Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

14403172 .. 14404778

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0154900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCTTCCTTCACTCTTAGAGTTGCATTTGTCTGATTGTCATATTAATGTAAACCAGCTTCCACTCTCCCTAGACACCATTAACTTCACATCAATTTTGGTCCTTGATATGTCATATAATGATCTTATCAATTCTTCATTCCCCAGCTCGTTTTCTAATCTCACTAGCCTAAAAGAACTTGATCTCAGTTCGAATTCTTTCAATGGTCCCTTTCTTGATGAATTTTCGAGCCTCAAAAACCTAGAACACCTAGATTTATCTGGGATGAGCCTCAAAGGTCAGATTCCCCATGTCATCAGAAATTTGTGCGAGTTGAAGATACTAAATCTTCGGTGGAACAAGTTTGATGGAGACCTTCAAGAGTTTTTGAATGGTCCTGCTTTTCCTGTTTGGCTTCAATCTCAAACTCAATTAGTTGATGTTCACCTTGAAAATACTGGAATTTCGGGTACAATACCTGAGGAGTGGCTCTTGAAGATATCTTCCCAAGTTGAATCTTTGAATTTACCTAATAATAACATCAGCGGAAAGCTATTGTTCCCACTCAAATTTCCAAAATTAAGTAGACTGAATTTGCTTCATAATCAATTTGAGGGCACATTAGAGCTATTTCCTACTAATGCACCTCTTCTGCAATACTTGGAGCTCTATGATAATCGTTTAAAAGGAAGCATTCCACCTTCTATTTGTGAAATGCAATATATGAAAGTTTTATCTCTAGGAAACAATCGATTATCTGGAGAGCTTCCTCAATCCTGGTGTTCGTGGGGACATATAAATGTTGTGGATGTGGGAAACAACAATCTCTTTGGTAATATTCCGAGTTCAATGGGCATCCTAAGTTCTCTTGGTGTATTGAAGATGAACGACAATGACTTTGGCGGGGAAATTCCTTCTTCCTTGAAAAATTGCTCTGAGTTGACAGATATTGATTTTAGTGGTAACAAACTTACTGGAAACCTACCTTTATGGATTGGATCAGAGCTATCTGGATTACAAATTCTGCTACTGCGATTCAACTTTCTGAGCAGAACTATTCCTCAACAGTTGTGCAATCTCAGAGAACTTCATATCCTAGACCTTGGTCATAATGACTTTTCAGGGACTATTCCCAACTGCTTAAGTAATCTGACTAATCTAGTGTCTGCTGATCCCCTTCCGTATGTCTATGAAAATTACGAAGAGCAAACAACAGTTATCTCGAAAGGAAGAGAACTTCAATATAGCATTGTTCATACTCTGCTTTATGTAATGAGCATTGTGATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

423

Amino Acids

47.39

Weight (kDa)

4.94

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	565
AciI	CCGC	2 cut(s)	525, 882
AclWI	GGATC	2 cut(s)	985, 1145
AcsI	RAATTY	9 cut(s)	193, 221, 301, 441, 502, 548, 571, 888, 999
AfaI	GTAC	1 cut(s)	451
AflII	CTTAAG	1 cut(s)	1120
AjnI	CCWGG	1 cut(s)	755
AloI	GAACNNNNNNTCC	2 cut(s)	1056, 1088
AluBI	AGCT	7 cut(s)	58, 147, 532, 607, 646, 745, 985
AluI	AGCT	7 cut(s)	58, 147, 532, 607, 646, 745, 985
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	985, 1145
ApoI	RAATTY	9 cut(s)	193, 221, 301, 441, 502, 548, 571, 888, 999
ArsI	GACNNNNNNTTYG	2 cut(s)	860, 892
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	100, 206, 374
AsuHPI	GGTGA	1 cut(s)	416
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	3 cut(s)	100, 206, 374
AxyI	CCTNAGG	1 cut(s)	459
BaeGI	GKGCMC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	648
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
Bbv12I	GWGCWC	1 cut(s)	648
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	757
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	7 cut(s)	71, 165, 242, 251, 719, 1076, 1139
BfrI	CTTAAG	1 cut(s)	1120
Bme1390I	CCNGG	1 cut(s)	757
Bme18I	GGWCC	3 cut(s)	100, 206, 374
BmgT120I	GGNCC	3 cut(s)	100, 206, 374
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	757
BmsI	GCATC	1 cut(s)	843
BoxI	GACNNNNGTC	1 cut(s)	1083
BpmI	CTGGAG	1 cut(s)	759
Bpu14I	TTCGAA	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	1081
Bse1I	ACTGG	2 cut(s)	442, 958
Bse21I	CCTNAGG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	757
BseCI	ATCGAT	1 cut(s)	730
BseDI	CCNNGG	1 cut(s)	1081
BseGI	GGATG	3 cut(s)	270, 793, 834
BseMII	CTCAG	5 cut(s)	199, 450, 906, 1016, 1072
BseNI	ACTGG	2 cut(s)	442, 958
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	599
BseYI	CCCAGC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	730
BsiHKAI	GWGCWC	1 cut(s)	648
BslFI	GGGAC	3 cut(s)	192, 783, 1117
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	3 cut(s)	192, 783, 1117
BsmI	GAATGC	1 cut(s)	672
Bso31I	GGTCTC	1 cut(s)	345
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	599, 648
Bsp143I	GATC	4 cut(s)	121, 181, 977, 1150
BspACI	CCGC	2 cut(s)	525, 882
BspCNI	CTCAG	5 cut(s)	198, 451, 907, 1017, 1071
BspDI	ATCGAT	1 cut(s)	730
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	985, 1145
BspQI	GCTCTTC	1 cut(s)	1176
BspT104I	TTCGAA	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	1120
BspTNI	GGTCTC	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	442, 958
BssECI	CCNNGG	1 cut(s)	1081
BssMI	GATC	4 cut(s)	121, 181, 977, 1150
BssT1I	CCWWGG	1 cut(s)	1081
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	2 cut(s)	1047, 1195
Bst6I	CTCTTC	3 cut(s)	633, 1176, 1204
BstAFI	CTTAAG	1 cut(s)	1120
BstBI	TTCGAA	1 cut(s)	191
BstDEI	CTNAG	7 cut(s)	16, 185, 459, 839, 915, 1025, 1058
BstF5I	GGATG	3 cut(s)	270, 793, 834
BstKTI	GATC	4 cut(s)	124, 184, 980, 1153
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	4 cut(s)	121, 181, 977, 1150
BstNI	CCWGG	1 cut(s)	757
BstPAI	GACNNNNGTC	1 cut(s)	1083
BstSCI	CCNGG	1 cut(s)	755
BstSLI	GKGCMC	1 cut(s)	599
Bsu15I	ATCGAT	1 cut(s)	730
Bsu36I	CCTNAGG	1 cut(s)	459
BsuTUI	ATCGAT	1 cut(s)	730
BtsCI	GGATG	3 cut(s)	270, 793, 834
Cfr13I	GGNCC	3 cut(s)	100, 206, 374
ClaI	ATCGAT	1 cut(s)	730
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	1 cut(s)	290
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	7 cut(s)	16, 185, 459, 839, 915, 1025, 1058
DpnI	GATC	4 cut(s)	123, 183, 979, 1152
DpnII	GATC	4 cut(s)	121, 181, 977, 1150
DraI	TTTAAA	1 cut(s)	663
Eam1104I	CTCTTC	3 cut(s)	633, 1176, 1204
EarI	CTCTTC	3 cut(s)	633, 1176, 1204
Ecl136II	GAGCTC	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	1081
Eco24I	GRGCYC	1 cut(s)	648
Eco31I	GGTCTC	1 cut(s)	345
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	3 cut(s)	100, 206, 374
Eco53kI	GAGCTC	1 cut(s)	646
Eco81I	CCTNAGG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	755
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	1081
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	1081
FaeI	CATG	1 cut(s)	293
FaqI	GGGAC	3 cut(s)	192, 783, 1117
FatI	CATG	1 cut(s)	289
FauI	CCCGC	1 cut(s)	875
FblI	GTMKAC	1 cut(s)	565
FokI	GGATG	3 cut(s)	277, 800, 821
FriOI	GRGCYC	1 cut(s)	648
FspBI	CTAG	7 cut(s)	71, 165, 242, 251, 719, 1076, 1139
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	759
Hin1II	CATG	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HinfI	GANTC	3 cut(s)	283, 494, 1014
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	4 cut(s)	52, 424, 566, 921
Hpy188I	TCNGA	9 cut(s)	34, 282, 299, 822, 916, 982, 1026, 1061, 1131
Hpy188III	TCNNGA	6 cut(s)	215, 359, 472, 738, 990, 1201
Hpy8I	GTNNAC	4 cut(s)	52, 424, 566, 921
HpyAV	CCTTC	5 cut(s)	18, 365, 690, 903, 1166
HpyCH4III	ACNGT	2 cut(s)	1047, 1195
HpyCH4V	TGCA	5 cut(s)	25, 623, 634, 697, 1053
HpyF3I	CTNAG	7 cut(s)	16, 185, 459, 839, 915, 1025, 1058
Hsp92II	CATG	1 cut(s)	293
Kzo9I	GATC	4 cut(s)	121, 181, 977, 1150
LguI	GCTCTTC	1 cut(s)	1176
LmnI	GCTCC	1 cut(s)	643
LweI	GCATC	1 cut(s)	843
MaeI	CTAG	7 cut(s)	71, 165, 242, 251, 719, 1076, 1139
MaeIII	GTNAC	1 cut(s)	941
MalI	GATC	4 cut(s)	123, 183, 979, 1152
MboI	GATC	4 cut(s)	121, 181, 977, 1150
MhlI	GDGCHC	2 cut(s)	599, 648
MnlI	CCTC	7 cut(s)	242, 281, 454, 586, 636, 759, 1050
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	5 cut(s)	45, 81, 560, 662, 1121
MslI	CAYNNNNRTG	2 cut(s)	45, 777
MspA1I	CMGCKG	1 cut(s)	525
MspCI	CTTAAG	1 cut(s)	1120
MspR9I	CCNGG	1 cut(s)	757
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	757
NdeII	GATC	4 cut(s)	121, 181, 977, 1150
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	1176
PctI	GAATGC	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	283, 494, 1014
PshAI	GACNNNNGTC	1 cut(s)	1083
PshBI	ATTAAT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	755
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	3 cut(s)	100, 206, 374
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	2 cut(s)	45, 777
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	1176
SaqAI	TTAA	5 cut(s)	45, 81, 560, 662, 1121
Sau3AI	GATC	4 cut(s)	121, 181, 977, 1150
Sau96I	GGNCC	3 cut(s)	100, 206, 374
ScrFI	CCNGG	1 cut(s)	757
SduI	GDGCHC	2 cut(s)	599, 648
SfaNI	GCATC	1 cut(s)	843
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	3 cut(s)	100, 206, 374
SmiMI	CAYNNNNRTG	2 cut(s)	45, 777
SmlI	CTYRAG	1 cut(s)	1120
SmoI	CTYRAG	1 cut(s)	1120
SsiI	CCGC	2 cut(s)	525, 882
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	7 cut(s)	71, 165, 242, 251, 719, 1076, 1139
SstI	GAGCTC	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	755
StyI	CCWWGG	1 cut(s)	1081
TaaI	ACNGT	2 cut(s)	1047, 1195
TaqI	TCGA	4 cut(s)	191, 227, 730, 1202
TfiI	GAWTC	3 cut(s)	283, 494, 1014
Tru1I	TTAA	5 cut(s)	45, 81, 560, 662, 1121
Tru9I	TTAA	5 cut(s)	45, 81, 560, 662, 1121
TspDTI	ATGAA	8 cut(s)	126, 234, 569, 719, 878, 1058, 1185, 1223
TspGWI	ACGGA	1 cut(s)	1149
Vha464I	CTTAAG	1 cut(s)	1120
VpaK11BI	GGWCC	3 cut(s)	100, 206, 374
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	9 cut(s)	193, 221, 301, 441, 502, 548, 571, 888, 999
XmiI	GTMKAC	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	7 cut(s)	71, 165, 242, 251, 719, 1076, 1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.