Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000247.1

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

381000 .. 381828

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000247.1_g000074.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgaaagagtgcgagctgtgtggagtgagagctcggatgtactgcgaggcggaccgcgcgagtttatgctgggactgcgacaagaaagttcacggagctaactttctggtggcgaagcatccgagagttcttctctgccatgtgtgccagtcgcagacgccgtggacgagttgcggagccaagctgacgccgacggtgtcggtctgccagagttgcgttggaagctgtagaaagattgacctgaacgaggagcaagaaagcgaggcagagaatgaagaagaagaagaagaagattattatgatgatgaagatgaagaagatgaggaggaagaggatgagaaccaggtggttccatgggcatgctgttcttactcaccggcacagcgtccaccagcagtgagcggttcggatagtgaagccgagatttcggtgtcgaagcgactgcgagagaatgtagatgtggattattctgatgatgaggtagggtttgatgggacgtcgtcgtttggtggttcaatgagaccgttgaaaaggccgaaagtgggtgaagagaagaatggtgacggagatgatggcggtgaatcggagtggagagcaacggcgatcatgagctcaattcagaggctggaaaaggaagtgatcaacggcgctggtaatgcgtccaccgcggttcttaggatttgcaaactcagtagagatgagagcagccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

237

Amino Acids

26.26

Weight (kDa)

4.42

Isoelectric Point (pI)

58.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	500
AccBSI	CCGCTC	1 cut(s)	402
AccII	CGCG	3 cut(s)	57, 59, 668
AciI	CCGC	7 cut(s)	50, 55, 174, 402, 576, 666, 668
AcyI	GRCGYC	3 cut(s)	158, 188, 497
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	247, 542
AgsI	TTSAA	2 cut(s)	516, 529
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	6 cut(s)	16, 32, 98, 184, 225, 612
AluI	AGCT	6 cut(s)	16, 32, 98, 184, 225, 612
Alw21I	GWGCWC	2 cut(s)	34, 614
Alw26I	GTCTC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	625
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	1 cut(s)	705
AspLEI	GCGC	2 cut(s)	59, 650
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	4 cut(s)	366, 557, 572, 590
AvaII	GGWCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	34, 614
Bbv12I	GWGCWC	2 cut(s)	34, 614
BccI	CCATC	2 cut(s)	485, 566
BceAI	ACGGC	3 cut(s)	145, 615, 661
BcgI	CGANNNNNNTGC	2 cut(s)	424, 458
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	514
BfmI	CTRYAG	1 cut(s)	226
BfoI	RGCGCY	1 cut(s)	651
BisI	GCNGC	1 cut(s)	706
BlsI	GCNGC	1 cut(s)	707
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	178, 351
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BsaHI	GRCGYC	3 cut(s)	158, 188, 497
BsaI	GGTCTC	1 cut(s)	514
BsaJI	CCNNGG	3 cut(s)	161, 353, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 542
Bse118I	RCCGGY	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	161, 353, 666
BseGI	GGATG	3 cut(s)	42, 118, 340
BseLI	CCNNNNNNNGG	2 cut(s)	247, 542
BseMII	CTCAG	1 cut(s)	703
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	263, 338
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	3 cut(s)	57, 59, 668
BshFI	GGCC	1 cut(s)	535
BsiHKAI	GWGCWC	2 cut(s)	34, 614
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	2 cut(s)	86, 508
BslI	CCNNNNNNNGG	2 cut(s)	247, 542
BsmAI	GTCTC	1 cut(s)	514
BsmFI	GGGAC	2 cut(s)	86, 508
BsnI	GGCC	1 cut(s)	535
Bso31I	GGTCTC	1 cut(s)	514
Bsp1286I	GDGCHC	2 cut(s)	34, 614
Bsp143I	GATC	2 cut(s)	603, 639
Bsp19I	CCATGG	1 cut(s)	353
BspACI	CCGC	7 cut(s)	50, 55, 174, 402, 576, 666, 668
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	1 cut(s)	702
BspFNI	CGCG	3 cut(s)	57, 59, 668
BspHI	TCATGA	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	178, 351
BspTNI	GGTCTC	1 cut(s)	514
BsrBI	CCGCTC	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	376
BssECI	CCNNGG	3 cut(s)	161, 353, 666
BssMI	GATC	2 cut(s)	603, 639
BssNI	GRCGYC	3 cut(s)	158, 188, 497
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	2 cut(s)	196, 525
Bst6I	CTCTTC	2 cut(s)	324, 543
BstACI	GRCGYC	3 cut(s)	158, 188, 497
BstC8I	GCNNGC	2 cut(s)	14, 361
BstDEI	CTNAG	2 cut(s)	674, 689
BstDSI	CCRYGG	3 cut(s)	161, 353, 666
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	42, 118, 340
BstFNI	CGCG	3 cut(s)	57, 59, 668
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	2 cut(s)	59, 650
BstKTI	GATC	2 cut(s)	606, 642
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	2 cut(s)	603, 639
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 75, 144, 213, 222, 656, 665
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	3 cut(s)	57, 59, 668
BsuRI	GGCC	1 cut(s)	535
BtgI	CCRYGG	3 cut(s)	161, 353, 666
BtsCI	GGATG	3 cut(s)	42, 118, 340
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	14, 361
CaiI	CAGNNNCTG	1 cut(s)	625
CciI	TCATGA	1 cut(s)	606
CfoI	GCGC	2 cut(s)	59, 650
Cfr10I	RCCGGY	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	52
Cfr42I	CCGCGG	1 cut(s)	669
CpoI	CGGWCCG	1 cut(s)	52
CseI	GACGC	4 cut(s)	166, 196, 374, 648
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	40
CspI	CGGWCCG	1 cut(s)	52
CviAII	CATG	4 cut(s)	140, 354, 360, 607
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	674, 689
DpnI	GATC	2 cut(s)	605, 641
DpnII	GATC	2 cut(s)	603, 639
Eam1104I	CTCTTC	2 cut(s)	324, 543
EarI	CTCTTC	2 cut(s)	324, 543
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	32, 612
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	34, 614
Eco31I	GGTCTC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	32, 612
EcoICRI	GAGCTC	2 cut(s)	32, 612
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	2 cut(s)	34, 614
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	4 cut(s)	143, 357, 363, 610
FaiI	YATR	6 cut(s)	67, 141, 300, 355, 361, 608
FaqI	GGGAC	2 cut(s)	86, 508
FatI	CATG	4 cut(s)	139, 353, 359, 606
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	1 cut(s)	706
FokI	GGATG	3 cut(s)	49, 105, 347
FriOI	GRGCYC	2 cut(s)	34, 614
Fsp4HI	GCNGC	1 cut(s)	706
GlaI	GCGC	2 cut(s)	58, 649
GluI	GCNGC	1 cut(s)	706
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	651
HaeIII	GGCC	1 cut(s)	535
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	4 cut(s)	166, 196, 374, 648
HhaI	GCGC	2 cut(s)	59, 650
Hin1I	GRCGYC	3 cut(s)	158, 188, 497
Hin1II	CATG	4 cut(s)	143, 357, 363, 610
Hin6I	GCGC	2 cut(s)	57, 648
HinP1I	GCGC	2 cut(s)	57, 648
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	4 cut(s)	366, 557, 572, 590
Hpy166II	GTNNAC	4 cut(s)	91, 165, 389, 663
Hpy188I	TCNGA	6 cut(s)	36, 123, 409, 472, 586, 621
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	4 cut(s)	91, 165, 389, 663
Hpy99I	CGWCG	3 cut(s)	196, 502, 505
HpyCH4III	ACNGT	2 cut(s)	196, 525
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	1 cut(s)	684
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 75, 144, 213, 222, 656, 665
HpyF3I	CTNAG	2 cut(s)	674, 689
HpySE526I	ACGT	1 cut(s)	497
Hsp92I	GRCGYC	3 cut(s)	158, 188, 497
Hsp92II	CATG	4 cut(s)	143, 357, 363, 610
HspAI	GCGC	2 cut(s)	57, 648
Ksp22I	TGATCA	1 cut(s)	639
KspI	CCGCGG	1 cut(s)	669
Kzo9I	GATC	2 cut(s)	603, 639
LmnI	GCTCC	3 cut(s)	95, 176, 250
LweI	GCATC	1 cut(s)	127
MabI	ACCWGGT	1 cut(s)	342
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	2 cut(s)	605, 641
MbiI	CCGCTC	1 cut(s)	402
MboI	GATC	2 cut(s)	603, 639
MhlI	GDGCHC	2 cut(s)	34, 614
MluCI	AATT	1 cut(s)	615
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	8 cut(s)	40, 241, 256, 316, 319, 325, 472, 615
MslI	CAYNNNNRTG	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	3 cut(s)	57, 59, 668
MwoI	GCNNNNNNNGC	7 cut(s)	56, 75, 144, 213, 222, 656, 665
NcoI	CCATGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	603, 639
NlaIII	CATG	4 cut(s)	143, 357, 363, 610
NlaIV	GGNNCC	2 cut(s)	178, 351
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	560
NspI	RCATGY	1 cut(s)	363
PaeI	GCATGC	1 cut(s)	363
PagI	TCATGA	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 164
PfeI	GAWTC	1 cut(s)	581
PflFI	GACNNNGTC	2 cut(s)	196, 499
PkrI	GCNGC	1 cut(s)	707
Psp124BI	GAGCTC	2 cut(s)	34, 614
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	178, 351
PspPI	GGNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	625
PsyI	GACNNNGTC	2 cut(s)	196, 499
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	358
Rsr2I	CGGWCCG	1 cut(s)	52
RsrII	CGGWCCG	1 cut(s)	52
SacI	GAGCTC	2 cut(s)	34, 614
SacII	CCGCGG	1 cut(s)	669
SatI	GCNGC	1 cut(s)	706
Sau3AI	GATC	2 cut(s)	603, 639
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	34, 614
SexAI	ACCWGGT	1 cut(s)	342
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	226
Sfr303I	CCGCGG	1 cut(s)	669
SgrBI	CCGCGG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	358
SphI	GCATGC	1 cut(s)	363
Sse9I	AATT	1 cut(s)	615
SsiI	CCGC	7 cut(s)	50, 55, 174, 402, 576, 666, 668
SstI	GAGCTC	2 cut(s)	34, 614
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	196, 525
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	1 cut(s)	434
TaqII	GACCGA	1 cut(s)	190
TasI	AATT	1 cut(s)	615
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	581
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	1 cut(s)	705
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	4 cut(s)	17, 288, 321, 327
TspGWI	ACGGA	2 cut(s)	108, 579
TspRI	CASTG	1 cut(s)	402
Tth111I	GACNNNGTC	2 cut(s)	196, 499
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	245
XceI	RCATGY	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
ZraI	GACGTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.