyCH4III	ACNGT	4 cut(s)	44, 196, 224, 326
HpyCH4V	TGCA	2 cut(s)	98, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	342, 468
HpyF3I	CTNAG	1 cut(s)	475
HspAI	GCGC	3 cut(s)	345, 505, 511
Ksp22I	TGATCA	2 cut(s)	277, 283
Kzo9I	GATC	4 cut(s)	52, 277, 283, 485
LguI	GCTCTTC	1 cut(s)	421
LpnPI	CCDG	5 cut(s)	41, 45, 159, 441, 493
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	4 cut(s)	54, 279, 285, 487
MboI	GATC	4 cut(s)	52, 277, 283, 485
MluCI	AATT	3 cut(s)	211, 529, 544
MlyI	GAGTC	3 cut(s)	121, 245, 425
MnlI	CCTC	2 cut(s)	181, 376
MseI	TTAA	2 cut(s)	122, 443
MslI	CAYNNNNRTG	2 cut(s)	285, 324
MspI	CCGG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	342, 468
NcoI	CCATGG	2 cut(s)	161, 401
NdeII	GATC	4 cut(s)	52, 277, 283, 485
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	77
PagI	TCATGA	2 cut(s)	280, 286
PciSI	GCTCTTC	1 cut(s)	421
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	23, 47, 388
PleI	GAGTC	3 cut(s)	121, 244, 425
PpsI	GAGTC	3 cut(s)	121, 244, 425
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	285, 324
SapI	GCTCTTC	1 cut(s)	421
SaqAI	TTAA	2 cut(s)	122, 443
Sau3AI	GATC	4 cut(s)	52, 277, 283, 485
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	3 cut(s)	121, 245, 425
SetI	ASST	6 cut(s)	18, 90, 186, 416, 473, 557
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	285, 324
SmlI	CTYRAG	2 cut(s)	433, 534
SmoI	CTYRAG	2 cut(s)	433, 534
Sse9I	AATT	3 cut(s)	211, 529, 544
SspMI	CTAG	1 cut(s)	411
StyI	CCWWGG	2 cut(s)	161, 401
TaaI	ACNGT	4 cut(s)	44, 196, 224, 326
TasI	AATT	3 cut(s)	211, 529, 544
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	23, 47, 388
Tru1I	TTAA	2 cut(s)	122, 443
Tru9I	TTAA	2 cut(s)	122, 443
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	7 cut(s)	17, 80, 261, 303, 330, 465, 480
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	529
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.