Rh6DG384200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001875
Physical Location & Seq
Reverse (-)
57737368 .. 57738629
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG384200.1

Sequence Viewer

Length: 408 bp
ATGAAGTTCTGTGTTCAAATGCAGCAGCAGCAGCAGCTATACATCATGAAGCAGTTTCTCTGCGCAGTTTTCCTCTTCGGTCTCAATGTTGGAGGCCAGTGCTTTGGTTGCTCTGTGAAGGATATCTCAATTGAACAATCTCAGACGGGAAAGTCGATCCAAAACAAGCCAGAATGGAATGTGACGATCGCGAATGGTTGCTCATGTTCTCAACTGAATGTTAAACTAGGCTGCGATGGATTTCAAACTGTTGAAGACATTGATCCTTCCATTTTAAGTGTATCTGGTGGTGAGTGTCTGGTCAAGAATGGTCAACCTGTCTATGCCAATGGAGGTTTCAACTTCATCTATGCTTGGGACACTTCATTTTCTTTCAATCCAATCTCCTCCCAAATTGCTTGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.75

Weight (kDa)

4.81

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 39 - 131 6.3e-30 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
Acc16I TGCGCA 1 cut(s) 64
AccII CGCG 1 cut(s) 191
AclWI GGATC 2 cut(s) 151, 257
AgsI TTSAA 6 cut(s) 17, 134, 245, 254, 340, 376
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 151, 257
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 6 cut(s) 22, 25, 28, 31, 34, 231
AspLEI GCGC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 6 cut(s) 34, 37, 40, 43, 46, 218
BccI CCATC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 227
BisI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
BlsI GCNGC 6 cut(s) 24, 27, 30, 33, 36, 233
BpiI GAAGAC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 376
BseXI GCAGC 6 cut(s) 34, 37, 40, 43, 46, 218
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 3 cut(s) 156, 186, 262
Bsp68I TCGCGA 1 cut(s) 191
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 154
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 45
BspPI GGATC 2 cut(s) 151, 257
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 97
BssMI GATC 3 cut(s) 156, 186, 262
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 159, 189, 265
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 3 cut(s) 156, 186, 262
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 4 cut(s) 28, 31, 34, 108
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 6 cut(s) 34, 37, 40, 43, 46, 218
BstV2I GAAGAC 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 104
BtuMI TCGCGA 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 400
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 65
CviAII CATG 2 cut(s) 46, 204
CviJI RGCY 4 cut(s) 37, 96, 169, 231
CviKI_1 RGCY 4 cut(s) 37, 96, 169, 231
DdeI CTNAG 1 cut(s) 141
DpnI GATC 3 cut(s) 158, 188, 264
DpnII GATC 3 cut(s) 156, 186, 262
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 124
EcoRV GATATC 1 cut(s) 124
FaeI CATG 2 cut(s) 49, 207
FaiI YATR 5 cut(s) 40, 47, 205, 324, 351
FaqI GGGAC 1 cut(s) 371
FatI CATG 2 cut(s) 45, 203
Fnu4HI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
Fsp4HI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
FspBI CTAG 1 cut(s) 227
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 1 cut(s) 64
GluI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
HaeIII GGCC 1 cut(s) 96
HhaI GCGC 1 cut(s) 65
Hin1II CATG 2 cut(s) 49, 207
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 4 cut(s) 46, 190, 304, 405
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 112, 276
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 31, 34, 108
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 2 cut(s) 49, 207
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 156, 186, 262
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 5 cut(s) 110, 183, 270, 284, 330
Lsp1109I GCAGC 6 cut(s) 34, 37, 40, 43, 46, 218
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 181
MalI GATC 3 cut(s) 158, 188, 264
MboI GATC 3 cut(s) 156, 186, 262
MboII GAAGA 2 cut(s) 67, 266
MfeI CAATTG 1 cut(s) 129
MluCI AATT 2 cut(s) 129, 393
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 83, 86, 326, 397
MseI TTAA 2 cut(s) 222, 275
MunI CAATTG 1 cut(s) 129
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 28, 31, 34, 108
NdeII GATC 3 cut(s) 156, 186, 262
NlaIII CATG 2 cut(s) 49, 207
NmuCI GTSAC 1 cut(s) 181
NruI TCGCGA 1 cut(s) 191
NsbI TGCGCA 1 cut(s) 64
PagI TCATGA 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PkrI GCNGC 6 cut(s) 24, 27, 30, 33, 36, 233
Ple19I CGATCG 1 cut(s) 189
PvuI CGATCG 1 cut(s) 189
RruI TCGCGA 1 cut(s) 191
SaqAI TTAA 2 cut(s) 222, 275
SatI GCNGC 6 cut(s) 23, 26, 29, 32, 35, 232
Sau3AI GATC 3 cut(s) 156, 186, 262
SetI ASST 3 cut(s) 39, 319, 337
Sse9I AATT 2 cut(s) 129, 393
SspMI CTAG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 155
TaqII GACCGA 1 cut(s) 68
TasI AATT 2 cut(s) 129, 393
Tru1I TTAA 2 cut(s) 222, 275
Tru9I TTAA 2 cut(s) 222, 275
TscAI CASTG 1 cut(s) 104
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 6 cut(s) 22, 25, 28, 31, 34, 231
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 4 cut(s) 17, 62, 334, 354
TspRI CASTG 1 cut(s) 104
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.