Rroxscaffold_2G00089120

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001915
Physical Location & Seq
Reverse (-)
10990143 .. 10992253
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089120.1

Sequence Viewer

Length: 768 bp
ATGAAGAACTGCGAGCTTTGTCACCTAACTGCGCGGACCTACTGCGAATCGGACCAGGCAATTCTCTGCTGGGACTGCGATTTCAAGGTTCACGGCGCCAATTTCCTGGTGGCCAGGCACTCCAGGACGCTCCTCTGCCACGCGTGCCACGCGCCGACTGCCTGGAAGGCCTCCGGCGAGAAACTTGGCCATACTTTTTCCGTTTGCGAGCGCTGTGTGGCTAGAAATGAAAGCAGAGACGACGAGGAAGAGAGCCAGGCTGGCAATGATGATGCTACGGATGATGATGACCTCGATGACTCCGATTATGATGATGACGACGGCGATATTGATTTTGATGAGGACGGAGATAATCAGGTGGTGCCTTGGGGTTCGACGCCTCCTCCGCCAGCTGCTAGCTCTACCAGCAGCGACGAGGTTAACAATGACGGTAGATATGGTCGCCGATCAGTCGGCGCGGTTTCGTTGAAGCGAACCAGAGATAATGCTTCCGATCTTCGCTCTCTGGACGATCTCCGCCGTTTAGCCGCTCGACTGAGGGGTGAAACAGCTGGCACCGCCCATTCCGGACGGTCAGAGACCGACGGCGCAGCCACTTTGGTTGACTGCAGAAGACCTTCAAAAGACCGGAGAGTGGATCTAAACGGGTCGGGTCCGCGTTTCTCGCCCGCTATAGAGTCGACGAGGAGAAATCTCCGGCAAAATGGCCGTAGACTCAGCGAAGCCGTCGATCTTGACTCCTCAGAGCCTCGTATCCCTCCGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-B_box

Protein Analysis

255

Amino Acids

28.07

Weight (kDa)

4.83

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 95, 361, 554
AccBSI CCGCTC 1 cut(s) 530
AccI GTMKAC 2 cut(s) 680, 712
AccII CGCG 5 cut(s) 34, 143, 152, 458, 658
AccIII TCCGGA 1 cut(s) 566
AciI CCGC 8 cut(s) 34, 386, 458, 517, 528, 558, 656, 669
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 3 cut(s) 111, 187, 706
AcyI GRCGYC 2 cut(s) 96, 377
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 634
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 3 cut(s) 85, 469, 621
AjnI CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
AluBI AGCT 4 cut(s) 16, 392, 399, 551
AluI AGCT 4 cut(s) 16, 392, 399, 551
Alw26I GTCTC 2 cut(s) 231, 572
AlwI GGATC 1 cut(s) 645
Aor13HI TCCGGA 1 cut(s) 566
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 4 cut(s) 111, 168, 187, 706
ApeKI GCWGC 3 cut(s) 392, 408, 590
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 6 cut(s) 34, 98, 154, 213, 458, 590
AspS9I GGNCC 3 cut(s) 36, 52, 653
AsuHPI GGTGA 2 cut(s) 14, 554
AsuNHI GCTAGC 1 cut(s) 395
AvaII GGWCC 3 cut(s) 36, 52, 653
BalI TGGCCA 2 cut(s) 113, 189
BanI GGYRCC 3 cut(s) 95, 361, 554
BbsI GAAGAC 1 cut(s) 619
BbvI GCAGC 3 cut(s) 379, 420, 602
BceAI ACGGC 6 cut(s) 109, 337, 504, 601, 693, 710
BciT130I CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BciVI GTATCC 1 cut(s) 764
BcoDI GTCTC 2 cut(s) 231, 572
BfaI CTAG 2 cut(s) 222, 396
BfmI CTRYAG 2 cut(s) 607, 672
BfoI RGCGCY 2 cut(s) 99, 214
BfuI GTATCC 1 cut(s) 764
BglI GCCNNNNNGGC 2 cut(s) 167, 261
BisI GCNGC 4 cut(s) 393, 409, 528, 591
BlsI GCNGC 4 cut(s) 394, 410, 529, 592
Bme1390I CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
Bme18I GGWCC 3 cut(s) 36, 52, 653
BmgT120I GGNCC 3 cut(s) 36, 52, 653
BmiI GGNNCC 4 cut(s) 97, 363, 556, 654
BmrFI CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
BmsI GCATC 1 cut(s) 262
BmtI GCTAGC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 619
BpmI CTGGAG 1 cut(s) 106
BsaHI GRCGYC 2 cut(s) 96, 377
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 566, 627
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse3DI GCAATG 1 cut(s) 271
BseAI TCCGGA 1 cut(s) 566
BseBI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 3 cut(s) 527, 730, 756
BseRI GAGGAG 4 cut(s) 122, 372, 700, 730
BseXI GCAGC 3 cut(s) 379, 420, 602
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 5 cut(s) 34, 143, 152, 458, 658
BshFI GGCC 4 cut(s) 113, 170, 189, 708
BshNI GGYRCC 3 cut(s) 95, 361, 554
BsiSI CCGG 4 cut(s) 174, 567, 628, 697
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 2 cut(s) 231, 572
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 4 cut(s) 113, 170, 189, 708
Bso31I GGTCTC 1 cut(s) 572
Bsp13I TCCGGA 1 cut(s) 566
Bsp143I GATC 5 cut(s) 446, 493, 511, 637, 730
BspACI CCGC 8 cut(s) 34, 386, 458, 517, 528, 558, 656, 669
BspANI GGCC 4 cut(s) 113, 170, 189, 708
BspCNI CTCAG 3 cut(s) 528, 729, 755
BspEI TCCGGA 1 cut(s) 566
BspFNI CGCG 5 cut(s) 34, 143, 152, 458, 658
BspLI GGNNCC 4 cut(s) 97, 363, 556, 654
BspMAI CTGCAG 1 cut(s) 611
BspOI GCTAGC 1 cut(s) 399
BspPI GGATC 1 cut(s) 645
BspT107I GGYRCC 3 cut(s) 95, 361, 554
BspTNI GGTCTC 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 5 cut(s) 446, 493, 511, 637, 730
BssNI GRCGYC 2 cut(s) 96, 377
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
Bst4CI ACNGT 2 cut(s) 431, 573
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 2 cut(s) 96, 377
BstC8I GCNNGC 8 cut(s) 14, 145, 209, 262, 390, 397, 553, 669
BstDEI CTNAG 3 cut(s) 536, 716, 742
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 5 cut(s) 34, 143, 152, 458, 658
BstH2I RGCGCY 2 cut(s) 99, 214
BstHHI GCGC 6 cut(s) 34, 98, 154, 213, 458, 590
BstKTI GATC 5 cut(s) 449, 496, 514, 640, 733
BstMAI GTCTC 2 cut(s) 231, 572
BstMBI GATC 5 cut(s) 446, 493, 511, 637, 730
BstNI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
BstSCI CCNGG 6 cut(s) 54, 105, 113, 122, 161, 255
BstSFI CTRYAG 2 cut(s) 607, 672
BstUI CGCG 5 cut(s) 34, 143, 152, 458, 658
BstV1I GCAGC 3 cut(s) 379, 420, 602
BstV2I GAAGAC 1 cut(s) 619
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 637
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 4 cut(s) 113, 170, 189, 708
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 8 cut(s) 14, 145, 209, 262, 390, 397, 553, 669
CfoI GCGC 6 cut(s) 34, 98, 154, 213, 458, 590
Cfr13I GGNCC 3 cut(s) 36, 52, 653
CseI GACGC 2 cut(s) 136, 385
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
DdeI CTNAG 3 cut(s) 536, 716, 742
DinI GGCGCC 1 cut(s) 97
DpnI GATC 5 cut(s) 448, 495, 513, 639, 732
DpnII GATC 5 cut(s) 446, 493, 511, 637, 730
EaeI YGGCCR 3 cut(s) 111, 187, 706
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 2 cut(s) 375, 506
Eco130I CCWWGG 1 cut(s) 365
Eco147I AGGCCT 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 3 cut(s) 36, 52, 653
Eco47III AGCGCT 1 cut(s) 212
EcoRII CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
EcoT14I CCWWGG 1 cut(s) 365
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 231
FaiI YATR 5 cut(s) 192, 309, 438, 674, 766
FaqI GGGAC 1 cut(s) 86
FauI CCCGC 1 cut(s) 676
FblI GTMKAC 2 cut(s) 680, 712
Fnu4HI GCNGC 4 cut(s) 393, 409, 528, 591
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 4 cut(s) 393, 409, 528, 591
FspBI CTAG 2 cut(s) 222, 396
GlaI GCGC 6 cut(s) 33, 97, 153, 212, 457, 589
GluI GCNGC 4 cut(s) 393, 409, 528, 591
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 2 cut(s) 99, 214
HaeIII GGCC 4 cut(s) 113, 170, 189, 708
HapII CCGG 4 cut(s) 174, 567, 628, 697
HgaI GACGC 2 cut(s) 136, 385
HhaI GCGC 6 cut(s) 34, 98, 154, 213, 458, 590
Hin1I GRCGYC 2 cut(s) 96, 377
Hin6I GCGC 6 cut(s) 32, 96, 152, 211, 456, 588
HinP1I GCGC 6 cut(s) 32, 96, 152, 211, 456, 588
HincII GTYRAC 3 cut(s) 421, 604, 681
HindII GTYRAC 3 cut(s) 421, 604, 681
HinfI GANTC 5 cut(s) 47, 299, 677, 714, 737
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 4 cut(s) 174, 567, 628, 697
HphI GGTGA 2 cut(s) 14, 554
Hpy166II GTNNAC 5 cut(s) 91, 421, 604, 681, 713
Hpy188I TCNGA 6 cut(s) 52, 304, 493, 577, 745, 762
Hpy188III TCNNGA 3 cut(s) 506, 567, 734
Hpy8I GTNNAC 5 cut(s) 91, 421, 604, 681, 713
Hpy99I CGWCG 7 cut(s) 245, 323, 379, 416, 587, 685, 731
HpyAV CCTTC 2 cut(s) 160, 627
HpyCH4III ACNGT 2 cut(s) 431, 573
HpyCH4V TGCA 1 cut(s) 609
HpyF3I CTNAG 3 cut(s) 536, 716, 742
Hsp92I GRCGYC 2 cut(s) 96, 377
HspAI GCGC 6 cut(s) 32, 96, 152, 211, 456, 588
KasI GGCGCC 1 cut(s) 95
Kpn2I TCCGGA 1 cut(s) 566
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 5 cut(s) 446, 493, 511, 637, 730
LmnI GCTCC 1 cut(s) 135
Lsp1109I GCAGC 3 cut(s) 379, 420, 602
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 222, 396
MaeIII GTNAC 1 cut(s) 20
MalI GATC 5 cut(s) 448, 495, 513, 639, 732
MbiI CCGCTC 1 cut(s) 530
MboI GATC 5 cut(s) 446, 493, 511, 637, 730
MboII GAAGA 4 cut(s) 16, 260, 488, 624
MflI RGATCY 1 cut(s) 637
MlsI TGGCCA 2 cut(s) 113, 189
MluCI AATT 2 cut(s) 60, 100
MluI ACGCGT 1 cut(s) 141
MluNI TGGCCA 2 cut(s) 113, 189
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 4 cut(s) 293, 686, 708, 731
Mox20I TGGCCA 2 cut(s) 113, 189
MroI TCCGGA 1 cut(s) 566
MroXI GAANNNNTTC 1 cut(s) 616
MscI TGGCCA 2 cut(s) 113, 189
MseI TTAA 1 cut(s) 420
Msp20I TGGCCA 2 cut(s) 113, 189
MspA1I CMGCKG 2 cut(s) 392, 551
MspI CCGG 4 cut(s) 174, 567, 628, 697
MspR9I CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
MvaI CCWGG 6 cut(s) 56, 107, 115, 124, 163, 257
MvnI CGCG 5 cut(s) 34, 143, 152, 458, 658
NarI GGCGCC 1 cut(s) 96
NdeII GATC 5 cut(s) 446, 493, 511, 637, 730
NheI GCTAGC 1 cut(s) 395
NlaIV GGNNCC 4 cut(s) 97, 363, 556, 654
NmuCI GTSAC 1 cut(s) 20
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 1 cut(s) 47
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 4 cut(s) 394, 410, 529, 592
PleI GAGTC 4 cut(s) 293, 685, 708, 731
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 4 cut(s) 293, 685, 708, 731
Psp6I CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 6 cut(s) 54, 105, 113, 122, 161, 255
PspN4I GGNNCC 4 cut(s) 97, 363, 556, 654
PspPI GGNCC 3 cut(s) 36, 52, 653
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 637
PvuII CAGCTG 2 cut(s) 392, 551
SalI GTCGAC 1 cut(s) 679
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 4 cut(s) 393, 409, 528, 591
Sau3AI GATC 5 cut(s) 446, 493, 511, 637, 730
Sau96I GGNCC 3 cut(s) 36, 52, 653
SchI GAGTC 4 cut(s) 293, 686, 708, 731
ScrFI CCNGG 6 cut(s) 56, 107, 115, 124, 163, 257
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 2 cut(s) 607, 672
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 3 cut(s) 36, 52, 653
Sse9I AATT 2 cut(s) 60, 100
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 8 cut(s) 34, 386, 458, 517, 528, 558, 656, 669
SspDI GGCGCC 1 cut(s) 95
SspMI CTAG 2 cut(s) 222, 396
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 6 cut(s) 54, 105, 113, 122, 161, 255
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 2 cut(s) 431, 573
TaqI TCGA 5 cut(s) 294, 374, 532, 680, 729
TaqII GACCGA 1 cut(s) 596
TasI AATT 2 cut(s) 60, 100
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 3 cut(s) 392, 408, 590
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 17, 243
TspGWI ACGGA 3 cut(s) 190, 293, 360
VpaK11BI GGWCC 3 cut(s) 36, 52, 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmiI GTMKAC 2 cut(s) 680, 712
XmnI GAANNNNTTC 1 cut(s) 616
XspI CTAG 2 cut(s) 222, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.