Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001875

Physical Location & Seq

Genomic Coordinates Reverse (-)

16926181 .. 16926840

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAAGCTACCACTAAATTTCTTAGCATCTTTTTACTATGCAGTCTCTTTATCGGAGGCGATTCTCAACCTTGCACCGTAGACAATCTCAAGATTACACAGTCAAAAACTGGGAAGTCTGTTCAAGGTCAACCAGAGTGGAATGTAACAATCACAAATGACTGCATATGTGATCAAGTAAATATTGAGATTAATTCACCTGGGTTTCAAAGTGTGGAGAACATTGATCCTTCAATCTTGGGCAAATCTGGTGACAACTATCTTGTCAATCATGGTAACCCCATCCATTATCAAGATAATTTCAGTTTCACCTATGCTTGGGCGACTCAGTTTACTTTCAAACCAGTATACTCCTTGGTTCAATGTTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

4.64

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	28 - 122	1.3e-28	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32100 AT4G32105 AT4G32110
fragaria_vesca	FvH4_2g27480 FvH4_2g28690 FvH4_2g28701 FvH4_2g28710 FvH4_2g28712 FvH4_5g03660 FvH4_5g25410
malus_domestica	MD08G1079500.v1.1 MD08G1151500.v1.1 MD15G1128800.v1.1
prunus_persica	Prupe.1G484000_v2.0.a1 Prupe.1G484100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286461 RchiOBHm_Chr6g0297461 RchiOBHm_Chr6g0297491
rosa_laevigata	RLG00000004068 RLG00000011592 RLG00000011595 RLG00000011596 RLG00000012570
rosa_multiflora	Rmu_sc0008467.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001490 Rroxscaffold_7G00170440 Rroxscaffold_7G00170460
rosa_rugosa	Rorug06G0055900 Rorug06G0179800 Rorug06G0272400 Rorug06G0272600 Rorug07G0030000
rosa_samantha	Rh6AG383500 Rh6AG383600 Rh6AG383800 Rh6BG391700 Rh6BG392000 Rh6CG296400 Rh6CG397300 Rh6CG397700 Rh6DG288200 Rh6DG384200
rosa_wichuraiana	Rw6G025190 Rw6G033400 Rw6G033410 Rw6G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	81, 348
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	5 cut(s)	125, 209, 234, 340, 362
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	2 cut(s)	8, 371
AluI	AGCT	2 cut(s)	8, 371
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	17
AseI	ATTAAT	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	189, 263, 301
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	200, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	2 cut(s)	115, 344
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	200, 354
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	2 cut(s)	115, 344
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	172, 226
BspCNI	CTCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	115, 344
BssECI	CCNNGG	2 cut(s)	200, 354
BssMI	GATC	2 cut(s)	172, 226
BssNAI	GTATAC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	354
Bst1107I	GTATAC	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	79, 102
BstDEI	CTNAG	2 cut(s)	23, 327
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	2 cut(s)	175, 229
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	2 cut(s)	172, 226
BstNI	CCWGG	1 cut(s)	201
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	199
BstZ17I	GTATAC	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	282
CspCI	CAANNNNNGTGG	2 cut(s)	119, 154
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	2 cut(s)	8, 371
CviKI_1	RGCY	2 cut(s)	8, 371
DdeI	CTNAG	2 cut(s)	23, 327
DpnI	GATC	2 cut(s)	174, 228
DpnII	GATC	2 cut(s)	172, 226
Eco130I	CCWWGG	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	275
FaiI	YATR	6 cut(s)	40, 167, 169, 273, 315, 349
FatI	CATG	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	167
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	2 cut(s)	81, 348
FokI	GGATG	1 cut(s)	269
Hin1II	CATG	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	62, 325
HphI	GGTGA	3 cut(s)	189, 263, 301
Hpy166II	GTNNAC	4 cut(s)	82, 131, 333, 349
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	91, 293
Hpy8I	GTNNAC	4 cut(s)	82, 131, 333, 349
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	79, 102
HpyCH4V	TGCA	3 cut(s)	42, 75, 165
HpyF3I	CTNAG	2 cut(s)	23, 327
Hsp92II	CATG	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	172, 226
LpnPI	CCDG	6 cut(s)	96, 147, 186, 213, 234, 357
LweI	GCATC	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	145, 251, 275
MalI	GATC	2 cut(s)	174, 228
MboI	GATC	2 cut(s)	172, 226
MluCI	AATT	3 cut(s)	17, 193, 298
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	167
NdeII	GATC	2 cut(s)	172, 226
NlaIII	CATG	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	199
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	172, 226
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	6 cut(s)	10, 73, 130, 202, 314, 373
SfaNI	GCATC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	17, 193, 298
SspI	AATATT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	79, 102
TasI	AATT	3 cut(s)	17, 193, 298
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	1 cut(s)	17
XmiI	GTMKAC	2 cut(s)	81, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.