Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001915

Physical Location & Seq

Genomic Coordinates Reverse (-)

30449282 .. 30450126

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG257600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAAGAGTGCGAGCTGTGTGGAGTGAGAGCTCGGATGTACTGCGAGGCGGACCGCGCGAGTTTATGCTGGGACTGCGACAAGAAAGTTCACGGAGCTAACTTTCTGGTGGCGAAGCATCCGAGAGTTCTTCTCTGCCATGTGTGCCAGTCGCAGACGCCGTGGACGAGTTGCGGAGCCAAGCTGACGCCGACGGTGTCGGTCTGCCAGAGTTGCGTTGGAAGCTGTAGAAAGATTGACCTGAACGAGGAGCAAGAAAGCGAGGCAGAGAATGAAGAAGAAGAAGAAGAAGATTATTATGATGATGAAGATGAAGAAGATGATGACGTTGAGGATGAGGAGGAAGAGGATGAGAACCAGGTGGTTCCATGGTCATGCTGTTCTTACTCACCGGCACAGCGTCCACCAGCAGTGAGCGGTTCGGATAGTGAAGCCGAGATTTCGGTGTCGAAGCGACTGCGAGAGAATGTAGATGTGGATTATTCTGATGATGAGGTAGGGTTTGATGGGACGTCGTCGTTTGGTGGTTCAATGAGACCGTTGAAAAGGCCGAAAGTGGGTGAAGAGAAGAATGGTGACGGAGATGATGGCGGTGAATCGGAGTGGAGAGCAACGGCGATCATGAGCTCAATTCAGAGGCTGGAAAAGGAAGTGATCAACGGCGCTGGTAATGCGTCCACCGCGGTTCTTAGGATTTGCAAACTCAGTAGAGATGAGAGCAGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

242

Amino Acids

26.85

Weight (kDa)

4.34

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	2 - 43	2.6e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27310 AT5G54470
fragaria_vesca	FvH4_3g03640 FvH4_3g21230 FvH4_3g21230 FvH4_6g44270
malus_domestica	MD09G1099500.v1.1
prunus_persica	Prupe.3G226900_v2.0.a1 Prupe.3G226900_v2.0.a1 Prupe.4G033600_v2.0.a1 Prupe.4G192700_v2.0.a1 Prupe.4G192700_v2.0.a1
pyrus_communis	pycom09g02300 pycom10g25840 pycom11g20620 pycom17g08480
rosa_chinensis	RchiOBHm_Chr2g0161131 RchiOBHm_Chr5g0005681 RchiOBHm_Chr5g0036301
rosa_laevigata	RLG00000021259 RLG00000031317 RLG00000033685
rosa_multiflora	Rmu_sc0000247.1_g000074 Rmu_sc0000955.1_g000044 Rmu_sc0006420.1_g000032 Rmu_sc0022348.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044490 Rroxscaffold_1G00070160 Rroxscaffold_2G00089120
rosa_rugosa	Rorug02G0486200 Rorug04G0417200 Rorug05G0154900
rosa_samantha	Rh2AG552700 Rh2BG566700 Rh2CG536400 Rh2DG575700 Rh5AG044800 Rh5AG248300 Rh5BG249000 Rh5CG052400 Rh5CG280200 Rh5DG257600
rosa_wichuraiana	Rw0G008350 Rw2G045730 Rw5G004500 Rw5G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	515
AccBSI	CCGCTC	1 cut(s)	417
AccII	CGCG	3 cut(s)	57, 59, 683
AciI	CCGC	7 cut(s)	50, 55, 174, 417, 591, 681, 683
AcyI	GRCGYC	3 cut(s)	158, 188, 512
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	247, 557
AgsI	TTSAA	2 cut(s)	531, 544
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	6 cut(s)	16, 32, 98, 184, 225, 627
AluI	AGCT	6 cut(s)	16, 32, 98, 184, 225, 627
Alw21I	GWGCWC	2 cut(s)	34, 629
Alw26I	GTCTC	1 cut(s)	529
AlwNI	CAGNNNCTG	1 cut(s)	640
AoxI	GGCC	1 cut(s)	548
ApeKI	GCWGC	1 cut(s)	720
AspLEI	GCGC	2 cut(s)	59, 665
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	4 cut(s)	381, 572, 587, 605
AvaII	GGWCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	34, 629
Bbv12I	GWGCWC	2 cut(s)	34, 629
BccI	CCATC	2 cut(s)	500, 581
BceAI	ACGGC	3 cut(s)	145, 630, 676
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BciT130I	CCWGG	1 cut(s)	359
BclI	TGATCA	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	529
BfmI	CTRYAG	1 cut(s)	226
BfoI	RGCGCY	1 cut(s)	666
BisI	GCNGC	1 cut(s)	721
BlsI	GCNGC	1 cut(s)	722
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	178, 366
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BsaHI	GRCGYC	3 cut(s)	158, 188, 512
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	3 cut(s)	161, 368, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 557
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	3 cut(s)	161, 368, 681
BseGI	GGATG	4 cut(s)	42, 118, 340, 355
BseLI	CCNNNNNNNGG	2 cut(s)	247, 557
BseMII	CTCAG	1 cut(s)	718
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	263, 353
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	3 cut(s)	57, 59, 683
BshFI	GGCC	1 cut(s)	550
BsiHKAI	GWGCWC	2 cut(s)	34, 629
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	2 cut(s)	86, 523
BslI	CCNNNNNNNGG	2 cut(s)	247, 557
BsmAI	GTCTC	1 cut(s)	529
BsmFI	GGGAC	2 cut(s)	86, 523
BsnI	GGCC	1 cut(s)	550
Bso31I	GGTCTC	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	34, 629
Bsp143I	GATC	2 cut(s)	618, 654
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	7 cut(s)	50, 55, 174, 417, 591, 681, 683
BspANI	GGCC	1 cut(s)	550
BspCNI	CTCAG	1 cut(s)	717
BspFNI	CGCG	3 cut(s)	57, 59, 683
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	2 cut(s)	178, 366
BspTNI	GGTCTC	1 cut(s)	529
BsrBI	CCGCTC	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	3 cut(s)	161, 368, 681
BssMI	GATC	2 cut(s)	618, 654
BssNI	GRCGYC	3 cut(s)	158, 188, 512
BssT1I	CCWWGG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	196, 540
Bst6I	CTCTTC	2 cut(s)	339, 558
BstACI	GRCGYC	3 cut(s)	158, 188, 512
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	689, 704
BstDSI	CCRYGG	3 cut(s)	161, 368, 681
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	4 cut(s)	42, 118, 340, 355
BstFNI	CGCG	3 cut(s)	57, 59, 683
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	2 cut(s)	59, 665
BstKTI	GATC	2 cut(s)	621, 657
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	2 cut(s)	618, 654
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 75, 144, 213, 222, 671, 680
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	3 cut(s)	57, 59, 683
BsuRI	GGCC	1 cut(s)	550
BtgI	CCRYGG	3 cut(s)	161, 368, 681
BtsCI	GGATG	4 cut(s)	42, 118, 340, 355
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	14
CaiI	CAGNNNCTG	1 cut(s)	640
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	2 cut(s)	59, 665
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	52
Cfr42I	CCGCGG	1 cut(s)	684
CpoI	CGGWCCG	1 cut(s)	52
CseI	GACGC	4 cut(s)	166, 196, 389, 663
CsiI	ACCWGGT	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	40
CspI	CGGWCCG	1 cut(s)	52
CviAII	CATG	4 cut(s)	140, 369, 375, 622
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	689, 704
DpnI	GATC	2 cut(s)	620, 656
DpnII	GATC	2 cut(s)	618, 654
Eam1104I	CTCTTC	2 cut(s)	339, 558
EarI	CTCTTC	2 cut(s)	339, 558
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	32, 627
Eco130I	CCWWGG	1 cut(s)	368
Eco24I	GRGCYC	2 cut(s)	34, 629
Eco31I	GGTCTC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	32, 627
EcoICRI	GAGCTC	2 cut(s)	32, 627
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	368
EcoT38I	GRGCYC	2 cut(s)	34, 629
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	4 cut(s)	143, 372, 378, 625
FaiI	YATR	6 cut(s)	67, 141, 300, 370, 376, 623
FaqI	GGGAC	2 cut(s)	86, 523
FatI	CATG	4 cut(s)	139, 368, 374, 621
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	1 cut(s)	721
FokI	GGATG	4 cut(s)	49, 105, 347, 362
FriOI	GRGCYC	2 cut(s)	34, 629
Fsp4HI	GCNGC	1 cut(s)	721
GlaI	GCGC	2 cut(s)	58, 664
GluI	GCNGC	1 cut(s)	721
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	666
HaeIII	GGCC	1 cut(s)	550
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	4 cut(s)	166, 196, 389, 663
HhaI	GCGC	2 cut(s)	59, 665
Hin1I	GRCGYC	3 cut(s)	158, 188, 512
Hin1II	CATG	4 cut(s)	143, 372, 378, 625
Hin6I	GCGC	2 cut(s)	57, 663
HinP1I	GCGC	2 cut(s)	57, 663
HinfI	GANTC	1 cut(s)	596
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	4 cut(s)	381, 572, 587, 605
Hpy166II	GTNNAC	4 cut(s)	91, 165, 404, 678
Hpy188I	TCNGA	6 cut(s)	36, 123, 424, 487, 601, 636
Hpy188III	TCNNGA	1 cut(s)	622
Hpy8I	GTNNAC	4 cut(s)	91, 165, 404, 678
Hpy99I	CGWCG	3 cut(s)	196, 517, 520
HpyCH4III	ACNGT	2 cut(s)	196, 540
HpyCH4IV	ACGT	2 cut(s)	327, 512
HpyCH4V	TGCA	1 cut(s)	699
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 75, 144, 213, 222, 671, 680
HpyF3I	CTNAG	2 cut(s)	689, 704
HpySE526I	ACGT	2 cut(s)	327, 512
Hsp92I	GRCGYC	3 cut(s)	158, 188, 512
Hsp92II	CATG	4 cut(s)	143, 372, 378, 625
HspAI	GCGC	2 cut(s)	57, 663
Ksp22I	TGATCA	1 cut(s)	654
KspI	CCGCGG	1 cut(s)	684
Kzo9I	GATC	2 cut(s)	618, 654
LmnI	GCTCC	3 cut(s)	95, 176, 250
LweI	GCATC	1 cut(s)	127
MabI	ACCWGGT	1 cut(s)	357
MaeII	ACGT	2 cut(s)	327, 512
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	2 cut(s)	620, 656
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	2 cut(s)	618, 654
MhlI	GDGCHC	2 cut(s)	34, 629
MluCI	AATT	1 cut(s)	630
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	9 cut(s)	40, 241, 256, 325, 331, 334, 340, 487, 630
MslI	CAYNNNNRTG	1 cut(s)	373
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	3 cut(s)	57, 59, 683
MwoI	GCNNNNNNNGC	7 cut(s)	56, 75, 144, 213, 222, 671, 680
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	2 cut(s)	618, 654
NlaIII	CATG	4 cut(s)	143, 372, 378, 625
NlaIV	GGNNCC	2 cut(s)	178, 366
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	1 cut(s)	575
PagI	TCATGA	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 164
PfeI	GAWTC	1 cut(s)	596
PflFI	GACNNNGTC	2 cut(s)	196, 514
PkrI	GCNGC	1 cut(s)	722
Psp124BI	GAGCTC	2 cut(s)	34, 629
Psp6I	CCWGG	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	178, 366
PspPI	GGNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	640
PsyI	GACNNNGTC	2 cut(s)	196, 514
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	373
Rsr2I	CGGWCCG	1 cut(s)	52
RsrII	CGGWCCG	1 cut(s)	52
SacI	GAGCTC	2 cut(s)	34, 629
SacII	CCGCGG	1 cut(s)	684
SatI	GCNGC	1 cut(s)	721
Sau3AI	GATC	2 cut(s)	618, 654
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	2 cut(s)	34, 629
SexAI	ACCWGGT	1 cut(s)	357
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	226
Sfr303I	CCGCGG	1 cut(s)	684
SgrBI	CCGCGG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	373
Sse9I	AATT	1 cut(s)	630
SsiI	CCGC	7 cut(s)	50, 55, 174, 417, 591, 681, 683
SstI	GAGCTC	2 cut(s)	34, 629
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	196, 540
TaiI	ACGT	2 cut(s)	330, 515
TaqI	TCGA	1 cut(s)	449
TaqII	GACCGA	1 cut(s)	190
TasI	AATT	1 cut(s)	630
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	596
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	1 cut(s)	720
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	4 cut(s)	17, 288, 321, 327
TspGWI	ACGGA	2 cut(s)	108, 594
TspRI	CASTG	1 cut(s)	417
Tth111I	GACNNNGTC	2 cut(s)	196, 514
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
ZraI	GACGTC	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.