Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

90978434 .. 90979735

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAGAAGTGTGAGCTATGTGATTCTGTGGCAAAGATGTACTGCGAATCAGATCAGGCTAGTCTGTGTTGGGATTGTGACATCAAGGTTCATGGTGCAAACTTCTTGGTGGCGAAGCATTTAAGGACTCTGCTCTGCCATGTCTGTCAATCTCTAACCCCATGGAATGCCTCTGGACCCAAGCTTGGTCCTACTGTTTCAGTTTGTGAGAATTGTGTGAACAGTTCTAACAAGGAGTCCACAAATGAAGAAGAAGAAGAACATGATGATAATGATGATGGTGATCATGAAGAAAATAGCATTGGAGAAGATGATGAACATGATGGTGGTGGTGGTGACAATGGCGCTGATGATAACGATGGTGGTAATGATGATGATGATGATGAGGAGAATCAAGTTGTTCCATGGTCATCTAGCTCTTCTACTCCACCAGACTCAAGTTCTTTAGTGATGAAGAATGTTGCCATGAAAGCTTCGCAGAAACAAGATCATCATATCCATGTAAGCGCAGGCGCTACAATGCACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

176

Amino Acids

19.01

Weight (kDa)

4.3

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 40	7e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	4 cut(s)	16, 184, 417, 473
AluI	AGCT	4 cut(s)	16, 184, 417, 473
AspLEI	GCGC	3 cut(s)	347, 509, 515
AspS9I	GGNCC	2 cut(s)	176, 188
AsuHPI	GGTGA	2 cut(s)	293, 347
AvaII	GGWCC	2 cut(s)	176, 188
BccI	CCATC	3 cut(s)	272, 317, 353
BclI	TGATCA	1 cut(s)	283
BfaI	CTAG	2 cut(s)	60, 414
BfoI	RGCGCY	2 cut(s)	348, 516
Bme18I	GGWCC	2 cut(s)	176, 188
BmgT120I	GGNCC	2 cut(s)	176, 188
BmiI	GGNNCC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	421
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	161, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	161, 404
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	52, 283, 487
Bsp19I	CCATGG	2 cut(s)	161, 404
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	161, 404
BssMI	GATC	3 cut(s)	52, 283, 487
BssT1I	CCWWGG	2 cut(s)	161, 404
Bst4CI	ACNGT	2 cut(s)	196, 224
Bst6I	CTCTTC	1 cut(s)	424
BstC8I	GCNNGC	1 cut(s)	511
BstDSI	CCRYGG	2 cut(s)	161, 404
BstH2I	RGCGCY	2 cut(s)	348, 516
BstHHI	GCGC	3 cut(s)	347, 509, 515
BstKTI	GATC	3 cut(s)	55, 286, 490
BstMBI	GATC	3 cut(s)	52, 283, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BtgI	CCRYGG	2 cut(s)	161, 404
Cac8I	GCNNGC	1 cut(s)	511
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	3 cut(s)	347, 509, 515
Cfr13I	GGNCC	2 cut(s)	176, 188
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	9 cut(s)	92, 140, 162, 263, 287, 320, 405, 466, 500
CviJI	RGCY	5 cut(s)	16, 59, 184, 417, 473
CviKI_1	RGCY	5 cut(s)	16, 59, 184, 417, 473
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	3 cut(s)	54, 285, 489
DpnII	GATC	3 cut(s)	52, 283, 487
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	161, 404
Eco47I	GGWCC	2 cut(s)	176, 188
EcoT14I	CCWWGG	2 cut(s)	161, 404
ErhI	CCWWGG	2 cut(s)	161, 404
FaeI	CATG	9 cut(s)	95, 143, 165, 266, 290, 323, 408, 469, 503
FatI	CATG	9 cut(s)	91, 139, 161, 262, 286, 319, 404, 465, 499
FbaI	TGATCA	1 cut(s)	283
FspBI	CTAG	2 cut(s)	60, 414
GlaI	GCGC	3 cut(s)	346, 508, 514
HaeII	RGCGCY	2 cut(s)	348, 516
HhaI	GCGC	3 cut(s)	347, 509, 515
Hin1II	CATG	9 cut(s)	95, 143, 165, 266, 290, 323, 408, 469, 503
Hin6I	GCGC	3 cut(s)	345, 507, 513
HinP1I	GCGC	3 cut(s)	345, 507, 513
HindIII	AAGCTT	2 cut(s)	182, 471
HinfI	GANTC	6 cut(s)	23, 47, 127, 236, 391, 434
HphI	GGTGA	2 cut(s)	293, 347
Hpy166II	GTNNAC	2 cut(s)	220, 240
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	174, 287, 528
Hpy8I	GTNNAC	2 cut(s)	220, 240
HpyCH4III	ACNGT	2 cut(s)	196, 224
HpyCH4V	TGCA	2 cut(s)	98, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
Hsp92II	CATG	9 cut(s)	95, 143, 165, 266, 290, 323, 408, 469, 503
HspAI	GCGC	3 cut(s)	345, 507, 513
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	52, 283, 487
LguI	GCTCTTC	1 cut(s)	424
LpnPI	CCDG	4 cut(s)	41, 159, 444, 495
MaeI	CTAG	2 cut(s)	60, 414
MaeIII	GTNAC	2 cut(s)	77, 335
MalI	GATC	3 cut(s)	54, 285, 489
MboI	GATC	3 cut(s)	52, 283, 487
MboII	GAAGA	9 cut(s)	16, 260, 263, 266, 269, 302, 320, 411, 466
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	3 cut(s)	121, 245, 428
MnlI	CCTC	2 cut(s)	181, 379
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	2 cut(s)	324, 498
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	470
NcoI	CCATGG	2 cut(s)	161, 404
NdeII	GATC	3 cut(s)	52, 283, 487
NlaIII	CATG	9 cut(s)	95, 143, 165, 266, 290, 323, 408, 469, 503
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	2 cut(s)	77, 335
PagI	TCATGA	1 cut(s)	286
PciSI	GCTCTTC	1 cut(s)	424
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	23, 47, 391
PleI	GAGTC	3 cut(s)	121, 244, 428
PpsI	GAGTC	3 cut(s)	121, 244, 428
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	176, 188
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	324, 498
SapI	GCTCTTC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	3 cut(s)	52, 283, 487
Sau96I	GGNCC	2 cut(s)	176, 188
SchI	GAGTC	3 cut(s)	121, 245, 428
SetI	ASST	5 cut(s)	18, 90, 186, 419, 475
SinI	GGWCC	2 cut(s)	176, 188
SmiMI	CAYNNNNRTG	2 cut(s)	324, 498
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	1 cut(s)	211
SspMI	CTAG	2 cut(s)	60, 414
StyI	CCWWGG	2 cut(s)	161, 404
TaaI	ACNGT	2 cut(s)	196, 224
TasI	AATT	1 cut(s)	211
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	23, 47, 391
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseFI	GTSAC	2 cut(s)	77, 335
Tsp45I	GTSAC	2 cut(s)	77, 335
TspDTI	ATGAA	7 cut(s)	17, 80, 261, 303, 330, 467, 482
VpaK11BI	GGWCC	2 cut(s)	176, 188
XspI	CTAG	2 cut(s)	60, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.