Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001875

Physical Location & Seq

Genomic Coordinates Reverse (-)

55835957 .. 55836609

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004068

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTGTTTTGGCAACATTGAAATCGGTACTACCTGGAGTGGAGCTGTGATTGCGGGCAAACCCGAATGGAACGTGGTTGTGAAAAACAACTGCCAATGTGCTCAATCACTGATAACGGTGAGCTGCCGAGGGTTTCAGTCGTCATATCCAGTTGATCCAAAGAAACTAGTGAAGCATGTTGACAAGTGCATCATCAACTGGGGAGAGGCCTTGCCCGGCGGTGCTTCTGTGACATTCTCTTATGCTTGGGATCGGGATCGGGATCCTCCTTTCATTTTGGTGCTTGTGTCCTCTGTCGTGATCCCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

104

Amino Acids

11.23

Weight (kDa)

7.57

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	5 - 86	9.8e-23	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32100 AT4G32105 AT4G32110
fragaria_vesca	FvH4_2g27480 FvH4_2g28690 FvH4_2g28701 FvH4_2g28710 FvH4_2g28712 FvH4_5g03660 FvH4_5g25410
malus_domestica	MD08G1079500.v1.1 MD08G1151500.v1.1 MD15G1128800.v1.1
prunus_persica	Prupe.1G484000_v2.0.a1 Prupe.1G484100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286461 RchiOBHm_Chr6g0297461 RchiOBHm_Chr6g0297491
rosa_laevigata	RLG00000004068 RLG00000011592 RLG00000011595 RLG00000011596 RLG00000012570
rosa_multiflora	Rmu_sc0008467.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001490 Rroxscaffold_7G00170440 Rroxscaffold_7G00170460
rosa_rugosa	Rorug06G0055900 Rorug06G0179800 Rorug06G0272400 Rorug06G0272600 Rorug07G0030000
rosa_samantha	Rh6AG383500 Rh6AG383600 Rh6AG383800 Rh6BG391700 Rh6BG392000 Rh6CG296400 Rh6CG397300 Rh6CG397700 Rh6DG288200 Rh6DG384200
rosa_wichuraiana	Rw6G025190 Rw6G033400 Rw6G033410 Rw6G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	53, 219
AclWI	GGATC	6 cut(s)	149, 257, 258, 264, 270, 295
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	20
AhlI	ACTAGT	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	44, 123
AluI	AGCT	2 cut(s)	44, 123
Alw21I	GWGCWC	1 cut(s)	103
AlwI	GGATC	6 cut(s)	149, 257, 258, 264, 270, 295
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	216
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	34, 216
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	34, 216
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	216
BsaBI	GATNNNNATC	2 cut(s)	255, 261
BsaJI	CCNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	149, 203
Bse8I	GATNNNNATC	2 cut(s)	255, 261
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	127
BseJI	GATNNNNATC	2 cut(s)	255, 261
BseNI	ACTGG	2 cut(s)	149, 203
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	216
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	5 cut(s)	154, 250, 256, 262, 300
BspACI	CCGC	2 cut(s)	53, 219
BspANI	GGCC	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	6 cut(s)	149, 257, 258, 264, 270, 295
BsrI	ACTGG	2 cut(s)	149, 203
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	5 cut(s)	154, 250, 256, 262, 300
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	55
BstKTI	GATC	5 cut(s)	157, 253, 259, 265, 303
BstMBI	GATC	5 cut(s)	154, 250, 256, 262, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	32, 214
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	3 cut(s)	44, 123, 209
CviKI_1	RGCY	3 cut(s)	44, 123, 209
CviQI	GTAC	1 cut(s)	27
DpnI	GATC	5 cut(s)	156, 252, 258, 264, 302
DpnII	GATC	5 cut(s)	154, 250, 256, 262, 300
Eco147I	AGGCCT	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	32
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	145, 177, 243
FatI	CATG	1 cut(s)	175
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	3 cut(s)	254, 260, 298
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	179
Kzo9I	GATC	5 cut(s)	154, 250, 256, 262, 300
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	5 cut(s)	19, 46, 162, 184, 229
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	5 cut(s)	156, 252, 258, 264, 302
MboI	GATC	5 cut(s)	154, 250, 256, 262, 300
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	122, 199, 276, 301
MseI	TTAA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	34, 216
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	5 cut(s)	154, 250, 256, 262, 300
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	5 cut(s)	154, 250, 256, 262, 300
ScrFI	CCNGG	2 cut(s)	34, 216
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	4 cut(s)	35, 46, 75, 125
SfaNI	GCATC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	166
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	53, 219
SspMI	CTAG	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	32, 214
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	114
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.