RLG00000011595

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001875
Physical Location & Seq
Forward (+)
10801539 .. 10802024
486 bp
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UTR
Exon/CDS
Intron
RLM00000011595

Sequence Viewer

Length: 408 bp
ATGAAGTTCTGTGTTCAAATGCAGCAGCAGCAGCAGCTATACATCATGAAGCAGTTTCTCTGCACAGTTTTCCTCTTCGGTCTCATTGTTGGAGGCCAGTGCTTTGGTTGCTCTGTGAAGGATATCTCAATTGAACAATCTCAGACGGGAAAGTCAGTCCAAAACAAGCCAGAATGGAATGTGACGATCGCAAATGGTTGCTCGTGCTCTCAACTGAATGTTAAACTAGGCTGCGATGGATTTCAAACTGTTGAAGACATTGATCCTTCCATTTTAAGTGTATCTGGTGGTGAGTGTCTGGTCAAGAATGGTCAACCTGTCTATGCCAGTGGAGGTTTCAACTTCATCTATGCTTGGGACACTTCATTTTCTTTCAATCCAATCTCCTCCCAAATTGCTTGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.74

Weight (kDa)

4.81

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 39 - 131 2.5e-30 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AclWI GGATC 1 cut(s) 257
AgsI TTSAA 6 cut(s) 17, 134, 245, 254, 340, 376
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 257
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 6 cut(s) 22, 25, 28, 31, 34, 231
AsuHPI GGTGA 1 cut(s) 302
BauI CACGAG 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 6 cut(s) 34, 37, 40, 43, 46, 218
BccI CCATC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 227
BisI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
BlsI GCNGC 6 cut(s) 24, 27, 30, 33, 36, 233
BpiI GAAGAC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 97, 327
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 2 cut(s) 97, 327
BseRI GAGGAG 1 cut(s) 376
BseXI GCAGC 6 cut(s) 34, 37, 40, 43, 46, 218
BsgI GTGCAG 1 cut(s) 46
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 186, 262
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 154
BspHI TCATGA 1 cut(s) 45
BspPI GGATC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 2 cut(s) 97, 327
BssMI GATC 2 cut(s) 186, 262
BssSI CACGAG 1 cut(s) 202
Bst2BI CACGAG 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 67, 250
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 141
BstKTI GATC 2 cut(s) 189, 265
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 186, 262
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 4 cut(s) 28, 31, 34, 108
BstV1I GCAGC 6 cut(s) 34, 37, 40, 43, 46, 218
BstV2I GAAGAC 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 104, 334
Cac8I GCNNGC 1 cut(s) 400
CciI TCATGA 1 cut(s) 45
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 37, 96, 169, 231
CviKI_1 RGCY 4 cut(s) 37, 96, 169, 231
DdeI CTNAG 1 cut(s) 141
DpnI GATC 2 cut(s) 188, 264
DpnII GATC 2 cut(s) 186, 262
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 124
EcoRV GATATC 1 cut(s) 124
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 40, 47, 324, 351
FaqI GGGAC 1 cut(s) 371
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
Fsp4HI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
FspBI CTAG 1 cut(s) 227
GluI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 46, 304, 405
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 112, 276
HpyCH4III ACNGT 2 cut(s) 67, 250
HpyCH4V TGCA 2 cut(s) 22, 63
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 31, 34, 108
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 2 cut(s) 186, 262
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 6 cut(s) 110, 183, 270, 284, 330, 340
Lsp1109I GCAGC 6 cut(s) 34, 37, 40, 43, 46, 218
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 188, 264
MboI GATC 2 cut(s) 186, 262
MboII GAAGA 2 cut(s) 67, 266
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 129, 393
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 83, 86, 326, 397
MseI TTAA 2 cut(s) 222, 275
MunI CAATTG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 28, 31, 34, 108
NdeII GATC 2 cut(s) 186, 262
NlaIII CATG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 181
PagI TCATGA 1 cut(s) 45
PkrI GCNGC 6 cut(s) 24, 27, 30, 33, 36, 233
Ple19I CGATCG 1 cut(s) 189
PvuI CGATCG 1 cut(s) 189
SaqAI TTAA 2 cut(s) 222, 275
SatI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
Sau3AI GATC 2 cut(s) 186, 262
SduI GDGCHC 1 cut(s) 209
SetI ASST 3 cut(s) 39, 319, 337
Sse9I AATT 2 cut(s) 129, 393
SspMI CTAG 1 cut(s) 227
TaaI ACNGT 2 cut(s) 67, 250
TaqII GACCGA 1 cut(s) 68
TasI AATT 2 cut(s) 129, 393
Tru1I TTAA 2 cut(s) 222, 275
Tru9I TTAA 2 cut(s) 222, 275
TscAI CASTG 2 cut(s) 104, 334
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 6 cut(s) 22, 25, 28, 31, 34, 231
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 4 cut(s) 17, 62, 334, 354
TspRI CASTG 2 cut(s) 104, 334
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.