AT4G32110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001875
Physical Location & Seq
Reverse (-)
15515649 .. 15516452
804 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32110.1

Sequence Viewer

Length: 375 bp
ATGGCATCAAACGCTTGCAAACTTCTTTGCCTTGTTCTCTTCTTAGCATTCGTTAACCAAGGGTATGGAGATTGTAGTCTAAATTCCCTATCTGTGAAACAATCGAAAACCGGAAAATTGGTTCAGAACAAACCGGAGTGGGAAGTGAGAGTGACGAACCCTTGCAACAATTGCAAATTCCAGAACACAGAGTTGTTATGTGTCGGTTTCAACTCAGTTACACCCATCGATACCTCGTTGTTGCTGAAATCTGGTGACGCGTGTCTCGTCAACGCTGGTAAATTCATAGTTCCTCACGTGGACATCGTTTTCAAATACGTTTGGGACACAAGCTTCGACCTCAAGGTTATCGACGGCGTTATGGTTTGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.69

Weight (kDa)

7.49

Isoelectric Point (pI)

12.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 27 - 118 4.1e-26 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AcsI RAATTY 3 cut(s) 82, 176, 281
AcvI CACGTG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 211, 313
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 269
ApoI RAATTY 3 cut(s) 82, 176, 281
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AsuHPI GGTGA 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 298
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 269
BmsI GCATC 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 326
Bsa29I ATCGAT 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 2 cut(s) 110, 133
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 260
BshVI ATCGAT 1 cut(s) 228
BsiSI CCGG 2 cut(s) 111, 134
BslFI GGGAC 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 227
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 43, 214
BstFNI CGCG 1 cut(s) 260
BstMAI GTCTC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 11, 171
BstPAI GACNNNNGTC 1 cut(s) 261
BstUI CGCG 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 65
Bsu15I ATCGAT 1 cut(s) 228
BsuTUI ATCGAT 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 228
CseI GACGC 1 cut(s) 266
CviJI RGCY 1 cut(s) 333
CviKI_1 RGCY 1 cut(s) 333
DdeI CTNAG 2 cut(s) 43, 214
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 58
Eco72I CACGTG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaiI YATR 4 cut(s) 66, 199, 287, 362
FaqI GGGAC 1 cut(s) 338
HapII CCGG 2 cut(s) 111, 134
HgaI GACGC 1 cut(s) 266
HincII GTYRAC 2 cut(s) 55, 271
HindII GTYRAC 2 cut(s) 55, 271
HindIII AAGCTT 1 cut(s) 331
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 2 cut(s) 111, 134
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 3 cut(s) 55, 271, 301
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 3 cut(s) 55, 271, 301
Hpy99I CGWCG 1 cut(s) 356
HpyCH4IV ACGT 2 cut(s) 297, 318
HpyCH4V TGCA 3 cut(s) 18, 165, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 171
HpyF3I CTNAG 2 cut(s) 43, 214
HpySE526I ACGT 2 cut(s) 297, 318
KspAI GTTAAC 1 cut(s) 55
LpnPI CCDG 5 cut(s) 124, 147, 194, 237, 261
LweI GCATC 1 cut(s) 14
MaeII ACGT 2 cut(s) 297, 318
MaeIII GTNAC 3 cut(s) 151, 217, 254
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 169
MluCI AATT 5 cut(s) 82, 116, 169, 176, 281
MluI ACGCGT 1 cut(s) 258
MnlI CCTC 3 cut(s) 244, 303, 350
MseI TTAA 2 cut(s) 54, 373
MspI CCGG 2 cut(s) 111, 134
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 47
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 11, 171
NmuCI GTSAC 2 cut(s) 151, 254
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 303
PctI GAATGC 1 cut(s) 47
PmaCI CACGTG 1 cut(s) 298
PmlI CACGTG 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 298
PshAI GACNNNNGTC 1 cut(s) 261
PspCI CACGTG 1 cut(s) 298
SaqAI TTAA 2 cut(s) 54, 373
SetI ASST 6 cut(s) 236, 300, 321, 335, 342, 348
SfaNI GCATC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 5 cut(s) 82, 116, 169, 176, 281
StyI CCWWGG 1 cut(s) 58
TaiI ACGT 2 cut(s) 300, 321
TaqI TCGA 4 cut(s) 104, 228, 336, 351
TasI AATT 5 cut(s) 82, 116, 169, 176, 281
Tru1I TTAA 2 cut(s) 54, 373
Tru9I TTAA 2 cut(s) 54, 373
TseFI GTSAC 2 cut(s) 151, 254
Tsp45I GTSAC 2 cut(s) 151, 254
TspDTI ATGAA 1 cut(s) 274
XapI RAATTY 3 cut(s) 82, 176, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.