Rw6G033430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001875
Physical Location & Seq
Reverse (-)
57988694 .. 57989201
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033430.1

Sequence Viewer

Length: 348 bp
ATGGCAGCTATTATGAAATTCCTTTACATCGCGGTACTAATTTGCAGTCTCATTATGGGAGGCGAGTCTCAACATTGCAACCTAAATAATCTCAAAATTACACAATCAACAACTGGAAAGTCTGTTCGAAGTCGGCCAGAGTGGAAAGTAACAATCACGAATGACTGCTCATGTACTCAACTCAATGTTAAGATTAGTTCTCCTGGGTTTCAAACTGTGGAGCCAATGGCATCTTCAATCTTGAGCAAATCCGGTAACGACTATCTTTTTCACTATGCTTGGGCCACTCAGTATACTTTCAAACCATCAGACTCCACAATTGCTTGTTCAGCTGAAGGAAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.67

Weight (kDa)

8.63

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 29 - 89 1.6e-14 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 293
AccII CGCG 1 cut(s) 32
AciI CCGC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 2 cut(s) 36, 175
AgsI TTSAA 3 cut(s) 212, 237, 301
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
AloI GAACNNNNNNTCC 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 8, 332
AluI AGCT 2 cut(s) 8, 332
Alw26I GTCTC 2 cut(s) 53, 72
AoxI GGCC 2 cut(s) 134, 282
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 282
AsuII TTCGAA 1 cut(s) 127
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 53, 72
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 136, 284
BsiSI CCGG 1 cut(s) 252
BsmAI GTCTC 2 cut(s) 53, 72
BsnI GGCC 2 cut(s) 136, 284
Bsp119I TTCGAA 1 cut(s) 127
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 136, 284
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 203
BssNAI GTATAC 1 cut(s) 294
Bst1107I GTATAC 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 32
BstMAI GTCTC 2 cut(s) 53, 72
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 17
BstZ17I GTATAC 1 cut(s) 294
BsuRI GGCC 2 cut(s) 136, 284
BtgZI GCGATG 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 2 cut(s) 35, 174
CviAII CATG 1 cut(s) 171
CviJI RGCY 5 cut(s) 8, 136, 223, 284, 332
CviKI_1 RGCY 5 cut(s) 8, 136, 223, 284, 332
CviQI GTAC 2 cut(s) 35, 174
DdeI CTNAG 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 174
FaiI YATR 5 cut(s) 14, 56, 172, 276, 294
FatI CATG 1 cut(s) 170
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 136, 284
HapII CCGG 1 cut(s) 252
Hin1II CATG 1 cut(s) 174
HinfI GANTC 2 cut(s) 65, 311
HpaII CCGG 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 2 cut(s) 157, 241
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 45, 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 1 cut(s) 174
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 5 cut(s) 99, 150, 189, 216, 265
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 148, 254
MboII GAAGA 1 cut(s) 225
MfeI CAATTG 1 cut(s) 318
MluCI AATT 4 cut(s) 17, 39, 96, 318
MlyI GAGTC 2 cut(s) 74, 305
MnlI CCTC 1 cut(s) 53
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 329
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 1 cut(s) 222
NspV TTCGAA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 73, 305
PpsI GAGTC 2 cut(s) 73, 305
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 36, 175
RsaNI GTAC 2 cut(s) 35, 174
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 2 cut(s) 74, 305
ScrFI CCNGG 1 cut(s) 204
SetI ASST 3 cut(s) 10, 84, 334
SfaNI GCATC 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 4 cut(s) 17, 39, 96, 318
SsiI CCGC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 127
TasI AATT 4 cut(s) 17, 39, 96, 318
TatI WGTACW 1 cut(s) 173
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 29
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.