FvH4_6g44270

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001915
Physical Location & Seq
Forward (+)
34125442 .. 34128499
3058 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44270.t1

Sequence Viewer

Length: 759 bp
ATGAAGAACTGCGAGCTCTGCCAGCTACCTGCTCGGACTTACTGCGAATCCGACCAGGCAATTCTCTGCTGGGACTGCGATTTCAAGGTTCACGGCGCCAATTTCCTGGTGGCCAGGCACTCCAGGACGCTCCTCTGCCACGCGTGCCACGCGCCGACGGCCTGGAAAGCCTCCGGCGAGAAGCTCGGCCATACTTTTTCCGTCTGCGAGCGGTGTGTGGCCAGAAACGAAAGCAGAGGCGACGACGAAGAGAGCGAGGCCGGTAATGATGATACGGATGATGATGACCTAGATGAAGATCAGGACTCCGATTCTGACGACGACGACGGCGATCTTGATTTCGATGAGGAAGGTGAGAATCAGGTGGTGCCTTGGGCTTCGACGCCTCCTCCGCCCTCCGCGAGCTCTTCGAGCAGCGAAGGGGCTCACAGTGACGATAGATATGGCCGCCGCTCAGTCGGCGCGGTTTCGTTGAAGCGAACCAGAGATAATGCTTCTGATCTTCGCTCTCATGACGATCTCCGCCGTTTAACCGCACGACTGAGGTGTGAAACAGCTTGCACCGCCCATACCGACGGCGGCGCAACTTCGATTGACTGCAGGATACCTTCAAAAGACCGGAAACTGGATCTTAACGGTTCAGGTCCGAGATTCTCGCTCCCTATTGAATCTCTGAGGAGAAATTTCCGGCAAAATGACCGTAAACTCAGCGAAGCCGTCGATCTTGACTCCTCCGAGCCTCGTATCCCTCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

253

Amino Acids

27.9

Weight (kDa)

4.71

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 2 - 43 8.2e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 2 cut(s) 95, 367
AccBSI CCGCTC 2 cut(s) 211, 453
AccII CGCG 4 cut(s) 143, 152, 401, 464
AclWI GGATC 1 cut(s) 636
AcoI YGGCCR 4 cut(s) 111, 187, 219, 445
AcsI RAATTY 1 cut(s) 682
AcyI GRCGYC 2 cut(s) 96, 383
AfiI CCNNNNNNNGG 1 cut(s) 625
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 4 cut(s) 85, 475, 612, 668
AjnI CCWGG 5 cut(s) 54, 105, 113, 122, 161
AluBI AGCT 5 cut(s) 16, 25, 184, 405, 557
AluI AGCT 5 cut(s) 16, 25, 184, 405, 557
Alw21I GWGCWC 2 cut(s) 18, 407
AlwI GGATC 1 cut(s) 636
AoxI GGCC 6 cut(s) 111, 159, 187, 219, 258, 445
ApeKI GCWGC 1 cut(s) 414
ApoI RAATTY 1 cut(s) 682
AspLEI GCGC 4 cut(s) 98, 154, 464, 584
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 1 cut(s) 644
BalI TGGCCA 2 cut(s) 113, 221
BanI GGYRCC 2 cut(s) 95, 367
BanII GRGCYC 3 cut(s) 18, 407, 427
Bbv12I GWGCWC 2 cut(s) 18, 407
BbvI GCAGC 1 cut(s) 426
BceAI ACGGC 6 cut(s) 109, 174, 343, 510, 592, 701
BciT130I CCWGG 5 cut(s) 56, 107, 115, 124, 163
BciVI GTATCC 2 cut(s) 597, 755
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 598
BfoI RGCGCY 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 37
BfuI GTATCC 2 cut(s) 597, 755
BisI GCNGC 4 cut(s) 415, 448, 451, 580
BlsI GCNGC 4 cut(s) 416, 449, 452, 581
Bme1390I CCNGG 5 cut(s) 56, 107, 115, 124, 163
Bme18I GGWCC 1 cut(s) 644
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 97, 369
BmrFI CCNGG 5 cut(s) 56, 107, 115, 124, 163
BpmI CTGGAG 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 297
BsaHI GRCGYC 2 cut(s) 96, 383
BsaJI CCNNGG 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 618
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 625
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 630
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 5 cut(s) 56, 107, 115, 124, 163
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 625
BseMII CTCAG 4 cut(s) 468, 533, 665, 721
BseNI ACTGG 1 cut(s) 630
BseRI GAGGAG 4 cut(s) 122, 378, 691, 721
BseXI GCAGC 1 cut(s) 426
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 4 cut(s) 143, 152, 401, 464
BshFI GGCC 6 cut(s) 113, 161, 189, 221, 260, 447
BshNI GGYRCC 2 cut(s) 95, 367
BsiHKAI GWGCWC 2 cut(s) 18, 407
BsiSI CCGG 4 cut(s) 174, 261, 619, 688
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 6 cut(s) 113, 161, 189, 221, 260, 447
Bsp1286I GDGCHC 3 cut(s) 18, 407, 427
Bsp143I GATC 6 cut(s) 298, 331, 499, 517, 628, 721
BspANI GGCC 6 cut(s) 113, 161, 189, 221, 260, 447
BspCNI CTCAG 4 cut(s) 467, 534, 666, 720
BspFNI CGCG 4 cut(s) 143, 152, 401, 464
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 97, 369
BspMAI CTGCAG 1 cut(s) 602
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 1 cut(s) 636
BspQI GCTCTTC 1 cut(s) 412
BspT107I GGYRCC 2 cut(s) 95, 367
BsrBI CCGCTC 2 cut(s) 211, 453
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 630
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 6 cut(s) 298, 331, 499, 517, 628, 721
BssNI GRCGYC 2 cut(s) 96, 383
BssT1I CCWWGG 1 cut(s) 371
Bst2UI CCWGG 5 cut(s) 56, 107, 115, 124, 163
Bst4CI ACNGT 3 cut(s) 431, 638, 701
Bst6I CTCTTC 2 cut(s) 243, 412
BstACI GRCGYC 2 cut(s) 96, 383
BstC8I GCNNGC 6 cut(s) 14, 23, 145, 209, 403, 559
BstDEI CTNAG 4 cut(s) 454, 542, 674, 707
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 4 cut(s) 143, 152, 401, 464
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 4 cut(s) 98, 154, 464, 584
BstKTI GATC 6 cut(s) 301, 334, 502, 520, 631, 724
BstMBI GATC 6 cut(s) 298, 331, 499, 517, 628, 721
BstNI CCWGG 5 cut(s) 56, 107, 115, 124, 163
BstSCI CCNGG 5 cut(s) 54, 105, 113, 122, 161
BstSFI CTRYAG 1 cut(s) 598
BstUI CGCG 4 cut(s) 143, 152, 401, 464
BstV1I GCAGC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 628
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 628
BsuI GTATCC 2 cut(s) 597, 755
BsuRI GGCC 6 cut(s) 113, 161, 189, 221, 260, 447
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 436
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 6 cut(s) 14, 23, 145, 209, 403, 559
CciI TCATGA 1 cut(s) 511
CfoI GCGC 4 cut(s) 98, 154, 464, 584
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 644
CseI GACGC 2 cut(s) 136, 391
CviAII CATG 1 cut(s) 512
DdeI CTNAG 4 cut(s) 454, 542, 674, 707
DinI GGCGCC 1 cut(s) 97
DpnI GATC 6 cut(s) 300, 333, 501, 519, 630, 723
DpnII GATC 6 cut(s) 298, 331, 499, 517, 628, 721
EaeI YGGCCR 4 cut(s) 111, 187, 219, 445
Eam1104I CTCTTC 2 cut(s) 243, 412
EarI CTCTTC 2 cut(s) 243, 412
EciI GGCGGA 2 cut(s) 381, 512
Ecl136II GAGCTC 2 cut(s) 16, 405
Eco130I CCWWGG 1 cut(s) 371
Eco24I GRGCYC 3 cut(s) 18, 407, 427
Eco47I GGWCC 1 cut(s) 644
Eco53kI GAGCTC 2 cut(s) 16, 405
EcoICRI GAGCTC 2 cut(s) 16, 405
EcoRII CCWGG 5 cut(s) 54, 105, 113, 122, 161
EcoT14I CCWWGG 1 cut(s) 371
EcoT38I GRGCYC 3 cut(s) 18, 407, 427
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 1 cut(s) 515
FaiI YATR 5 cut(s) 192, 444, 513, 570, 757
FaqI GGGAC 1 cut(s) 86
FatI CATG 1 cut(s) 511
Fnu4HI GCNGC 4 cut(s) 415, 448, 451, 580
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 3 cut(s) 18, 407, 427
Fsp4HI GCNGC 4 cut(s) 415, 448, 451, 580
FspBI CTAG 1 cut(s) 290
GlaI GCGC 4 cut(s) 97, 153, 463, 583
GluI GCNGC 4 cut(s) 415, 448, 451, 580
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 6 cut(s) 113, 161, 189, 221, 260, 447
HapII CCGG 4 cut(s) 174, 261, 619, 688
HgaI GACGC 2 cut(s) 136, 391
HhaI GCGC 4 cut(s) 98, 154, 464, 584
Hin1I GRCGYC 2 cut(s) 96, 383
Hin1II CATG 1 cut(s) 515
Hin6I GCGC 4 cut(s) 96, 152, 462, 582
HinP1I GCGC 4 cut(s) 96, 152, 462, 582
HinfI GANTC 7 cut(s) 47, 305, 311, 358, 651, 668, 728
HpaII CCGG 4 cut(s) 174, 261, 619, 688
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 2 cut(s) 91, 704
Hpy188I TCNGA 9 cut(s) 36, 52, 310, 316, 499, 648, 675, 736, 753
Hpy188III TCNNGA 4 cut(s) 302, 335, 512, 725
Hpy8I GTNNAC 2 cut(s) 91, 704
Hpy99I CGWCG 9 cut(s) 160, 245, 248, 323, 326, 329, 385, 578, 722
HpyAV CCTTC 3 cut(s) 344, 413, 618
HpyCH4III ACNGT 3 cut(s) 431, 638, 701
HpyCH4V TGCA 2 cut(s) 561, 600
HpyF3I CTNAG 4 cut(s) 454, 542, 674, 707
Hsp92I GRCGYC 2 cut(s) 96, 383
Hsp92II CATG 1 cut(s) 515
HspAI GCGC 4 cut(s) 96, 152, 462, 582
KasI GGCGCC 1 cut(s) 95
Kzo9I GATC 6 cut(s) 298, 331, 499, 517, 628, 721
LguI GCTCTTC 1 cut(s) 412
LmnI GCTCC 2 cut(s) 135, 663
Lsp1109I GCAGC 1 cut(s) 426
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 431
MalI GATC 6 cut(s) 300, 333, 501, 519, 630, 723
MbiI CCGCTC 2 cut(s) 211, 453
MboI GATC 6 cut(s) 298, 331, 499, 517, 628, 721
MboII GAAGA 5 cut(s) 16, 260, 308, 399, 494
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 3 cut(s) 18, 407, 427
MlsI TGGCCA 2 cut(s) 113, 221
MluCI AATT 3 cut(s) 60, 100, 682
MluI ACGCGT 1 cut(s) 141
MluNI TGGCCA 2 cut(s) 113, 221
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 2 cut(s) 299, 722
MmeI TCCRAC 1 cut(s) 75
Mox20I TGGCCA 2 cut(s) 113, 221
MscI TGGCCA 2 cut(s) 113, 221
MseI TTAA 2 cut(s) 530, 633
Msp20I TGGCCA 2 cut(s) 113, 221
MspI CCGG 4 cut(s) 174, 261, 619, 688
MspR9I CCNGG 5 cut(s) 56, 107, 115, 124, 163
MvaI CCWGG 5 cut(s) 56, 107, 115, 124, 163
MvnI CGCG 4 cut(s) 143, 152, 401, 464
NarI GGCGCC 1 cut(s) 96
NdeII GATC 6 cut(s) 298, 331, 499, 517, 628, 721
NlaIII CATG 1 cut(s) 515
NlaIV GGNNCC 2 cut(s) 97, 369
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 431
PagI TCATGA 1 cut(s) 511
PciSI GCTCTTC 1 cut(s) 412
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 327
PfeI GAWTC 5 cut(s) 47, 311, 358, 651, 668
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 4 cut(s) 416, 449, 452, 581
PleI GAGTC 2 cut(s) 299, 722
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 2 cut(s) 299, 722
Psp124BI GAGCTC 2 cut(s) 18, 407
Psp6I CCWGG 5 cut(s) 54, 105, 113, 122, 161
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 5 cut(s) 54, 105, 113, 122, 161
PspN4I GGNNCC 2 cut(s) 97, 369
PspPI GGNCC 1 cut(s) 644
PstI CTGCAG 1 cut(s) 602
PsuI RGATCY 1 cut(s) 628
SacI GAGCTC 2 cut(s) 18, 407
SapI GCTCTTC 1 cut(s) 412
SaqAI TTAA 2 cut(s) 530, 633
SatI GCNGC 4 cut(s) 415, 448, 451, 580
Sau3AI GATC 6 cut(s) 298, 331, 499, 517, 628, 721
Sau96I GGNCC 1 cut(s) 644
SchI GAGTC 2 cut(s) 299, 722
ScrFI CCNGG 5 cut(s) 56, 107, 115, 124, 163
SduI GDGCHC 3 cut(s) 18, 407, 427
SfcI CTRYAG 1 cut(s) 598
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 1 cut(s) 644
Sse9I AATT 3 cut(s) 60, 100, 682
SspDI GGCGCC 1 cut(s) 95
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 2 cut(s) 18, 407
StyD4I CCNGG 5 cut(s) 54, 105, 113, 122, 161
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 3 cut(s) 431, 638, 701
TaqI TCGA 5 cut(s) 342, 380, 410, 590, 720
TasI AATT 3 cut(s) 60, 100, 682
TauI GCSGC 3 cut(s) 450, 453, 582
TfiI GAWTC 5 cut(s) 47, 311, 358, 651, 668
Tru1I TTAA 2 cut(s) 530, 633
Tru9I TTAA 2 cut(s) 530, 633
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 17, 309
TspGWI ACGGA 2 cut(s) 190, 290
TspRI CASTG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 644
XapI RAATTY 1 cut(s) 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.