RLG00000031317

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001915
Physical Location & Seq
Forward (+)
4060201 .. 4060746
546 bp
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UTR
Exon/CDS
Intron
RLM00000031317

Sequence Viewer

Length: 441 bp
ATGAAGAAGTGTGAGCTTTGTGATTCTGTGGCAAAGATGTACTGTGAATCAGATCAGGCTAGTCTGTGTTGGGATTGTGACATCAAGGTCCATGGTGCAAACTTCTTGGTGGCGAAGCATTTAAGGACTCTGCTCTGCCATGTCTGTCAATCTCTAACCCCATGGAATGCCTCTGGACCCAAGCTTGGTCCTACTGTTTCAGTTTGTGAGAATTGTGTGAACAGTTCTAACAAGGAGTCCACAAATGAAGAAGAAGAACATGATGATAATGATGATGATGATCATGAAATTGGAGAAGATGATGATCATGATGGTGGTGGTGGTGACAATGGCGCTGATGATAACGATGGTGGTAATGATGATGATGATGAGGAGAATCAAGTTGTTCCATGGCGCAACAATGCACTCTTGAATTCTCAAGCACGCAATTTCTTCACCTAA

Protein Analysis

147

Amino Acids

16.08

Weight (kDa)

4.14

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 2 - 40 4.9e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 412
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 412
AluBI AGCT 2 cut(s) 16, 184
AluI AGCT 2 cut(s) 16, 184
ApoI RAATTY 1 cut(s) 412
AspLEI GCGC 2 cut(s) 335, 396
AspS9I GGNCC 3 cut(s) 88, 176, 188
AsuHPI GGTGA 2 cut(s) 335, 427
AvaII GGWCC 3 cut(s) 88, 176, 188
BccI CCATC 2 cut(s) 305, 341
BclI TGATCA 2 cut(s) 280, 304
BfaI CTAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 336
Bme18I GGWCC 3 cut(s) 88, 176, 188
BmgT120I GGNCC 3 cut(s) 88, 176, 188
BmiI GGNNCC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 402
BsaBI GATNNNNATC 2 cut(s) 279, 303
BsaJI CCNNGG 3 cut(s) 91, 161, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse8I GATNNNNATC 2 cut(s) 279, 303
BseDI CCNNGG 3 cut(s) 91, 161, 389
BseJI GATNNNNATC 2 cut(s) 279, 303
BseLI CCNNNNNNNGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 185
BsmI GAATGC 1 cut(s) 172
Bsp143I GATC 3 cut(s) 52, 280, 304
Bsp19I CCATGG 3 cut(s) 91, 161, 389
BspHI TCATGA 2 cut(s) 283, 307
BspLI GGNNCC 1 cut(s) 178
BssECI CCNNGG 3 cut(s) 91, 161, 389
BssMI GATC 3 cut(s) 52, 280, 304
BssT1I CCWWGG 3 cut(s) 91, 161, 389
Bst4CI ACNGT 3 cut(s) 44, 196, 224
BstC8I GCNNGC 1 cut(s) 424
BstDSI CCRYGG 3 cut(s) 91, 161, 389
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 335, 396
BstKTI GATC 3 cut(s) 55, 283, 307
BstMBI GATC 3 cut(s) 52, 280, 304
BtgI CCRYGG 3 cut(s) 91, 161, 389
Cac8I GCNNGC 1 cut(s) 424
CciI TCATGA 2 cut(s) 283, 307
CfoI GCGC 2 cut(s) 335, 396
Cfr13I GGNCC 3 cut(s) 88, 176, 188
Csp6I GTAC 1 cut(s) 40
CviAII CATG 7 cut(s) 92, 140, 162, 260, 284, 308, 390
CviJI RGCY 3 cut(s) 16, 59, 184
CviKI_1 RGCY 3 cut(s) 16, 59, 184
CviQI GTAC 1 cut(s) 40
DpnI GATC 3 cut(s) 54, 282, 306
DpnII GATC 3 cut(s) 52, 280, 304
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Eco130I CCWWGG 3 cut(s) 91, 161, 389
Eco47I GGWCC 3 cut(s) 88, 176, 188
EcoRI GAATTC 1 cut(s) 412
EcoT14I CCWWGG 3 cut(s) 91, 161, 389
ErhI CCWWGG 3 cut(s) 91, 161, 389
FaeI CATG 7 cut(s) 95, 143, 165, 263, 287, 311, 393
FaiI YATR 7 cut(s) 93, 141, 163, 261, 285, 309, 391
FatI CATG 7 cut(s) 91, 139, 161, 259, 283, 307, 389
FbaI TGATCA 2 cut(s) 280, 304
FspBI CTAG 1 cut(s) 60
GlaI GCGC 2 cut(s) 334, 395
HaeII RGCGCY 1 cut(s) 336
HhaI GCGC 2 cut(s) 335, 396
Hin1II CATG 7 cut(s) 95, 143, 165, 263, 287, 311, 393
Hin6I GCGC 2 cut(s) 333, 394
HinP1I GCGC 2 cut(s) 333, 394
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 5 cut(s) 23, 47, 127, 236, 376
HphI GGTGA 2 cut(s) 335, 427
Hpy166II GTNNAC 2 cut(s) 220, 240
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 4 cut(s) 174, 284, 308, 409
Hpy8I GTNNAC 2 cut(s) 220, 240
HpyCH4III ACNGT 3 cut(s) 44, 196, 224
HpyCH4V TGCA 2 cut(s) 98, 404
Hsp92II CATG 7 cut(s) 95, 143, 165, 263, 287, 311, 393
HspAI GCGC 2 cut(s) 333, 394
Ksp22I TGATCA 2 cut(s) 280, 304
Kzo9I GATC 3 cut(s) 52, 280, 304
LpnPI CCDG 2 cut(s) 41, 159
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 77, 323
MalI GATC 3 cut(s) 54, 282, 306
MboI GATC 3 cut(s) 52, 280, 304
MboII GAAGA 6 cut(s) 16, 260, 263, 266, 308, 424
MluCI AATT 4 cut(s) 211, 288, 412, 427
MlyI GAGTC 2 cut(s) 121, 245
MnlI CCTC 2 cut(s) 181, 364
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 172
NcoI CCATGG 3 cut(s) 91, 161, 389
NdeII GATC 3 cut(s) 52, 280, 304
NlaIII CATG 7 cut(s) 95, 143, 165, 263, 287, 311, 393
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 2 cut(s) 77, 323
PagI TCATGA 2 cut(s) 283, 307
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 3 cut(s) 23, 47, 376
PleI GAGTC 2 cut(s) 121, 244
PpsI GAGTC 2 cut(s) 121, 244
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 3 cut(s) 88, 176, 188
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 122
Sau3AI GATC 3 cut(s) 52, 280, 304
Sau96I GGNCC 3 cut(s) 88, 176, 188
SchI GAGTC 2 cut(s) 121, 245
SetI ASST 4 cut(s) 18, 90, 186, 440
SinI GGWCC 3 cut(s) 88, 176, 188
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
Sse9I AATT 4 cut(s) 211, 288, 412, 427
SspMI CTAG 1 cut(s) 60
StyI CCWWGG 3 cut(s) 91, 161, 389
TaaI ACNGT 3 cut(s) 44, 196, 224
TasI AATT 4 cut(s) 211, 288, 412, 427
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 3 cut(s) 23, 47, 376
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TseFI GTSAC 2 cut(s) 77, 323
Tsp45I GTSAC 2 cut(s) 77, 323
TspDTI ATGAA 3 cut(s) 17, 261, 300
VpaK11BI GGWCC 3 cut(s) 88, 176, 188
XapI RAATTY 1 cut(s) 412
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.