Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

1752111 .. 1752931

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAGAATTGCGAGCTCTGCCGGCTTCCAGCGAGAATCTTCTGCGAATCGGACCAGGCGATTCTGTGCTGGGACTGCGACGCCAAGGTTCACGGCGCCAATTTCCTGGTGTCTCGCCACTCCCGGAGCCTCCTCTGCCACGGCTGCCAGTCTCCCACACCTTGGAAGGCCTCCGGCGAAAAGCTCGGCCACACTTTTTCGGTGTGCGAGAGCTGCGTTCTCCCAGACGGAGGCAGAGACGACGACGACGAGAGCCAGGGCGGCAATGATGAGGAATTCGATTCGGATAACGATGAGATTGACGATGACGATGACGACGATGATGATGAGGATGTTGATTTCGATGAGGACGGAGATAATCAGGTGGTGCCGTTGTCTTCCACCGCGACGCCGCCTCCGCCGACTTCAAGCGCATCGAGCGGCGAGCAGTCTGCGACTGCTTTCAACAATGGCGGTGGAGGTGATTCCAAAACCGCCACCGCCGTTTCGTTGAAGCGATTCAGAGAAACCGCGTCGGATCTTCGCTCCCAGATCGCCGATCTCGACCGTTCATGTCCTCACCAGAGGTGTGGCTCCGCTAAGGCTGCTCGAGCGGGTCCGTCGGAACGCAACGGGGGAGCCACTTCGGTTGACTCATCGAGACCTCGAAAAGACCGGAGAATCGACCTAAACCGGCCGGCTTCTCCGTCCTCGCCCGTTATTGAGTCCCCGAGGAGTTTTCGCCGGCAAGGCAATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

247

Amino Acids

26.46

Weight (kDa)

4.55

Isoelectric Point (pI)

67.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	95, 367
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccBSI	CCGCTC	2 cut(s)	420, 593
AccII	CGCG	2 cut(s)	386, 512
AclWI	GGATC	1 cut(s)	525
AcoI	YGGCCR	2 cut(s)	187, 674
AcsI	RAATTY	1 cut(s)	275
AcyI	GRCGYC	3 cut(s)	81, 96, 389
AfiI	CCNNNNNNNGG	2 cut(s)	162, 230
AgsI	TTSAA	3 cut(s)	408, 445, 493
AjnI	CCWGG	3 cut(s)	54, 105, 255
AluBI	AGCT	3 cut(s)	16, 184, 213
AluI	AGCT	3 cut(s)	16, 184, 213
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	4 cut(s)	117, 156, 231, 634
AlwI	GGATC	1 cut(s)	525
Ama87I	CYCGRG	2 cut(s)	588, 709
AoxI	GGCC	3 cut(s)	168, 187, 674
ApeKI	GCWGC	3 cut(s)	144, 213, 584
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	98, 413
AspS9I	GGNCC	2 cut(s)	52, 596
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	473, 551
AvaI	CYCGRG	2 cut(s)	588, 709
AvaII	GGWCC	2 cut(s)	52, 596
BanI	GGYRCC	2 cut(s)	95, 367
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	131, 200, 571
BceAI	ACGGC	4 cut(s)	109, 157, 355, 467
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	3 cut(s)	56, 107, 257
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	4 cut(s)	117, 156, 231, 634
BfoI	RGCGCY	1 cut(s)	99
BglI	GCCNNNNNGGC	2 cut(s)	261, 729
BisI	GCNGC	6 cut(s)	145, 214, 262, 392, 421, 585
BlsI	GCNGC	6 cut(s)	146, 215, 263, 393, 422, 586
Bme1390I	CCNGG	4 cut(s)	56, 107, 124, 257
Bme18I	GGWCC	2 cut(s)	52, 596
BmeT110I	CYCGRG	2 cut(s)	588, 709
BmgT120I	GGNCC	2 cut(s)	52, 596
BmiI	GGNNCC	6 cut(s)	97, 128, 369, 574, 597, 619
BmrFI	CCNGG	4 cut(s)	56, 107, 124, 257
BmsI	GCATC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	124
BsaHI	GRCGYC	3 cut(s)	81, 96, 389
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	5 cut(s)	84, 139, 161, 256, 710
BsaWI	WCCGGW	1 cut(s)	654
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 230
Bse118I	RCCGGY	4 cut(s)	21, 672, 676, 723
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	3 cut(s)	56, 107, 257
BseDI	CCNNGG	5 cut(s)	84, 139, 161, 256, 710
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	162, 230
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	122, 727
BseX3I	CGGCCG	1 cut(s)	674
BseXI	GCAGC	3 cut(s)	131, 200, 571
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	2 cut(s)	386, 512
Bsh1285I	CGRYCG	2 cut(s)	547, 677
BshFI	GGCC	3 cut(s)	170, 189, 676
BshNI	GGYRCC	2 cut(s)	95, 367
BsiEI	CGRYCG	2 cut(s)	547, 677
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	2 cut(s)	588, 709
BsiSI	CCGG	7 cut(s)	22, 124, 174, 655, 673, 677, 724
BslFI	GGGAC	2 cut(s)	86, 691
BslI	CCNNNNNNNGG	2 cut(s)	162, 230
BsmAI	GTCTC	4 cut(s)	117, 156, 231, 634
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	86, 691
BsnI	GGCC	3 cut(s)	170, 189, 676
Bso31I	GGTCTC	1 cut(s)	634
BsoBI	CYCGRG	2 cut(s)	588, 709
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	517, 531, 538
BspANI	GGCC	3 cut(s)	170, 189, 676
BspFNI	CGCG	2 cut(s)	386, 512
BspLI	GGNNCC	6 cut(s)	97, 128, 369, 574, 597, 619
BspPI	GGATC	1 cut(s)	525
BspT107I	GGYRCC	2 cut(s)	95, 367
BspTNI	GGTCTC	1 cut(s)	634
BsrBI	CCGCTC	2 cut(s)	420, 593
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	4 cut(s)	21, 672, 676, 723
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	4 cut(s)	21, 672, 676, 723
BssECI	CCNNGG	5 cut(s)	84, 139, 161, 256, 710
BssMI	GATC	3 cut(s)	517, 531, 538
BssNI	GRCGYC	3 cut(s)	81, 96, 389
BssT1I	CCWWGG	2 cut(s)	84, 161
Bst2UI	CCWGG	3 cut(s)	56, 107, 257
Bst4CI	ACNGT	1 cut(s)	548
BstACI	GRCGYC	3 cut(s)	81, 96, 389
BstC8I	GCNNGC	5 cut(s)	14, 23, 425, 678, 725
BstDEI	CTNAG	1 cut(s)	579
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	2 cut(s)	386, 512
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	98, 413
BstKTI	GATC	3 cut(s)	520, 534, 541
BstMAI	GTCTC	4 cut(s)	117, 156, 231, 634
BstMBI	GATC	3 cut(s)	517, 531, 538
BstMCI	CGRYCG	2 cut(s)	547, 677
BstNI	CCWGG	3 cut(s)	56, 107, 257
BstSCI	CCNGG	4 cut(s)	54, 105, 122, 255
BstUI	CGCG	2 cut(s)	386, 512
BstV1I	GCAGC	3 cut(s)	131, 200, 571
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	517
BstXI	CCANNNNNNTGG	2 cut(s)	106, 569
BstYI	RGATCY	1 cut(s)	517
BstZI	CGGCCG	1 cut(s)	674
BsuRI	GGCC	3 cut(s)	170, 189, 676
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	5 cut(s)	14, 23, 425, 678, 725
CfoI	GCGC	2 cut(s)	98, 413
Cfr10I	RCCGGY	4 cut(s)	21, 672, 676, 723
Cfr13I	GGNCC	2 cut(s)	52, 596
CseI	GACGC	3 cut(s)	89, 397, 501
CspCI	CAANNNNNGTGG	4 cut(s)	436, 471, 610, 645
CviAII	CATG	1 cut(s)	552
DdeI	CTNAG	1 cut(s)	579
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	3 cut(s)	519, 533, 540
DpnII	GATC	3 cut(s)	517, 531, 538
EaeI	YGGCCR	2 cut(s)	187, 674
EagI	CGGCCG	1 cut(s)	674
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	16
EclXI	CGGCCG	1 cut(s)	674
Eco130I	CCWWGG	2 cut(s)	84, 161
Eco147I	AGGCCT	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	634
Eco47I	GGWCC	2 cut(s)	52, 596
Eco52I	CGGCCG	1 cut(s)	674
Eco53kI	GAGCTC	1 cut(s)	16
Eco88I	CYCGRG	2 cut(s)	588, 709
EcoICRI	GAGCTC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	3 cut(s)	54, 105, 255
EcoT14I	CCWWGG	2 cut(s)	84, 161
EcoT38I	GRGCYC	1 cut(s)	18
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
ErhI	CCWWGG	2 cut(s)	84, 161
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	1 cut(s)	555
FaiI	YATR	1 cut(s)	553
FaqI	GGGAC	2 cut(s)	86, 691
FatI	CATG	1 cut(s)	551
FauI	CCCGC	1 cut(s)	586
Fnu4HI	GCNGC	6 cut(s)	145, 214, 262, 392, 421, 585
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	6 cut(s)	145, 214, 262, 392, 421, 585
GlaI	GCGC	2 cut(s)	97, 412
GluI	GCNGC	6 cut(s)	145, 214, 262, 392, 421, 585
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	170, 189, 676
HapII	CCGG	7 cut(s)	22, 124, 174, 655, 673, 677, 724
HgaI	GACGC	3 cut(s)	89, 397, 501
HhaI	GCGC	2 cut(s)	98, 413
Hin1I	GRCGYC	3 cut(s)	81, 96, 389
Hin1II	CATG	1 cut(s)	555
Hin6I	GCGC	2 cut(s)	96, 411
HinP1I	GCGC	2 cut(s)	96, 411
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	9 cut(s)	36, 47, 61, 281, 464, 498, 632, 660, 704
HpaII	CCGG	7 cut(s)	22, 124, 174, 655, 673, 677, 724
HphI	GGTGA	2 cut(s)	473, 551
Hpy166II	GTNNAC	2 cut(s)	91, 631
Hpy188I	TCNGA	5 cut(s)	52, 286, 503, 517, 604
Hpy188III	TCNNGA	2 cut(s)	542, 639
Hpy8I	GTNNAC	2 cut(s)	91, 631
Hpy99I	CGWCG	8 cut(s)	83, 245, 248, 251, 320, 391, 517, 604
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	548
HpyF3I	CTNAG	1 cut(s)	579
Hsp92I	GRCGYC	3 cut(s)	81, 96, 389
Hsp92II	CATG	1 cut(s)	555
HspAI	GCGC	2 cut(s)	96, 411
KasI	GGCGCC	1 cut(s)	95
KroI	GCCGGC	3 cut(s)	21, 676, 723
KroNI	GCCGGC	3 cut(s)	23, 678, 725
Kzo9I	GATC	3 cut(s)	517, 531, 538
LmnI	GCTCC	4 cut(s)	126, 530, 578, 617
Lsp1109I	GCAGC	3 cut(s)	131, 200, 571
LweI	GCATC	1 cut(s)	422
MalI	GATC	3 cut(s)	519, 533, 540
MbiI	CCGCTC	2 cut(s)	420, 593
MboI	GATC	3 cut(s)	517, 531, 538
MboII	GAAGA	4 cut(s)	16, 31, 369, 512
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	3 cut(s)	7, 100, 275
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	2 cut(s)	626, 713
MmeI	TCCRAC	2 cut(s)	495, 582
MroNI	GCCGGC	3 cut(s)	21, 676, 723
MroXI	GAANNNNTTC	1 cut(s)	497
MspI	CCGG	7 cut(s)	22, 124, 174, 655, 673, 677, 724
MspR9I	CCNGG	4 cut(s)	56, 107, 124, 257
MvaI	CCWGG	3 cut(s)	56, 107, 257
MvnI	CGCG	2 cut(s)	386, 512
NaeI	GCCGGC	3 cut(s)	23, 678, 725
NarI	GGCGCC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	3 cut(s)	517, 531, 538
NgoMIV	GCCGGC	3 cut(s)	21, 676, 723
NlaIII	CATG	1 cut(s)	555
NlaIV	GGNNCC	6 cut(s)	97, 128, 369, 574, 597, 619
NmeAIII	GCCGAG	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	588
PceI	AGGCCT	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	4 cut(s)	56, 246, 315, 540
PdiI	GCCGGC	3 cut(s)	23, 678, 725
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	7 cut(s)	36, 47, 61, 281, 464, 498, 660
PflMI	CCANNNNNTGG	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	146, 215, 263, 393, 422, 586
PleI	GAGTC	2 cut(s)	626, 712
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	2 cut(s)	626, 712
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	54, 105, 255
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	3 cut(s)	54, 105, 255
PspN4I	GGNNCC	6 cut(s)	97, 128, 369, 574, 597, 619
PspPI	GGNCC	2 cut(s)	52, 596
PspXI	VCTCGAGB	1 cut(s)	588
PsuI	RGATCY	1 cut(s)	517
SacI	GAGCTC	1 cut(s)	18
SatI	GCNGC	6 cut(s)	145, 214, 262, 392, 421, 585
Sau3AI	GATC	3 cut(s)	517, 531, 538
Sau96I	GGNCC	2 cut(s)	52, 596
SchI	GAGTC	2 cut(s)	626, 713
ScrFI	CCNGG	4 cut(s)	56, 107, 124, 257
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	422
SfoI	GGCGCC	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	588
SinI	GGWCC	2 cut(s)	52, 596
SlaI	CTCGAG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
Sse9I	AATT	3 cut(s)	7, 100, 275
SseBI	AGGCCT	1 cut(s)	170
SspDI	GGCGCC	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	4 cut(s)	54, 105, 122, 255
StyI	CCWWGG	2 cut(s)	84, 161
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	8 cut(s)	279, 342, 416, 543, 589, 638, 646, 663
TasI	AATT	3 cut(s)	7, 100, 275
TauI	GCSGC	3 cut(s)	264, 394, 423
TfiI	GAWTC	7 cut(s)	36, 47, 61, 281, 464, 498, 660
TseI	GCWGC	3 cut(s)	144, 213, 584
TspDTI	ATGAA	2 cut(s)	17, 540
TspGWI	ACGGA	5 cut(s)	243, 366, 588, 675, 726
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	2 cut(s)	52, 596
XapI	RAATTY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.