AT4G32105

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001875
Physical Location & Seq
Reverse (-)
15513214 .. 15514087
874 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32105.1

Sequence Viewer

Length: 375 bp
ATGGCATCAAACGCTTGCAAAGTCCTTTGCCTTGTTCTCTTCCTCGCATTCGTTAACCAAGGGTATGGGGATTGTCATCTAAATTACCTATCTGTGAAACAATCAAAAACCGGAAAATTGGTTCAGAATAAACCGGAGTGGGAAGTGAGAGTGACGAACCCTTGCAACAATTGCAAATTCCAGTACACGAAGTTGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCGCTACCTCGTTGTTGTCAAAATCCGGTGACATTTGTCTCCTCAACGCCGGTAACTTCATCTTTCCTCACGTGGACTTCGTTTTCAATTACGTTTGGGACACAAGCTTCGACCTCAAGGTTATCGACGGCGTTATCGTTTGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.78

Weight (kDa)

8.11

Isoelectric Point (pI)

20.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 28 - 120 1.5e-24 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 176
AcvI CACGTG 1 cut(s) 298
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 313
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 176
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AsuHPI GGTGA 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 298
BceAI ACGGC 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 269
BmsI GCATC 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 3 cut(s) 110, 133, 251
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 75
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 257
BsiSI CCGG 4 cut(s) 111, 134, 252, 276
BslFI GGGAC 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 11, 171
BstPAI GACNNNNGTC 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 275
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 198
CviJI RGCY 1 cut(s) 333
CviKI_1 RGCY 1 cut(s) 333
CviQI GTAC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 58
Eco72I CACGTG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 201
FaiI YATR 2 cut(s) 66, 199
FaqI GGGAC 1 cut(s) 338
FatI CATG 1 cut(s) 197
HapII CCGG 4 cut(s) 111, 134, 252, 276
Hin1II CATG 1 cut(s) 201
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 331
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 4 cut(s) 111, 134, 252, 276
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 3 cut(s) 55, 186, 301
Hpy188I TCNGA 1 cut(s) 126
Hpy8I GTNNAC 3 cut(s) 55, 186, 301
Hpy99I CGWCG 2 cut(s) 230, 356
HpyCH4IV ACGT 2 cut(s) 297, 318
HpyCH4V TGCA 3 cut(s) 18, 165, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 171
HpySE526I ACGT 2 cut(s) 297, 318
Hsp92II CATG 1 cut(s) 201
KspAI GTTAAC 1 cut(s) 55
LpnPI CCDG 5 cut(s) 124, 147, 194, 265, 289
LweI GCATC 1 cut(s) 14
MaeII ACGT 2 cut(s) 297, 318
MaeIII GTNAC 4 cut(s) 151, 217, 254, 278
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 169
MluCI AATT 5 cut(s) 82, 116, 169, 176, 313
MnlI CCTC 5 cut(s) 53, 244, 278, 303, 350
MseI TTAA 2 cut(s) 54, 373
MspI CCGG 4 cut(s) 111, 134, 252, 276
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 11, 171
NlaIII CATG 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 151, 254
PcsI WCGNNNNNNNCGW 2 cut(s) 303, 360
PctI GAATGC 1 cut(s) 47
PmaCI CACGTG 1 cut(s) 298
PmlI CACGTG 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 298
PshAI GACNNNNGTC 1 cut(s) 261
PspCI CACGTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 54, 373
SetI ASST 7 cut(s) 90, 236, 300, 321, 335, 342, 348
SfaNI GCATC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 5 cut(s) 82, 116, 169, 176, 313
StyI CCWWGG 1 cut(s) 58
TaiI ACGT 2 cut(s) 300, 321
TaqI TCGA 2 cut(s) 336, 351
TasI AATT 5 cut(s) 82, 116, 169, 176, 313
TatI WGTACW 1 cut(s) 183
Tru1I TTAA 2 cut(s) 54, 373
Tru9I TTAA 2 cut(s) 54, 373
TseFI GTSAC 2 cut(s) 151, 254
Tsp45I GTSAC 2 cut(s) 151, 254
TspDTI ATGAA 1 cut(s) 274
XapI RAATTY 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.