Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Forward (+)

4737962 .. 4738510

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGAAGTGTGAGCTGTGTGATTCTATGGCAAAGATGTACTGTGAATCAGATCAGGCTAGTCTGTGTTGGGATTGTGACATCAAGGTTCATGGTGCAAACTTCTTGGTGGCGAAGCATTTAAGGACTCTGCTCTGCCATGTCTGTCAATCTCTAACCCCATGGAATGCCTCTGGACCCAAGCTTGGTCATACTGTTTCAGTTTGTGAGAATTGTATGAACAGTTCTAACAAGGAGTCCACAAATGAAGAAGAAGAAGAACATGATGATGATGATCATGAAGAAAATAGCATTGGAGAAGATGATGAACATGATGGTGGTGGTGGCGACAATGGCGCTGATGATAACGATGGTGGTAATGATGATGATGATGAGGAGAATCAAGTTGTTCCATGGTCATCCAGCTCTTCTACTCCACTGGACTCAAGTTCTTTAAGTGATGAAGAATGTTGCCATGAAAGCTTCTCAGAAACAAGATCATCATATCCATGTAAGCGCAGGCGCTACAATGCACTCTTGAATTCTCAAGCACGCAATTTCTTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

182

Amino Acids

20.21

Weight (kDa)

4.33

Isoelectric Point (pI)

64.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 40	3.9e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	520
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	520
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	4 cut(s)	16, 184, 405, 462
AluI	AGCT	4 cut(s)	16, 184, 405, 462
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	3 cut(s)	338, 498, 504
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	176
BccI	CCATC	2 cut(s)	308, 344
BclI	TGATCA	1 cut(s)	274
BfaI	CTAG	1 cut(s)	60
BfoI	RGCGCY	2 cut(s)	339, 505
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	178
BpuEI	CTTGAG	2 cut(s)	409, 510
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	161, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	423
Bse8I	GATNNNNATC	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	161, 392
BseGI	GGATG	1 cut(s)	398
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	52, 274, 476
Bsp19I	CCATGG	2 cut(s)	161, 392
BspCNI	CTCAG	1 cut(s)	479
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	161, 392
BssMI	GATC	3 cut(s)	52, 274, 476
BssT1I	CCWWGG	2 cut(s)	161, 392
Bst4CI	ACNGT	3 cut(s)	44, 196, 224
Bst6I	CTCTTC	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	500, 532
BstDEI	CTNAG	1 cut(s)	466
BstDSI	CCRYGG	2 cut(s)	161, 392
BstF5I	GGATG	1 cut(s)	398
BstH2I	RGCGCY	2 cut(s)	339, 505
BstHHI	GCGC	3 cut(s)	338, 498, 504
BstKTI	GATC	3 cut(s)	55, 277, 479
BstMBI	GATC	3 cut(s)	52, 274, 476
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 459
BtgI	CCRYGG	2 cut(s)	161, 392
BtsCI	GGATG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	500, 532
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	3 cut(s)	338, 498, 504
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	9 cut(s)	92, 140, 162, 263, 278, 311, 393, 455, 489
CviJI	RGCY	5 cut(s)	16, 59, 184, 405, 462
CviKI_1	RGCY	5 cut(s)	16, 59, 184, 405, 462
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	466
DpnI	GATC	3 cut(s)	54, 276, 478
DpnII	GATC	3 cut(s)	52, 274, 476
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	161, 392
Eco47I	GGWCC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	161, 392
ErhI	CCWWGG	2 cut(s)	161, 392
FaeI	CATG	9 cut(s)	95, 143, 165, 266, 281, 314, 396, 458, 492
FatI	CATG	9 cut(s)	91, 139, 161, 262, 277, 310, 392, 454, 488
FbaI	TGATCA	1 cut(s)	274
FokI	GGATG	1 cut(s)	385
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	3 cut(s)	337, 497, 503
HaeII	RGCGCY	2 cut(s)	339, 505
HhaI	GCGC	3 cut(s)	338, 498, 504
Hin1II	CATG	9 cut(s)	95, 143, 165, 266, 281, 314, 396, 458, 492
Hin6I	GCGC	3 cut(s)	336, 496, 502
HinP1I	GCGC	3 cut(s)	336, 496, 502
HindIII	AAGCTT	2 cut(s)	182, 460
HinfI	GANTC	6 cut(s)	23, 47, 127, 236, 379, 422
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	52, 469
Hpy188III	TCNNGA	3 cut(s)	174, 278, 517
Hpy8I	GTNNAC	1 cut(s)	240
HpyCH4III	ACNGT	3 cut(s)	44, 196, 224
HpyCH4V	TGCA	2 cut(s)	98, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 459
HpyF3I	CTNAG	1 cut(s)	466
Hsp92II	CATG	9 cut(s)	95, 143, 165, 266, 281, 314, 396, 458, 492
HspAI	GCGC	3 cut(s)	336, 496, 502
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	52, 274, 476
LguI	GCTCTTC	1 cut(s)	412
LpnPI	CCDG	5 cut(s)	41, 159, 404, 415, 484
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	54, 276, 478
MboI	GATC	3 cut(s)	52, 274, 476
MluCI	AATT	3 cut(s)	211, 520, 535
MlyI	GAGTC	3 cut(s)	121, 245, 416
MnlI	CCTC	2 cut(s)	181, 367
MseI	TTAA	2 cut(s)	122, 434
MslI	CAYNNNNRTG	3 cut(s)	267, 315, 487
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	333, 459
NcoI	CCATGG	2 cut(s)	161, 392
NdeII	GATC	3 cut(s)	52, 274, 476
NlaIII	CATG	9 cut(s)	95, 143, 165, 266, 281, 314, 396, 458, 492
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	412
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	23, 47, 379
PleI	GAGTC	3 cut(s)	121, 244, 416
PpsI	GAGTC	3 cut(s)	121, 244, 416
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	176
PsrI	GAACNNNNNNTAC	2 cut(s)	208, 240
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	3 cut(s)	267, 315, 487
SapI	GCTCTTC	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	122, 434
Sau3AI	GATC	3 cut(s)	52, 274, 476
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	3 cut(s)	121, 245, 416
SetI	ASST	6 cut(s)	18, 90, 186, 407, 464, 548
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	3 cut(s)	267, 315, 487
SmlI	CTYRAG	2 cut(s)	424, 525
SmoI	CTYRAG	2 cut(s)	424, 525
Sse9I	AATT	3 cut(s)	211, 520, 535
SspMI	CTAG	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	161, 392
TaaI	ACNGT	3 cut(s)	44, 196, 224
TasI	AATT	3 cut(s)	211, 520, 535
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	23, 47, 379
Tru1I	TTAA	2 cut(s)	122, 434
Tru9I	TTAA	2 cut(s)	122, 434
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	8 cut(s)	17, 80, 233, 261, 294, 321, 456, 471
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	520
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.